Wall clock time and date at job start Tue Mar 31 2020 20:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.91380 * 2 1 4 4 C 1.55123 * 111.16397 * 236.06618 * 2 1 3 5 5 N 1.47425 * 104.94452 * 205.13109 * 4 2 1 6 6 C 1.36928 * 125.65015 * 204.04242 * 5 4 2 7 7 H 1.08005 * 120.00319 * 161.47669 * 6 5 4 8 8 C 1.38821 * 119.99879 * 341.47241 * 6 5 4 9 9 N 1.31618 * 119.99802 * 157.61577 * 8 6 5 10 10 Si 1.86791 * 120.00088 * 337.62178 * 8 6 5 11 11 H 1.48502 * 109.47241 * 84.53433 * 10 8 6 12 12 H 1.48496 * 109.47228 * 204.53235 * 10 8 6 13 13 H 1.48498 * 109.47377 * 324.53645 * 10 8 6 14 14 C 1.47025 * 108.70233 * 24.00875 * 5 4 2 15 15 C 1.54325 * 107.27101 * 358.93927 * 14 5 4 16 16 H 1.08999 * 110.72421 * 96.34434 * 15 14 5 17 17 C 1.53002 * 110.71916 * 219.44757 * 15 14 5 18 18 N 1.46504 * 109.46922 * 291.15491 * 17 15 14 19 19 C 1.34773 * 119.99958 * 180.02562 * 18 17 15 20 20 O 1.21278 * 119.99847 * 0.02562 * 19 18 17 21 21 C 1.50700 * 119.99802 * 179.97438 * 19 18 17 22 22 C 1.50700 * 109.47216 * 180.02562 * 21 19 18 23 23 C 1.38233 * 119.98999 * 264.98412 * 22 21 19 24 24 C 1.38184 * 120.05437 * 179.97438 * 23 22 21 25 25 C 1.38495 * 120.02183 * 0.04086 * 24 23 22 26 26 F 1.35103 * 120.00833 * 179.97438 * 25 24 23 27 27 C 1.38394 * 119.97696 * 359.95688 * 25 24 23 28 28 C 1.38443 * 119.94977 * 0.02562 * 27 25 24 29 29 F 1.35103 * 120.01155 * 180.02562 * 28 27 25 30 30 H 1.08997 * 109.47265 * 296.10061 * 1 2 3 31 31 H 1.08997 * 109.46986 * 56.09791 * 1 2 3 32 32 H 1.09004 * 109.47002 * 176.09496 * 1 2 3 33 33 H 1.09003 * 110.41371 * 86.20621 * 4 2 1 34 34 H 1.08997 * 110.30564 * 324.00621 * 4 2 1 35 35 H 0.96999 * 119.99984 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.88303 * 239.52348 * 14 5 4 37 37 H 1.09000 * 109.88471 * 118.35653 * 14 5 4 38 38 H 1.09005 * 109.47163 * 171.15685 * 17 15 14 39 39 H 1.08996 * 109.47606 * 51.15526 * 17 15 14 40 40 H 0.96996 * 119.99557 * 359.97438 * 18 17 15 41 41 H 1.09005 * 109.46930 * 60.00195 * 21 19 18 42 42 H 1.08997 * 109.47765 * 300.00190 * 21 19 18 43 43 H 1.08002 * 119.97203 * 0.02562 * 23 22 21 44 44 H 1.07995 * 119.98556 * 180.02562 * 24 23 22 45 45 H 1.07997 * 120.02562 * 180.29579 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0901 -0.8075 -1.2002 5 7 3.4299 -1.2475 -0.7704 6 6 4.4679 -1.5729 -1.6020 7 1 5.4786 -1.5931 -1.2217 8 6 4.2213 -1.8769 -2.9338 9 7 5.1827 -1.7583 -3.8249 10 14 2.5249 -2.4541 -3.4614 11 1 1.6552 -1.2757 -3.7069 12 1 2.6393 -3.2531 -4.7078 13 1 1.9314 -3.2923 -2.3888 14 6 3.4672 -1.2781 0.6990 15 6 2.0861 -0.8080 1.2023 16 1 1.4450 -1.6614 1.4230 17 6 2.2349 0.0876 2.4338 18 7 2.7029 -0.7143 3.5671 19 6 2.9062 -0.1327 4.7658 20 8 2.7014 1.0544 4.9064 21 6 3.3870 -0.9577 5.9317 22 6 3.5325 -0.0759 7.1450 23 6 4.7613 0.4764 7.4544 24 6 4.8962 1.2857 8.5664 25 6 3.8001 1.5435 9.3727 26 9 3.9323 2.3343 10.4601 27 6 2.5693 0.9911 9.0640 28 6 2.4353 0.1809 7.9495 29 9 1.2343 -0.3586 7.6466 30 1 -0.3633 0.4521 0.9228 31 1 -0.3633 0.5732 -0.8529 32 1 -0.3633 -1.0253 -0.0700 33 1 2.1643 -0.1734 -2.0837 34 1 1.4553 -1.6696 -1.4053 35 1 5.0105 -1.9711 -4.7554 36 1 4.2434 -0.6057 1.0643 37 1 3.6613 -2.2938 1.0439 38 1 1.2705 0.5333 2.6777 39 1 2.9571 0.8766 2.2243 40 1 2.8656 -1.6639 3.4549 41 1 4.3515 -1.4034 5.6882 42 1 2.6647 -1.7467 6.1410 43 1 5.6166 0.2760 6.8260 44 1 5.8566 1.7169 8.8068 45 1 1.7130 1.1956 9.6895 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101985834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:05 Heat of formation + Delta-G solvation = -84.004643 kcal Electronic energy + Delta-G solvation = -28585.137326 eV Core-core repulsion = 24238.923221 eV Total energy + Delta-G solvation = -4346.214105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -49.35261 -49.31978 -40.17839 -39.02629 -38.23919 -34.83389 -33.22659 -32.93877 -31.19298 -31.15443 -30.03242 -27.80815 -26.05529 -25.51768 -23.61055 -22.95422 -22.18987 -20.92558 -20.21904 -19.63931 -18.57504 -17.63185 -17.38619 -16.80487 -16.63200 -16.21415 -16.08000 -15.70836 -15.59743 -15.30189 -15.01728 -14.93450 -14.73810 -14.23473 -13.93438 -13.75144 -13.39047 -13.15800 -12.99657 -12.97543 -12.65833 -12.37405 -12.26529 -12.14342 -12.00310 -11.72766 -11.54308 -11.42233 -11.12182 -10.94311 -10.61055 -10.38795 -10.15749 -9.97397 -9.82373 -9.46859 -9.42997 -9.08948 -8.97514 -8.70787 -7.07309 -5.97359 -3.27742 0.54183 0.64440 2.52735 2.83611 3.24939 3.32380 3.45404 3.47448 3.50164 4.00685 4.13348 4.17138 4.45235 4.52146 4.64985 4.68370 4.83986 4.93820 4.97232 5.00951 5.07420 5.10677 5.39360 5.39544 5.42839 5.48147 5.55092 5.59841 5.64569 5.72258 5.81207 5.86715 5.90916 6.01549 6.06297 6.20948 6.32764 6.36589 6.37066 6.47524 6.61718 6.72217 6.77330 7.40705 7.68402 8.11835 8.28556 8.80650 9.66183 10.15174 11.18769 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024215 B = 0.002129 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.024289 B =13151.302521 C =13773.256020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 H 0.082 0.918 4 C 0.117 3.883 5 N -0.609 5.609 6 C -0.243 4.243 7 H 0.091 0.909 8 C 0.021 3.979 9 N -0.908 5.908 10 Si 0.883 3.117 11 H -0.285 1.285 12 H -0.303 1.303 13 H -0.277 1.277 14 C 0.141 3.859 15 C -0.112 4.112 16 H 0.081 0.919 17 C 0.133 3.867 18 N -0.724 5.724 19 C 0.514 3.486 20 O -0.536 6.536 21 C -0.104 4.104 22 C -0.107 4.107 23 C -0.048 4.048 24 C -0.162 4.162 25 C 0.128 3.872 26 F -0.133 7.133 27 C -0.192 4.192 28 C 0.145 3.855 29 F -0.128 7.128 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.026 0.974 35 H 0.263 0.737 36 H 0.034 0.966 37 H 0.028 0.972 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.403 0.597 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.145 0.855 44 H 0.144 0.856 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.491 2.339 25.556 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.100 0.900 4 C -0.009 4.009 5 N -0.336 5.336 6 C -0.370 4.370 7 H 0.109 0.891 8 C -0.177 4.177 9 N -0.552 5.552 10 Si 0.714 3.286 11 H -0.212 1.212 12 H -0.231 1.231 13 H -0.203 1.203 14 C 0.016 3.984 15 C -0.131 4.131 16 H 0.099 0.901 17 C 0.010 3.990 18 N -0.376 5.376 19 C 0.299 3.701 20 O -0.413 6.413 21 C -0.144 4.144 22 C -0.109 4.109 23 C -0.066 4.066 24 C -0.180 4.180 25 C 0.108 3.892 26 F -0.111 7.111 27 C -0.212 4.212 28 C 0.126 3.874 29 F -0.106 7.106 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.237 0.763 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.163 0.837 44 H 0.162 0.838 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.536 3.163 25.442 26.229 hybrid contribution -1.078 -0.846 -0.398 1.427 sum -6.614 2.318 25.044 26.007 Atomic orbital electron populations 1.21725 0.94952 1.01765 1.01413 1.22343 0.94856 0.99513 0.94965 0.89973 1.22057 0.87282 0.95629 0.95885 1.44739 1.10084 1.78166 1.00576 1.18627 0.86643 1.41404 0.90301 0.89099 1.25001 0.96919 1.00183 0.95613 1.69845 1.32965 1.50605 1.01744 0.86969 0.85599 0.79143 0.76935 1.21158 1.23057 1.20313 1.21398 0.93441 0.97943 0.85667 1.22528 0.98755 0.98205 0.93629 0.90093 1.21414 0.99797 0.93786 0.84019 1.46020 1.68352 1.13163 1.10052 1.20350 0.77779 0.88281 0.83687 1.90732 1.51024 1.15628 1.83878 1.20616 1.05078 0.97890 0.90839 1.19401 0.93049 1.01666 0.96753 1.20787 0.96668 0.93853 0.95327 1.21179 0.98830 1.01814 0.96222 1.17298 0.93863 0.92618 0.85407 1.91533 1.96480 1.71415 1.51703 1.20975 0.98499 1.01943 0.99751 1.17069 0.80695 0.95244 0.94425 1.91528 1.42754 1.83669 1.92694 0.92729 0.92520 0.92714 0.92313 0.95612 0.92692 0.94767 0.95359 0.91513 0.91025 0.76293 0.86846 0.87394 0.83728 0.83846 0.83443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.32 37.16 0.35 -1.50 16 2 C -0.10 -1.54 3.10 -88.35 -0.27 -1.81 16 3 H 0.08 1.30 8.05 -51.93 -0.42 0.89 16 4 C 0.12 2.46 4.18 -2.41 -0.01 2.45 16 5 N -0.61 -14.32 3.21 -169.93 -0.54 -14.86 16 6 C -0.24 -6.79 10.57 -15.06 -0.16 -6.95 16 7 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 8 C 0.02 0.62 5.43 -17.43 -0.09 0.52 16 9 N -0.91 -27.83 13.97 55.49 0.78 -27.05 16 10 Si 0.88 22.36 24.27 -169.99 -4.13 18.24 16 11 H -0.28 -6.93 6.49 56.52 0.37 -6.57 16 12 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 13 H -0.28 -6.89 6.66 56.52 0.38 -6.51 16 14 C 0.14 2.57 6.64 -3.06 -0.02 2.55 16 15 C -0.11 -1.61 2.45 -88.78 -0.22 -1.83 16 16 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 17 C 0.13 1.71 5.00 -4.04 -0.02 1.69 16 18 N -0.72 -7.83 5.43 -60.29 -0.33 -8.16 16 19 C 0.51 5.96 7.82 -10.99 -0.09 5.88 16 20 O -0.54 -8.42 16.03 5.56 0.09 -8.33 16 21 C -0.10 -0.82 5.60 -29.04 -0.16 -0.98 16 22 C -0.11 -0.98 4.38 -104.55 -0.46 -1.43 16 23 C -0.05 -0.37 9.68 -39.60 -0.38 -0.76 16 24 C -0.16 -1.24 10.03 -39.51 -0.40 -1.64 16 25 C 0.13 1.13 7.30 -39.43 -0.29 0.85 16 26 F -0.13 -1.24 17.27 2.25 0.04 -1.20 16 27 C -0.19 -1.74 10.01 -39.45 -0.39 -2.14 16 28 C 0.15 1.45 7.24 -39.43 -0.29 1.17 16 29 F -0.13 -1.39 16.57 2.25 0.04 -1.35 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 33 H 0.06 1.35 6.64 -51.93 -0.34 1.00 16 34 H 0.03 0.57 5.42 -51.93 -0.28 0.29 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.03 0.63 7.73 -51.93 -0.40 0.23 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 1.03 8.00 -51.93 -0.42 0.62 16 40 H 0.40 3.44 8.40 -40.82 -0.34 3.09 16 41 H 0.11 0.59 8.05 -51.93 -0.42 0.17 16 42 H 0.11 0.68 7.79 -51.93 -0.40 0.28 16 43 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 44 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 375.03 15.07 5.65 5.65 Total: -1.00 -34.16 375.03 -7.75 -41.91 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.44 Total: -0.93 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -2.90 Total: -3.92 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.10 Total: -50.07 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.09 Total: -8.33 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.08 Total: -2.55 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.13 Total: 18.24 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.16 -7.75 -41.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101985834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.091 kcal (2) G-P(sol) polarization free energy of solvation -34.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds