Wall clock time and date at job start Tue Mar 31 2020 20:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.88386 * 2 1 4 4 C 1.54910 * 111.00400 * 236.12379 * 2 1 3 5 5 N 1.47426 * 104.83073 * 204.91488 * 4 2 1 6 6 C 1.36945 * 125.64585 * 204.09314 * 5 4 2 7 7 H 1.08000 * 119.99441 * 180.02562 * 6 5 4 8 8 C 1.38811 * 120.00031 * 0.02562 * 6 5 4 9 9 N 1.31619 * 120.00283 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99811 * 179.97438 * 8 6 5 11 11 H 1.48507 * 109.46722 * 90.00437 * 10 8 6 12 12 H 1.48497 * 109.47157 * 210.00127 * 10 8 6 13 13 H 1.48494 * 109.47346 * 330.00290 * 10 8 6 14 14 C 1.47019 * 108.70491 * 24.35098 * 5 4 2 15 15 C 1.54329 * 107.26641 * 358.59050 * 14 5 4 16 16 H 1.08999 * 110.67409 * 96.51533 * 15 14 5 17 17 C 1.53004 * 110.85248 * 219.67101 * 15 14 5 18 18 N 1.46506 * 109.46678 * 288.69107 * 17 15 14 19 19 C 1.34773 * 119.99358 * 179.97438 * 18 17 15 20 20 O 1.21275 * 120.00551 * 359.97438 * 19 18 17 21 21 C 1.50707 * 119.99433 * 179.97438 * 19 18 17 22 22 C 1.50698 * 109.46749 * 179.97438 * 21 19 18 23 23 C 1.38212 * 119.99828 * 100.00158 * 22 21 19 24 24 C 1.38429 * 119.99929 * 179.97438 * 23 22 21 25 25 F 1.35099 * 120.00079 * 179.97438 * 24 23 22 26 26 C 1.38472 * 120.00011 * 0.02562 * 24 23 22 27 27 C 1.38162 * 120.00141 * 359.95566 * 26 24 23 28 28 C 1.38429 * 120.00099 * 279.72132 * 22 21 19 29 29 F 1.35094 * 119.99954 * 0.02980 * 28 22 21 30 30 H 1.09003 * 109.46828 * 182.42726 * 1 2 3 31 31 H 1.09002 * 109.47003 * 302.41913 * 1 2 3 32 32 H 1.09001 * 109.47186 * 62.42637 * 1 2 3 33 33 H 1.09002 * 110.36832 * 86.07728 * 4 2 1 34 34 H 1.08998 * 110.46009 * 323.79475 * 4 2 1 35 35 H 0.96998 * 120.00243 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.87922 * 118.13261 * 14 5 4 37 37 H 1.08999 * 109.88651 * 239.29248 * 14 5 4 38 38 H 1.08993 * 109.47036 * 48.68547 * 17 15 14 39 39 H 1.09000 * 109.47369 * 168.69187 * 17 15 14 40 40 H 0.97002 * 119.99812 * 359.97438 * 18 17 15 41 41 H 1.08993 * 109.46944 * 299.99581 * 21 19 18 42 42 H 1.09000 * 109.47066 * 59.99978 * 21 19 18 43 43 H 1.07998 * 120.00022 * 359.97438 * 23 22 21 44 44 H 1.08003 * 119.99951 * 179.97438 * 26 24 23 45 45 H 1.07998 * 120.00474 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8061 -1.2007 5 7 3.4271 -1.2427 -0.7739 6 6 4.4641 -1.5659 -1.6080 7 1 5.4125 -1.8763 -1.1950 8 6 4.2960 -1.4946 -2.9840 9 7 3.1403 -1.1159 -3.4872 10 14 5.7107 -1.9349 -4.1217 11 1 5.6572 -3.3844 -4.4400 12 1 5.6002 -1.1482 -5.3763 13 1 6.9993 -1.6221 -3.4532 14 6 3.4658 -1.2795 0.6953 15 6 2.0863 -0.8084 1.2019 16 1 1.4452 -1.6619 1.4222 17 6 2.2350 0.0867 2.4338 18 7 2.6470 -0.7261 3.5810 19 6 2.8413 -0.1467 4.7822 20 8 2.6756 1.0475 4.9134 21 6 3.2645 -0.9829 5.9624 22 6 3.4123 -0.1011 7.1755 23 6 2.4035 -0.0486 8.1188 24 6 2.5395 0.7610 9.2334 25 9 1.5532 0.8127 10.1552 26 6 3.6861 1.5186 9.4030 27 6 4.6947 1.4659 8.4603 28 6 4.5610 0.6519 7.3480 29 9 5.5492 0.5967 6.4286 30 1 -0.3633 -1.0268 0.0435 31 1 -0.3633 0.5510 0.8675 32 1 -0.3633 0.4757 -0.9109 33 1 2.1560 -0.1711 -2.0838 34 1 1.4525 -1.6698 -1.4050 35 1 3.0230 -1.0657 -4.4488 36 1 3.6602 -2.2967 1.0356 37 1 4.2425 -0.6088 1.0627 38 1 2.9889 0.8496 2.2397 39 1 1.2807 0.5660 2.6521 40 1 2.7798 -1.6812 3.4759 41 1 2.5101 -1.7452 6.1567 42 1 4.2184 -1.4630 5.7442 43 1 1.5091 -0.6393 7.9863 44 1 3.7920 2.1506 10.2724 45 1 5.5891 2.0565 8.5927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102288408.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:07 Heat of formation + Delta-G solvation = -105.570555 kcal Electronic energy + Delta-G solvation = -28601.842123 eV Core-core repulsion = 24254.692850 eV Total energy + Delta-G solvation = -4347.149273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.97737 -49.93624 -41.06002 -39.88298 -39.28287 -36.05767 -34.67802 -34.05767 -32.56006 -31.31053 -30.85809 -28.85799 -27.74983 -26.48187 -24.57653 -24.02424 -23.16513 -21.79866 -21.45454 -20.67852 -18.92474 -18.70853 -18.30416 -18.26202 -18.03680 -17.23795 -16.82181 -16.64855 -16.47118 -16.34309 -15.83778 -15.58533 -15.39986 -15.29951 -14.77587 -14.71222 -14.51048 -14.30510 -14.14790 -13.91296 -13.69525 -13.52338 -13.38727 -13.08629 -12.88566 -12.79150 -12.74785 -12.65938 -12.45646 -12.05470 -11.97166 -11.84148 -11.59856 -11.41180 -11.29297 -10.92535 -10.73981 -10.13654 -10.07724 -9.54843 -8.87604 -7.77392 -5.21685 -0.09829 0.01290 1.45794 1.47466 1.56178 1.63057 2.09160 2.47203 2.49285 3.11381 3.19950 3.31737 3.42203 3.61617 3.64027 3.76486 3.89513 3.94527 3.98963 4.03451 4.11902 4.35474 4.39241 4.49184 4.51129 4.63375 4.73331 4.75893 4.82567 4.86732 4.93695 4.98658 4.99010 5.02047 5.10104 5.10266 5.17429 5.36085 5.40113 5.44898 5.51253 5.72937 5.76685 5.85090 6.32281 6.55642 7.11413 7.24424 7.79383 8.42741 9.24097 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020200 B = 0.002173 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.795046 B =12881.023108 C =13872.517478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.062 0.938 4 C 0.162 3.838 5 N -0.630 5.630 6 C -0.238 4.238 7 H 0.079 0.921 8 C -0.068 4.068 9 N -0.948 5.948 10 Si 0.979 3.021 11 H -0.285 1.285 12 H -0.294 1.294 13 H -0.271 1.271 14 C 0.137 3.863 15 C -0.088 4.088 16 H 0.099 0.901 17 C 0.146 3.854 18 N -0.715 5.715 19 C 0.512 3.488 20 O -0.581 6.581 21 C -0.100 4.100 22 C -0.082 4.082 23 C -0.116 4.116 24 C 0.076 3.924 25 F -0.140 7.140 26 C -0.121 4.121 27 C -0.126 4.126 28 C 0.081 3.919 29 F -0.145 7.145 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.067 0.933 34 H -0.008 1.008 35 H 0.247 0.753 36 H 0.031 0.969 37 H 0.017 0.983 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.416 0.584 41 H 0.149 0.851 42 H 0.125 0.875 43 H 0.164 0.836 44 H 0.170 0.830 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.778 0.392 27.095 27.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.122 4.122 3 H 0.081 0.919 4 C 0.037 3.963 5 N -0.356 5.356 6 C -0.367 4.367 7 H 0.097 0.903 8 C -0.261 4.261 9 N -0.598 5.598 10 Si 0.807 3.193 11 H -0.212 1.212 12 H -0.220 1.220 13 H -0.196 1.196 14 C 0.012 3.988 15 C -0.107 4.107 16 H 0.117 0.883 17 C 0.021 3.979 18 N -0.367 5.367 19 C 0.299 3.701 20 O -0.461 6.461 21 C -0.139 4.139 22 C -0.083 4.083 23 C -0.135 4.135 24 C 0.057 3.943 25 F -0.119 7.119 26 C -0.140 4.140 27 C -0.145 4.145 28 C 0.062 3.938 29 F -0.123 7.123 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.010 0.990 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.035 0.965 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.253 0.747 41 H 0.167 0.833 42 H 0.143 0.857 43 H 0.182 0.818 44 H 0.187 0.813 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.828 1.217 26.968 27.143 hybrid contribution 0.896 -0.535 -1.295 1.663 sum -1.932 0.681 25.673 25.755 Atomic orbital electron populations 1.21597 0.92697 1.02107 1.02021 1.22435 0.96783 0.98272 0.94714 0.91911 1.21755 0.83721 0.94972 0.95870 1.44828 1.10538 1.78994 1.01211 1.19441 0.91971 1.37274 0.88060 0.90310 1.25628 0.99744 1.02557 0.98147 1.70058 1.24138 1.54831 1.10768 0.85069 0.78758 0.77353 0.78100 1.21202 1.22029 1.19606 1.21519 0.95634 0.97670 0.83946 1.22332 0.96398 0.98564 0.93366 0.88307 1.21148 0.99898 0.92985 0.83837 1.45932 1.69313 1.12922 1.08558 1.20944 0.76346 0.88187 0.84602 1.90712 1.52875 1.17337 1.85191 1.20716 1.07118 0.97666 0.88400 1.19321 0.93048 0.99057 0.96899 1.21087 0.99927 1.00012 0.92485 1.17797 0.87297 1.00325 0.88873 1.91510 1.60396 1.95392 1.64594 1.21265 0.91613 0.99860 1.01231 1.21232 1.01557 0.99112 0.92581 1.17903 0.86813 1.00089 0.89017 1.91490 1.60239 1.95218 1.65389 0.92360 0.90881 0.92948 0.91490 0.99024 0.94367 0.95107 0.96471 0.93588 0.90723 0.74720 0.83283 0.85661 0.81812 0.81276 0.81764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 9.29 71.98 0.67 -2.93 16 2 C -0.10 -3.64 3.09 -9.40 -0.03 -3.67 16 3 H 0.06 2.35 8.05 -2.38 -0.02 2.33 16 4 C 0.16 7.86 5.35 86.86 0.47 8.33 16 5 N -0.63 -32.26 3.39 -691.97 -2.35 -34.61 16 6 C -0.24 -13.42 10.27 84.03 0.86 -12.56 16 7 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 8 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 9 N -0.95 -56.70 10.09 21.65 0.22 -56.48 16 10 Si 0.98 45.87 29.55 68.60 2.03 47.90 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 13 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 14 C 0.14 5.39 6.76 86.73 0.59 5.97 16 15 C -0.09 -2.68 2.42 -9.60 -0.02 -2.70 16 16 H 0.10 2.65 8.01 -2.39 -0.02 2.63 16 17 C 0.15 3.95 5.02 86.38 0.43 4.38 16 18 N -0.72 -15.47 5.47 -463.05 -2.53 -18.00 16 19 C 0.51 11.96 7.82 87.66 0.69 12.65 16 20 O -0.58 -18.97 15.96 -3.01 -0.05 -19.02 16 21 C -0.10 -1.47 5.56 29.10 0.16 -1.31 16 22 C -0.08 -1.47 4.42 -19.83 -0.09 -1.56 16 23 C -0.12 -1.82 9.65 22.31 0.22 -1.60 16 24 C 0.08 1.24 7.30 22.37 0.16 1.40 16 25 F -0.14 -2.41 17.27 44.97 0.78 -1.64 16 26 C -0.12 -1.66 10.02 22.31 0.22 -1.44 16 27 C -0.13 -1.97 10.02 22.31 0.22 -1.75 16 28 C 0.08 1.65 7.14 22.37 0.16 1.81 16 29 F -0.14 -3.48 16.65 44.97 0.75 -2.73 16 30 H 0.06 1.58 8.11 -2.39 -0.02 1.56 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 3.79 5.87 -2.39 -0.01 3.78 16 34 H -0.01 -0.42 8.04 -2.39 -0.02 -0.44 16 35 H 0.25 14.33 8.31 -92.71 -0.77 13.55 16 36 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.02 0.70 7.69 -2.39 -0.02 0.68 16 38 H 0.05 1.49 7.94 -2.39 -0.02 1.47 16 39 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.42 6.68 8.47 -92.71 -0.79 5.90 16 41 H 0.15 1.04 8.00 -2.39 -0.02 1.02 16 42 H 0.13 1.53 7.93 -2.39 -0.02 1.51 16 43 H 0.16 1.78 8.04 -2.91 -0.02 1.76 16 44 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 45 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -74.78 380.32 4.24 -70.54 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.23 Total: 12.45 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 5.18 Total: 1.60 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -4.66 Total: -109.10 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.05 Total: -19.02 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 1.53 Total: -4.37 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -74.78 4.24 -70.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102288408.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.031 kcal (2) G-P(sol) polarization free energy of solvation -74.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds