Wall clock time and date at job start Tue Mar 31 2020 20:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.91380 * 2 1 4 4 C 1.55123 * 111.16397 * 236.06618 * 2 1 3 5 5 N 1.47425 * 104.94452 * 205.13109 * 4 2 1 6 6 C 1.36928 * 125.65015 * 204.04242 * 5 4 2 7 7 H 1.08005 * 120.00319 * 161.47669 * 6 5 4 8 8 C 1.38821 * 119.99879 * 341.47241 * 6 5 4 9 9 N 1.31618 * 119.99802 * 157.61577 * 8 6 5 10 10 Si 1.86791 * 120.00088 * 337.62178 * 8 6 5 11 11 H 1.48502 * 109.47241 * 84.53433 * 10 8 6 12 12 H 1.48496 * 109.47228 * 204.53235 * 10 8 6 13 13 H 1.48498 * 109.47377 * 324.53645 * 10 8 6 14 14 C 1.47025 * 108.70233 * 24.00875 * 5 4 2 15 15 C 1.54325 * 107.27101 * 358.93927 * 14 5 4 16 16 H 1.08999 * 110.72421 * 96.34434 * 15 14 5 17 17 C 1.53002 * 110.71916 * 219.44757 * 15 14 5 18 18 N 1.46504 * 109.46922 * 291.15491 * 17 15 14 19 19 C 1.34773 * 119.99958 * 180.02562 * 18 17 15 20 20 O 1.21278 * 119.99847 * 0.02562 * 19 18 17 21 21 C 1.50700 * 119.99802 * 179.97438 * 19 18 17 22 22 C 1.50700 * 109.47216 * 180.02562 * 21 19 18 23 23 C 1.38233 * 119.98999 * 264.98412 * 22 21 19 24 24 C 1.38184 * 120.05437 * 179.97438 * 23 22 21 25 25 C 1.38495 * 120.02183 * 0.04086 * 24 23 22 26 26 F 1.35103 * 120.00833 * 179.97438 * 25 24 23 27 27 C 1.38394 * 119.97696 * 359.95688 * 25 24 23 28 28 C 1.38443 * 119.94977 * 0.02562 * 27 25 24 29 29 F 1.35103 * 120.01155 * 180.02562 * 28 27 25 30 30 H 1.08997 * 109.47265 * 296.10061 * 1 2 3 31 31 H 1.08997 * 109.46986 * 56.09791 * 1 2 3 32 32 H 1.09004 * 109.47002 * 176.09496 * 1 2 3 33 33 H 1.09003 * 110.41371 * 86.20621 * 4 2 1 34 34 H 1.08997 * 110.30564 * 324.00621 * 4 2 1 35 35 H 0.96999 * 119.99984 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.88303 * 239.52348 * 14 5 4 37 37 H 1.09000 * 109.88471 * 118.35653 * 14 5 4 38 38 H 1.09005 * 109.47163 * 171.15685 * 17 15 14 39 39 H 1.08996 * 109.47606 * 51.15526 * 17 15 14 40 40 H 0.96996 * 119.99557 * 359.97438 * 18 17 15 41 41 H 1.09005 * 109.46930 * 60.00195 * 21 19 18 42 42 H 1.08997 * 109.47765 * 300.00190 * 21 19 18 43 43 H 1.08002 * 119.97203 * 0.02562 * 23 22 21 44 44 H 1.07995 * 119.98556 * 180.02562 * 24 23 22 45 45 H 1.07997 * 120.02562 * 180.29579 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0901 -0.8075 -1.2002 5 7 3.4299 -1.2475 -0.7704 6 6 4.4679 -1.5729 -1.6020 7 1 5.4786 -1.5931 -1.2217 8 6 4.2213 -1.8769 -2.9338 9 7 5.1827 -1.7583 -3.8249 10 14 2.5249 -2.4541 -3.4614 11 1 1.6552 -1.2757 -3.7069 12 1 2.6393 -3.2531 -4.7078 13 1 1.9314 -3.2923 -2.3888 14 6 3.4672 -1.2781 0.6990 15 6 2.0861 -0.8080 1.2023 16 1 1.4450 -1.6614 1.4230 17 6 2.2349 0.0876 2.4338 18 7 2.7029 -0.7143 3.5671 19 6 2.9062 -0.1327 4.7658 20 8 2.7014 1.0544 4.9064 21 6 3.3870 -0.9577 5.9317 22 6 3.5325 -0.0759 7.1450 23 6 4.7613 0.4764 7.4544 24 6 4.8962 1.2857 8.5664 25 6 3.8001 1.5435 9.3727 26 9 3.9323 2.3343 10.4601 27 6 2.5693 0.9911 9.0640 28 6 2.4353 0.1809 7.9495 29 9 1.2343 -0.3586 7.6466 30 1 -0.3633 0.4521 0.9228 31 1 -0.3633 0.5732 -0.8529 32 1 -0.3633 -1.0253 -0.0700 33 1 2.1643 -0.1734 -2.0837 34 1 1.4553 -1.6696 -1.4053 35 1 5.0105 -1.9711 -4.7554 36 1 4.2434 -0.6057 1.0643 37 1 3.6613 -2.2938 1.0439 38 1 1.2705 0.5333 2.6777 39 1 2.9571 0.8766 2.2243 40 1 2.8656 -1.6639 3.4549 41 1 4.3515 -1.4034 5.6882 42 1 2.6647 -1.7467 6.1410 43 1 5.6166 0.2760 6.8260 44 1 5.8566 1.7169 8.8068 45 1 1.7130 1.1956 9.6895 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101985834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:04 Heat of formation + Delta-G solvation = -106.106158 kcal Electronic energy + Delta-G solvation = -28586.095720 eV Core-core repulsion = 24238.923221 eV Total energy + Delta-G solvation = -4347.172499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.06404 -50.02697 -41.06242 -40.02314 -39.35693 -36.07852 -34.74911 -33.78593 -32.95064 -31.81881 -31.24102 -28.71773 -27.67233 -26.77653 -24.33687 -24.20388 -23.13376 -22.19902 -21.44214 -20.85556 -19.26022 -18.93717 -18.30189 -18.14611 -17.50078 -17.01980 -16.93360 -16.79512 -16.73358 -16.33359 -16.15415 -16.00189 -15.44893 -15.35024 -15.10785 -14.84397 -14.69662 -14.56605 -14.21530 -14.11507 -13.88260 -13.50519 -13.29711 -12.97390 -12.94797 -12.85158 -12.76675 -12.62860 -12.48121 -12.33576 -12.25149 -11.75581 -11.66640 -11.50836 -11.32929 -10.94381 -10.79089 -10.07903 -10.04760 -9.64317 -9.04699 -8.18598 -5.44660 -0.11260 0.01514 1.30532 1.37972 1.47155 1.66669 2.09983 2.41225 2.49298 2.85050 3.02515 3.30687 3.36618 3.50977 3.57841 3.65189 3.77327 3.81741 3.89028 3.99927 4.11409 4.28566 4.37156 4.44681 4.50594 4.55343 4.60537 4.72109 4.78114 4.80578 4.81856 4.86543 4.92899 4.94583 5.04327 5.04769 5.07680 5.20697 5.23902 5.33933 5.44029 5.51533 5.68333 5.74890 6.09888 6.58076 6.76641 7.27477 7.54188 8.11152 9.01301 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024215 B = 0.002129 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.024289 B =13151.302521 C =13773.256020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 H 0.079 0.921 4 C 0.108 3.892 5 N -0.630 5.630 6 C -0.234 4.234 7 H 0.059 0.941 8 C -0.040 4.040 9 N -0.957 5.957 10 Si 0.947 3.053 11 H -0.271 1.271 12 H -0.309 1.309 13 H -0.265 1.265 14 C 0.136 3.864 15 C -0.091 4.091 16 H 0.104 0.896 17 C 0.144 3.856 18 N -0.717 5.717 19 C 0.512 3.488 20 O -0.581 6.581 21 C -0.099 4.099 22 C -0.116 4.116 23 C -0.050 4.050 24 C -0.158 4.158 25 C 0.114 3.886 26 F -0.138 7.138 27 C -0.200 4.200 28 C 0.124 3.876 29 F -0.138 7.138 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.033 0.967 34 H 0.027 0.973 35 H 0.262 0.738 36 H 0.028 0.972 37 H 0.040 0.960 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.416 0.584 41 H 0.146 0.854 42 H 0.126 0.874 43 H 0.170 0.830 44 H 0.165 0.835 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.050 1.691 27.268 28.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.109 4.109 3 H 0.098 0.902 4 C -0.016 4.016 5 N -0.356 5.356 6 C -0.363 4.363 7 H 0.077 0.923 8 C -0.234 4.234 9 N -0.604 5.604 10 Si 0.775 3.225 11 H -0.198 1.198 12 H -0.238 1.238 13 H -0.190 1.190 14 C 0.012 3.988 15 C -0.110 4.110 16 H 0.122 0.878 17 C 0.019 3.981 18 N -0.369 5.369 19 C 0.300 3.700 20 O -0.461 6.461 21 C -0.138 4.138 22 C -0.118 4.118 23 C -0.068 4.068 24 C -0.177 4.177 25 C 0.094 3.906 26 F -0.117 7.117 27 C -0.219 4.219 28 C 0.104 3.896 29 F -0.116 7.116 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.046 0.954 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.253 0.747 41 H 0.164 0.836 42 H 0.144 0.856 43 H 0.187 0.813 44 H 0.183 0.817 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -7.124 2.494 27.200 28.228 hybrid contribution -0.485 -0.580 -0.852 1.139 sum -7.609 1.913 26.348 27.492 Atomic orbital electron populations 1.21708 0.92154 1.02551 1.02919 1.22297 0.97017 0.98622 0.92959 0.90238 1.22173 0.86262 0.95836 0.97344 1.44875 1.10047 1.78198 1.02529 1.18582 0.86921 1.39792 0.90958 0.92330 1.25658 1.00704 1.01210 0.95831 1.69976 1.35415 1.52968 1.02038 0.85940 0.81352 0.78882 0.76302 1.19750 1.23799 1.19035 1.21587 0.95906 0.98597 0.82708 1.22391 0.96329 0.98832 0.93475 0.87804 1.21159 0.99760 0.93150 0.83986 1.45930 1.67871 1.13701 1.09408 1.20964 0.76719 0.87974 0.84376 1.90718 1.53009 1.17760 1.84601 1.20692 1.07139 0.97377 0.88577 1.19659 0.93197 1.01933 0.96990 1.21133 0.97041 0.93182 0.95432 1.21488 0.99342 1.01175 0.95690 1.17482 0.94346 0.93025 0.85708 1.91517 1.96515 1.71626 1.52027 1.21121 0.99073 1.01872 0.99847 1.17308 0.80814 0.96173 0.95281 1.91495 1.43345 1.83919 1.92841 0.90294 0.92210 0.92117 0.94867 0.95530 0.92920 0.95355 0.94217 0.90763 0.92864 0.74705 0.83630 0.85578 0.81275 0.81709 0.82697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.32 71.98 0.67 -2.36 16 2 C -0.09 -2.60 3.10 -9.32 -0.03 -2.63 16 3 H 0.08 2.37 8.05 -2.39 -0.02 2.36 16 4 C 0.11 4.40 4.18 86.93 0.36 4.77 16 5 N -0.63 -29.26 3.21 -691.54 -2.22 -31.47 16 6 C -0.23 -13.34 10.57 84.04 0.89 -12.45 16 7 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 8 C -0.04 -2.34 5.43 84.86 0.46 -1.88 16 9 N -0.96 -60.53 13.97 21.65 0.30 -60.23 16 10 Si 0.95 46.53 24.27 68.60 1.66 48.20 16 11 H -0.27 -12.62 6.49 99.48 0.65 -11.97 16 12 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 13 H -0.27 -12.36 6.66 99.48 0.66 -11.70 16 14 C 0.14 4.74 6.64 86.73 0.58 5.32 16 15 C -0.09 -2.34 2.45 -9.60 -0.02 -2.36 16 16 H 0.10 2.28 8.04 -2.39 -0.02 2.26 16 17 C 0.14 3.30 5.00 86.38 0.43 3.73 16 18 N -0.72 -13.35 5.43 -463.05 -2.51 -15.86 16 19 C 0.51 10.64 7.82 87.66 0.69 11.33 16 20 O -0.58 -17.43 16.03 -3.02 -0.05 -17.48 16 21 C -0.10 -1.25 5.60 29.10 0.16 -1.08 16 22 C -0.12 -1.88 4.38 -19.81 -0.09 -1.97 16 23 C -0.05 -0.65 9.68 22.26 0.22 -0.44 16 24 C -0.16 -2.13 10.03 22.32 0.22 -1.91 16 25 C 0.11 1.92 7.30 22.37 0.16 2.08 16 26 F -0.14 -2.48 17.27 44.97 0.78 -1.71 16 27 C -0.20 -3.52 10.01 22.36 0.22 -3.29 16 28 C 0.12 2.35 7.24 22.37 0.16 2.51 16 29 F -0.14 -2.86 16.57 44.97 0.74 -2.11 16 30 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.31 8.08 -2.39 -0.02 1.29 16 33 H 0.03 1.50 6.64 -2.39 -0.02 1.49 16 34 H 0.03 1.10 5.42 -2.39 -0.01 1.09 16 35 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 36 H 0.03 1.02 7.73 -2.39 -0.02 1.00 16 37 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.05 1.45 8.00 -2.39 -0.02 1.43 16 40 H 0.42 5.56 8.40 -92.71 -0.78 4.78 16 41 H 0.15 0.89 8.05 -2.38 -0.02 0.87 16 42 H 0.13 1.17 7.79 -2.39 -0.02 1.15 16 43 H 0.17 1.29 8.06 -2.91 -0.02 1.27 16 44 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 45 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -76.79 375.03 3.93 -72.86 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: 0.13 Total: 8.44 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 5.09 Total: -0.63 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -4.43 Total: -107.57 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.05 Total: -17.48 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 1.52 Total: -3.82 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.66 Total: 48.20 kcal Total: -76.79 3.93 -72.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101985834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.242 kcal (2) G-P(sol) polarization free energy of solvation -76.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds