Wall clock time and date at job start Tue Mar 31 2020 20:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.88386 * 2 1 4 4 C 1.54910 * 111.00400 * 236.12379 * 2 1 3 5 5 N 1.47426 * 104.83073 * 204.91488 * 4 2 1 6 6 C 1.36945 * 125.64585 * 204.09314 * 5 4 2 7 7 H 1.08000 * 119.99441 * 180.02562 * 6 5 4 8 8 C 1.38811 * 120.00031 * 0.02562 * 6 5 4 9 9 N 1.31619 * 120.00283 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99811 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46722 * 90.00437 * 10 8 6 12 12 H 1.48497 * 109.47157 * 210.00127 * 10 8 6 13 13 H 1.48494 * 109.47346 * 330.00290 * 10 8 6 14 14 C 1.47019 * 108.70491 * 24.35098 * 5 4 2 15 15 C 1.54329 * 107.26641 * 358.59050 * 14 5 4 16 16 H 1.08999 * 110.67409 * 96.51533 * 15 14 5 17 17 C 1.53004 * 110.85248 * 219.67101 * 15 14 5 18 18 N 1.46506 * 109.46678 * 288.69107 * 17 15 14 19 19 C 1.34773 * 119.99358 * 179.97438 * 18 17 15 20 20 O 1.21275 * 120.00551 * 359.97438 * 19 18 17 21 21 C 1.50707 * 119.99433 * 179.97438 * 19 18 17 22 22 C 1.50698 * 109.46749 * 179.97438 * 21 19 18 23 23 C 1.38212 * 119.99828 * 100.00158 * 22 21 19 24 24 C 1.38429 * 119.99929 * 179.97438 * 23 22 21 25 25 F 1.35099 * 120.00079 * 179.97438 * 24 23 22 26 26 C 1.38472 * 120.00011 * 0.02562 * 24 23 22 27 27 C 1.38162 * 120.00141 * 359.95566 * 26 24 23 28 28 C 1.38429 * 120.00099 * 279.72132 * 22 21 19 29 29 F 1.35094 * 119.99954 * 0.02980 * 28 22 21 30 30 H 1.09003 * 109.46828 * 182.42726 * 1 2 3 31 31 H 1.09002 * 109.47003 * 302.41913 * 1 2 3 32 32 H 1.09001 * 109.47186 * 62.42637 * 1 2 3 33 33 H 1.09002 * 110.36832 * 86.07728 * 4 2 1 34 34 H 1.08998 * 110.46009 * 323.79475 * 4 2 1 35 35 H 0.96998 * 120.00243 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.87922 * 118.13261 * 14 5 4 37 37 H 1.08999 * 109.88651 * 239.29248 * 14 5 4 38 38 H 1.08993 * 109.47036 * 48.68547 * 17 15 14 39 39 H 1.09000 * 109.47369 * 168.69187 * 17 15 14 40 40 H 0.97002 * 119.99812 * 359.97438 * 18 17 15 41 41 H 1.08993 * 109.46944 * 299.99581 * 21 19 18 42 42 H 1.09000 * 109.47066 * 59.99978 * 21 19 18 43 43 H 1.07998 * 120.00022 * 359.97438 * 23 22 21 44 44 H 1.08003 * 119.99951 * 179.97438 * 26 24 23 45 45 H 1.07998 * 120.00474 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8061 -1.2007 5 7 3.4271 -1.2427 -0.7739 6 6 4.4641 -1.5659 -1.6080 7 1 5.4125 -1.8763 -1.1950 8 6 4.2960 -1.4946 -2.9840 9 7 3.1403 -1.1159 -3.4872 10 14 5.7107 -1.9349 -4.1217 11 1 5.6572 -3.3844 -4.4400 12 1 5.6002 -1.1482 -5.3763 13 1 6.9993 -1.6221 -3.4532 14 6 3.4658 -1.2795 0.6953 15 6 2.0863 -0.8084 1.2019 16 1 1.4452 -1.6619 1.4222 17 6 2.2350 0.0867 2.4338 18 7 2.6470 -0.7261 3.5810 19 6 2.8413 -0.1467 4.7822 20 8 2.6756 1.0475 4.9134 21 6 3.2645 -0.9829 5.9624 22 6 3.4123 -0.1011 7.1755 23 6 2.4035 -0.0486 8.1188 24 6 2.5395 0.7610 9.2334 25 9 1.5532 0.8127 10.1552 26 6 3.6861 1.5186 9.4030 27 6 4.6947 1.4659 8.4603 28 6 4.5610 0.6519 7.3480 29 9 5.5492 0.5967 6.4286 30 1 -0.3633 -1.0268 0.0435 31 1 -0.3633 0.5510 0.8675 32 1 -0.3633 0.4757 -0.9109 33 1 2.1560 -0.1711 -2.0838 34 1 1.4525 -1.6698 -1.4050 35 1 3.0230 -1.0657 -4.4488 36 1 3.6602 -2.2967 1.0356 37 1 4.2425 -0.6088 1.0627 38 1 2.9889 0.8496 2.2397 39 1 1.2807 0.5660 2.6521 40 1 2.7798 -1.6812 3.4759 41 1 2.5101 -1.7452 6.1567 42 1 4.2184 -1.4630 5.7442 43 1 1.5091 -0.6393 7.9863 44 1 3.7920 2.1506 10.2724 45 1 5.5891 2.0565 8.5927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102288408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:08 Heat of formation + Delta-G solvation = -85.783344 kcal Electronic energy + Delta-G solvation = -28600.984085 eV Core-core repulsion = 24254.692850 eV Total energy + Delta-G solvation = -4346.291235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.24981 -49.16352 -40.10579 -38.92091 -37.93724 -34.69857 -33.40994 -32.92193 -30.77460 -30.57123 -29.62255 -27.90305 -25.96589 -25.02873 -23.46503 -23.00036 -22.24294 -20.66582 -19.87355 -19.29170 -18.01297 -17.58056 -17.54812 -17.24797 -16.73945 -16.04289 -15.96829 -15.57457 -15.48360 -14.95205 -14.72857 -14.60030 -14.33291 -13.88648 -13.78462 -13.59584 -13.46315 -13.19258 -12.98616 -12.77224 -12.64709 -12.19064 -12.10426 -11.92723 -11.56740 -11.44868 -11.40848 -11.16373 -10.89609 -10.81110 -10.27656 -10.09880 -10.00385 -9.91927 -9.78524 -9.52028 -9.35678 -8.99432 -8.84054 -8.66483 -6.84779 -5.66746 -3.08577 0.58777 0.65218 2.58092 2.87714 3.30055 3.38840 3.43960 3.45986 3.77261 3.86733 4.07182 4.25134 4.47119 4.55580 4.72787 4.75271 4.92283 5.08045 5.11311 5.22508 5.27911 5.34715 5.48747 5.55166 5.56724 5.61151 5.68593 5.74113 5.75507 5.85872 6.04950 6.10327 6.18894 6.25219 6.41629 6.42104 6.51430 6.58150 6.60172 6.77781 6.93083 7.48261 7.52120 7.61673 7.85102 8.18175 8.35179 9.20790 9.81656 10.46368 11.37025 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020200 B = 0.002173 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.795046 B =12881.023108 C =13872.517478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 H 0.071 0.929 4 C 0.159 3.841 5 N -0.605 5.605 6 C -0.223 4.223 7 H 0.077 0.923 8 C -0.012 4.012 9 N -0.922 5.922 10 Si 0.914 3.086 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.141 3.859 15 C -0.109 4.109 16 H 0.076 0.924 17 C 0.133 3.867 18 N -0.723 5.723 19 C 0.513 3.487 20 O -0.536 6.536 21 C -0.106 4.106 22 C -0.069 4.069 23 C -0.115 4.115 24 C 0.088 3.912 25 F -0.136 7.136 26 C -0.126 4.126 27 C -0.124 4.124 28 C 0.109 3.891 29 F -0.129 7.129 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.106 0.894 34 H 0.013 0.987 35 H 0.252 0.748 36 H 0.018 0.982 37 H 0.024 0.976 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.402 0.598 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.449 1.146 24.890 25.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 H 0.090 0.910 4 C 0.034 3.966 5 N -0.331 5.331 6 C -0.351 4.351 7 H 0.095 0.905 8 C -0.207 4.207 9 N -0.571 5.571 10 Si 0.745 3.255 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.207 1.207 14 C 0.015 3.985 15 C -0.129 4.129 16 H 0.095 0.905 17 C 0.010 3.990 18 N -0.374 5.374 19 C 0.299 3.701 20 O -0.413 6.413 21 C -0.146 4.146 22 C -0.071 4.071 23 C -0.134 4.134 24 C 0.069 3.931 25 F -0.115 7.115 26 C -0.144 4.144 27 C -0.143 4.143 28 C 0.090 3.910 29 F -0.107 7.107 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.124 0.876 34 H 0.031 0.969 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.042 0.958 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.236 0.764 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.163 0.837 44 H 0.163 0.837 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.507 2.005 24.727 24.935 hybrid contribution 0.774 -0.792 -0.663 1.291 sum -1.732 1.214 24.064 24.157 Atomic orbital electron populations 1.21650 0.95499 1.01178 1.00864 1.22598 0.94579 0.99547 0.96402 0.91034 1.21981 0.84026 0.95909 0.94680 1.44495 1.10590 1.78962 0.99034 1.19073 0.91051 1.37755 0.87215 0.90544 1.24790 0.97301 1.01974 0.96636 1.69792 1.22441 1.53760 1.11065 0.86074 0.81236 0.77803 0.80399 1.21647 1.21630 1.20701 1.21340 0.93445 0.97065 0.86636 1.22502 0.98635 0.98083 0.93650 0.90538 1.21470 1.00115 0.93700 0.83755 1.46053 1.69688 1.12391 1.09292 1.20280 0.77557 0.88435 0.83871 1.90730 1.50905 1.15191 1.84475 1.20653 1.05351 0.97845 0.90775 1.19147 0.93047 0.98653 0.96215 1.20859 0.99589 1.00033 0.92882 1.17572 0.86984 0.99849 0.88721 1.91519 1.60184 1.95329 1.64453 1.20978 0.92420 1.00255 1.00796 1.20974 1.00673 0.99487 0.93171 1.17490 0.86464 0.98701 0.88389 1.91537 1.59555 1.94970 1.64685 0.93046 0.93702 0.92560 0.87599 0.96916 0.93719 0.96414 0.95806 0.91255 0.91600 0.76387 0.87024 0.87014 0.83731 0.83735 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.29 37.16 0.35 -1.68 16 2 C -0.11 -2.02 3.09 -88.47 -0.27 -2.29 16 3 H 0.07 1.34 8.05 -51.93 -0.42 0.92 16 4 C 0.16 3.76 5.35 -2.53 -0.01 3.75 16 5 N -0.61 -15.27 3.39 -170.07 -0.58 -15.85 16 6 C -0.22 -6.17 10.27 -15.06 -0.15 -6.33 16 7 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 8 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 9 N -0.92 -26.70 10.09 55.49 0.56 -26.14 16 10 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 C 0.14 2.82 6.76 -3.06 -0.02 2.80 16 15 C -0.11 -1.77 2.42 -88.78 -0.22 -1.98 16 16 H 0.08 1.15 8.01 -51.93 -0.42 0.73 16 17 C 0.13 1.92 5.02 -4.04 -0.02 1.90 16 18 N -0.72 -8.67 5.47 -60.29 -0.33 -9.00 16 19 C 0.51 6.49 7.82 -10.98 -0.09 6.40 16 20 O -0.54 -8.99 15.96 5.56 0.09 -8.90 16 21 C -0.11 -0.92 5.56 -29.03 -0.16 -1.08 16 22 C -0.07 -0.68 4.42 -104.56 -0.46 -1.14 16 23 C -0.11 -1.02 9.65 -39.52 -0.38 -1.40 16 24 C 0.09 0.79 7.30 -39.42 -0.29 0.51 16 25 F -0.14 -1.29 17.27 2.25 0.04 -1.25 16 26 C -0.13 -0.98 10.02 -39.52 -0.40 -1.38 16 27 C -0.12 -1.05 10.02 -39.52 -0.40 -1.45 16 28 C 0.11 1.16 7.14 -39.42 -0.28 0.88 16 29 F -0.13 -1.57 16.65 2.25 0.04 -1.53 16 30 H 0.05 0.76 8.11 -51.93 -0.42 0.33 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.11 2.86 5.87 -51.93 -0.31 2.56 16 34 H 0.01 0.32 8.04 -51.93 -0.42 -0.09 16 35 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.02 0.49 7.69 -51.93 -0.40 0.09 16 38 H 0.07 1.14 7.94 -51.93 -0.41 0.73 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.40 3.86 8.47 -40.82 -0.35 3.51 16 41 H 0.11 0.62 8.00 -51.93 -0.42 0.20 16 42 H 0.11 0.82 7.93 -51.93 -0.41 0.41 16 43 H 0.14 0.99 8.04 -52.49 -0.42 0.57 16 44 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 45 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 380.32 15.07 5.73 5.73 Total: -1.00 -33.21 380.32 -8.84 -42.05 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.47 Total: 0.84 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -2.90 Total: -2.92 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.35 Total: -50.99 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.08 Total: -2.78 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.21 -8.84 -42.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102288408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.735 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds