Wall clock time and date at job start Tue Mar 31 2020 21:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47087 * 2 1 4 4 C 1.50690 * 109.47334 * 239.99710 * 2 1 3 5 5 O 1.21288 * 120.00265 * 240.00284 * 4 2 1 6 6 N 1.34783 * 120.00096 * 60.00202 * 4 2 1 7 7 C 1.46502 * 119.99829 * 180.02562 * 6 4 2 8 8 C 1.53004 * 109.46915 * 179.97438 * 7 6 4 9 9 C 1.53780 * 113.61504 * 274.13337 * 8 7 6 10 10 C 1.53950 * 87.01786 * 220.04868 * 9 8 7 11 11 N 1.46503 * 113.53574 * 270.81077 * 10 9 8 12 12 C 1.36938 * 120.00054 * 252.49482 * 11 10 9 13 13 H 1.08009 * 119.99961 * 0.02562 * 12 11 10 14 14 C 1.38807 * 120.00404 * 179.97438 * 12 11 10 15 15 N 1.31621 * 120.00653 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99618 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47043 * 89.99977 * 16 14 12 18 18 H 1.48503 * 109.47053 * 209.99797 * 16 14 12 19 19 H 1.48497 * 109.47050 * 329.99529 * 16 14 12 20 20 C 1.53774 * 87.11350 * 25.36133 * 10 9 8 21 21 C 1.50704 * 109.46891 * 119.99554 * 2 1 3 22 22 C 1.38418 * 120.02536 * 240.00402 * 21 2 1 23 23 F 1.35101 * 120.01224 * 0.25068 * 22 21 2 24 24 C 1.38475 * 119.97347 * 179.97438 * 22 21 2 25 25 C 1.38206 * 120.02649 * 359.97438 * 24 22 21 26 26 C 1.38207 * 120.04924 * 0.04467 * 25 24 22 27 27 C 1.38421 * 120.02416 * 60.02171 * 21 2 1 28 28 F 1.35098 * 120.01074 * 0.02562 * 27 21 2 29 29 H 1.08995 * 109.47007 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47309 * 300.00631 * 1 2 3 31 31 H 1.09000 * 109.47118 * 60.00403 * 1 2 3 32 32 H 0.96998 * 120.00002 * 359.97438 * 6 4 2 33 33 H 1.09000 * 109.46742 * 299.99236 * 7 6 4 34 34 H 1.08995 * 109.47584 * 59.99671 * 7 6 4 35 35 H 1.09002 * 112.84698 * 45.33088 * 8 7 6 36 36 H 1.08996 * 113.61266 * 334.56866 * 9 8 7 37 37 H 1.09004 * 113.61482 * 105.46733 * 9 8 7 38 38 H 1.08996 * 113.74311 * 139.94843 * 10 9 8 39 39 H 0.96999 * 120.00013 * 72.49387 * 11 10 9 40 40 H 0.97001 * 120.00257 * 180.02562 * 15 14 12 41 41 H 1.09001 * 113.61368 * 220.08831 * 20 10 9 42 42 H 1.09006 * 113.61354 * 89.19087 * 20 10 9 43 43 H 1.07998 * 119.98270 * 179.97438 * 24 22 21 44 44 H 1.08001 * 119.97561 * 180.02562 * 25 24 22 45 45 H 1.07998 * 119.98975 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.7297 -1.6966 -1.1190 6 7 1.7069 -0.2500 -2.4545 7 6 2.1948 -0.9410 -3.6506 8 6 1.6845 -0.2201 -4.9000 9 6 0.2836 -0.6735 -5.3437 10 6 0.8035 -0.5921 -6.7905 11 7 0.6250 0.7267 -7.4030 12 6 -0.3244 0.9084 -8.3729 13 1 -0.9420 0.0794 -8.6861 14 6 -0.4940 2.1580 -8.9529 15 7 -1.4069 2.3327 -9.8848 16 14 0.5736 3.5918 -8.4108 17 1 1.7973 3.6430 -9.2504 18 1 -0.1850 4.8593 -8.5636 19 1 0.9570 3.4130 -6.9873 20 6 2.2114 -0.8184 -6.2149 21 6 2.0323 -0.7103 1.2306 22 6 2.8281 -0.0381 2.1421 23 9 3.1507 1.2568 1.9315 24 6 3.2886 -0.6917 3.2727 25 6 2.9535 -2.0145 3.4914 26 6 2.1594 -2.6869 2.5818 27 6 1.6986 -2.0357 1.4500 28 9 0.9227 -2.6932 0.5607 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.1489 0.5384 -2.5436 33 1 3.2848 -0.9413 -3.6507 34 1 1.8312 -1.9685 -3.6505 35 1 1.7938 0.8626 -4.8382 36 1 0.0314 -1.6853 -5.0267 37 1 -0.5008 0.0494 -5.1193 38 1 0.4564 -1.4052 -7.4279 39 1 1.1793 1.4713 -7.1215 40 1 -1.5251 3.2059 -10.2904 41 1 2.9811 -0.2125 -6.6928 42 1 2.4872 -1.8701 -6.1365 43 1 3.9098 -0.1674 3.9837 44 1 3.3128 -2.5234 4.3737 45 1 1.8985 -3.7207 2.7535 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100506807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:11 Heat of formation + Delta-G solvation = -91.830651 kcal Electronic energy + Delta-G solvation = -28899.680653 eV Core-core repulsion = 24553.127186 eV Total energy + Delta-G solvation = -4346.553466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -50.08339 -50.01038 -41.25677 -40.18269 -39.44544 -36.10860 -35.46476 -34.90255 -32.66245 -31.26301 -30.71633 -28.78902 -26.48171 -25.96726 -25.28541 -23.89413 -23.60613 -22.85052 -21.26966 -20.11874 -19.56933 -19.15724 -18.77226 -17.88856 -17.40285 -16.93137 -16.77867 -16.60174 -16.52405 -16.39525 -16.25525 -16.05494 -15.52326 -15.37669 -15.12845 -14.94167 -14.67517 -14.56641 -14.16422 -13.78265 -13.62646 -13.37828 -13.32160 -13.11889 -13.09400 -13.02062 -12.89848 -12.70615 -12.52430 -12.19493 -11.98697 -11.88191 -11.64721 -11.56955 -11.06109 -10.95120 -10.77683 -10.10968 -9.90479 -9.72599 -9.30467 -8.03176 -5.37001 -0.05281 0.00515 1.36708 1.41074 1.48039 1.53809 2.08089 2.44597 2.47512 2.89471 3.22463 3.26876 3.40655 3.49996 3.53786 3.72407 3.74755 3.86482 3.92102 3.99162 4.04167 4.19116 4.23533 4.25934 4.35527 4.61589 4.67422 4.70670 4.75218 4.82885 4.87602 4.91325 4.95328 5.01820 5.05601 5.07278 5.15004 5.20721 5.24160 5.30501 5.46687 5.52697 5.78359 5.80113 6.22034 6.46248 7.07172 7.14625 7.83808 8.02644 9.18258 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021120 B = 0.002246 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.419110 B =12464.970100 C =13009.742942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.070 4.070 3 H 0.124 0.876 4 C 0.516 3.484 5 O -0.571 6.571 6 N -0.715 5.715 7 C 0.140 3.860 8 C -0.105 4.105 9 C -0.154 4.154 10 C 0.146 3.854 11 N -0.733 5.733 12 C -0.232 4.232 13 H 0.056 0.944 14 C -0.066 4.066 15 N -0.984 5.984 16 Si 0.956 3.044 17 H -0.280 1.280 18 H -0.297 1.297 19 H -0.248 1.248 20 C -0.133 4.133 21 C -0.158 4.158 22 C 0.116 3.884 23 F -0.136 7.136 24 C -0.163 4.163 25 C -0.050 4.050 26 C -0.170 4.170 27 C 0.132 3.868 28 F -0.139 7.139 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.412 0.588 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.367 0.633 40 H 0.258 0.742 41 H 0.068 0.932 42 H 0.105 0.895 43 H 0.168 0.832 44 H 0.182 0.818 45 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.201 -7.113 32.937 35.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.091 4.091 3 H 0.142 0.858 4 C 0.302 3.698 5 O -0.451 6.451 6 N -0.367 5.367 7 C 0.017 3.983 8 C -0.124 4.124 9 C -0.194 4.194 10 C 0.037 3.963 11 N -0.375 5.375 12 C -0.363 4.363 13 H 0.074 0.926 14 C -0.257 4.257 15 N -0.634 5.634 16 Si 0.783 3.217 17 H -0.206 1.206 18 H -0.224 1.224 19 H -0.173 1.173 20 C -0.172 4.172 21 C -0.160 4.160 22 C 0.097 3.903 23 F -0.115 7.115 24 C -0.181 4.181 25 C -0.068 4.068 26 C -0.189 4.189 27 C 0.113 3.887 28 F -0.117 7.117 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.248 0.752 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.200 0.800 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.123 0.877 43 H 0.186 0.814 44 H 0.200 0.800 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 10.503 -7.841 32.777 35.300 hybrid contribution -0.206 1.500 -0.856 1.739 sum 10.296 -6.341 31.921 34.134 Atomic orbital electron populations 1.21863 0.90051 1.03491 1.04676 1.20194 0.99351 1.00779 0.88797 0.85821 1.20712 0.79636 0.84155 0.85254 1.90683 1.39472 1.27665 1.87251 1.45930 1.53336 1.32351 1.05056 1.21296 0.98682 0.95821 0.82505 1.22575 0.96917 0.99927 0.92941 1.23723 0.96067 1.01215 0.98424 1.21368 0.95794 0.86759 0.92421 1.42433 1.42322 1.07854 1.44885 1.19060 1.10365 0.95617 1.11254 0.92586 1.25531 1.00603 1.00529 0.99061 1.69888 1.38294 1.23871 1.31395 0.85395 0.78223 0.78731 0.79316 1.20599 1.22365 1.17261 1.23354 0.96878 1.02268 0.94739 1.19482 1.03684 0.94559 0.98295 1.17411 0.97806 0.79044 0.96089 1.91494 1.90952 1.34128 1.94925 1.21543 1.03061 0.96490 0.97015 1.21304 0.93680 0.92738 0.99088 1.21564 1.01069 1.02610 0.93624 1.17467 0.93085 0.89540 0.88614 1.91472 1.72117 1.80576 1.67564 0.92349 0.89682 0.89854 0.75167 0.91788 0.91786 0.89153 0.89292 0.92733 0.92441 0.79953 0.93340 0.91329 0.87667 0.81410 0.80041 0.82288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.88 71.98 0.64 -1.64 16 2 C -0.07 -1.36 2.79 -12.29 -0.03 -1.39 16 3 H 0.12 2.06 7.13 -2.38 -0.02 2.04 16 4 C 0.52 12.82 6.60 87.65 0.58 13.39 16 5 O -0.57 -18.38 14.55 -3.05 -0.04 -18.42 16 6 N -0.72 -15.55 5.45 -463.05 -2.52 -18.08 16 7 C 0.14 3.29 5.50 86.38 0.48 3.76 16 8 C -0.10 -2.64 3.62 -10.27 -0.04 -2.67 16 9 C -0.15 -4.56 7.44 31.18 0.23 -4.33 16 10 C 0.15 5.25 4.57 45.57 0.21 5.45 16 11 N -0.73 -33.03 5.11 -320.18 -1.64 -34.67 16 12 C -0.23 -13.06 10.45 84.03 0.88 -12.18 16 13 H 0.06 3.48 8.06 -2.91 -0.02 3.45 16 14 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 15 N -0.98 -62.86 13.97 21.65 0.30 -62.56 16 16 Si 0.96 44.65 27.74 68.60 1.90 46.55 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 18 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 19 H -0.25 -10.23 6.52 99.48 0.65 -9.58 16 20 C -0.13 -3.62 7.39 31.12 0.23 -3.39 16 21 C -0.16 -3.21 4.41 -19.78 -0.09 -3.30 16 22 C 0.12 2.02 7.25 22.37 0.16 2.19 16 23 F -0.14 -2.51 16.19 44.97 0.73 -1.79 16 24 C -0.16 -1.87 10.02 22.32 0.22 -1.64 16 25 C -0.05 -0.46 10.04 22.25 0.22 -0.24 16 26 C -0.17 -2.39 10.02 22.32 0.22 -2.16 16 27 C 0.13 2.75 6.13 22.37 0.14 2.89 16 28 F -0.14 -3.47 13.81 44.97 0.62 -2.85 16 29 H 0.06 1.10 6.31 -2.39 -0.02 1.08 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.11 7.56 -2.39 -0.02 1.10 16 32 H 0.41 7.27 7.89 -92.71 -0.73 6.54 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 1.60 7.87 -2.39 -0.02 1.58 16 35 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 36 H 0.09 2.36 7.92 -2.39 -0.02 2.34 16 37 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.06 2.20 8.10 -2.39 -0.02 2.18 16 39 H 0.37 15.69 5.76 -92.71 -0.53 15.16 16 40 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.10 2.41 8.10 -2.38 -0.02 2.39 16 43 H 0.17 1.00 8.06 -2.91 -0.02 0.97 16 44 H 0.18 0.21 8.06 -2.91 -0.02 0.19 16 45 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -75.10 376.06 3.58 -71.52 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -0.29 Total: 28.94 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: 4.52 Total: -8.65 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -3.86 Total: -115.31 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: -0.04 Total: -18.42 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 1.35 Total: -4.64 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.90 Total: 46.55 kcal Total: -75.10 3.58 -71.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100506807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.309 kcal (2) G-P(sol) polarization free energy of solvation -75.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds