Wall clock time and date at job start Tue Mar 31 2020 20:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.63850 * 2 1 4 4 C 1.54326 * 110.71697 * 236.67176 * 2 1 3 5 5 N 1.47031 * 107.26666 * 219.43810 * 4 2 1 6 6 C 1.36935 * 125.64370 * 178.97526 * 5 4 2 7 7 H 1.08005 * 119.99626 * 179.97438 * 6 5 4 8 8 C 1.38809 * 120.00275 * 359.97132 * 6 5 4 9 9 N 1.31624 * 120.00123 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00034 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47313 * 90.00148 * 10 8 6 12 12 H 1.48502 * 109.47159 * 210.00708 * 10 8 6 13 13 H 1.48499 * 109.47129 * 330.00230 * 10 8 6 14 14 C 1.47464 * 108.72199 * 358.97592 * 5 4 2 15 15 C 1.54906 * 104.81371 * 24.06864 * 14 5 4 16 16 H 1.09001 * 111.00751 * 81.13878 * 15 14 5 17 17 C 1.53004 * 111.00336 * 204.94804 * 15 14 5 18 18 N 1.46499 * 109.47198 * 290.41898 * 17 15 14 19 19 C 1.34777 * 119.99665 * 180.27868 * 18 17 15 20 20 O 1.21283 * 119.99990 * 359.71991 * 19 18 17 21 21 C 1.50698 * 119.99538 * 179.72653 * 19 18 17 22 22 C 1.50698 * 109.46944 * 179.97438 * 21 19 18 23 23 C 1.38258 * 120.00452 * 99.99964 * 22 21 19 24 24 C 1.38210 * 120.07631 * 180.02562 * 23 22 21 25 25 C 1.38254 * 120.06801 * 359.96663 * 24 23 22 26 26 C 1.38371 * 120.00225 * 0.02562 * 25 24 23 27 27 F 1.35101 * 120.03787 * 180.02562 * 26 25 24 28 28 C 1.38373 * 120.00238 * 279.72562 * 22 21 19 29 29 F 1.35104 * 120.03176 * 359.97399 * 28 22 21 30 30 H 1.09002 * 109.46825 * 296.85140 * 1 2 3 31 31 H 1.08997 * 109.47519 * 56.84950 * 1 2 3 32 32 H 1.08997 * 109.47034 * 176.85931 * 1 2 3 33 33 H 1.08997 * 109.88175 * 338.85669 * 4 2 1 34 34 H 1.08997 * 109.88308 * 100.02632 * 4 2 1 35 35 H 0.96993 * 119.99855 * 179.97438 * 9 8 6 36 36 H 1.09000 * 110.34979 * 265.25048 * 14 5 4 37 37 H 1.09004 * 110.40573 * 142.91547 * 14 5 4 38 38 H 1.09009 * 109.46730 * 170.41685 * 17 15 14 39 39 H 1.08998 * 109.46846 * 50.42230 * 17 15 14 40 40 H 0.97001 * 119.99790 * 359.97438 * 18 17 15 41 41 H 1.09003 * 109.47112 * 299.99065 * 21 19 18 42 42 H 1.08993 * 109.47916 * 59.99687 * 21 19 18 43 43 H 1.08002 * 119.96211 * 359.97438 * 23 22 21 44 44 H 1.08001 * 119.96848 * 179.97438 * 24 23 22 45 45 H 1.08003 * 120.00267 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0759 -0.7931 -1.2061 5 7 3.2445 -1.5518 -0.7366 6 6 4.0042 -2.3992 -1.4981 7 1 4.8468 -2.9120 -1.0579 8 6 3.6915 -2.5993 -2.8356 9 7 2.6650 -1.9741 -3.3721 10 14 4.7275 -3.7559 -3.8741 11 1 4.1672 -5.1287 -3.7946 12 1 4.7160 -3.2974 -5.2866 13 1 6.1231 -3.7608 -3.3668 14 6 3.4633 -1.2494 0.6900 15 6 2.0790 -0.7934 1.2150 16 1 1.4449 -1.6508 1.4406 17 6 2.2279 0.1120 2.4394 18 7 2.7061 -0.6786 3.5762 19 6 2.9065 -0.0881 4.7710 20 8 2.6957 1.0989 4.9036 21 6 3.3925 -0.9026 5.9420 22 6 3.5345 -0.0118 7.1491 23 6 2.5478 0.0027 8.1176 24 6 2.6762 0.8195 9.2250 25 6 3.7920 1.6234 9.3672 26 6 4.7814 1.6112 8.3999 27 9 5.8722 2.3961 8.5384 28 6 4.6550 0.7875 7.2913 29 9 5.6225 0.7695 6.3484 30 1 -0.3633 0.4642 0.9169 31 1 -0.3634 0.5619 -0.8603 32 1 -0.3633 -1.0261 -0.0563 33 1 1.3128 -1.4783 -1.5752 34 1 2.3740 -0.1056 -1.9976 35 1 2.4467 -2.1137 -4.3068 36 1 4.1935 -0.4477 0.7999 37 1 3.7953 -2.1415 1.2211 38 1 1.2618 0.5534 2.6844 39 1 2.9442 0.9040 2.2206 40 1 2.8744 -1.6280 3.4701 41 1 2.6748 -1.6944 6.1567 42 1 4.3594 -1.3443 5.7011 43 1 1.6753 -0.6244 8.0081 44 1 1.9042 0.8297 9.9803 45 1 3.8911 2.2616 10.2329 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102408849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:20 Heat of formation + Delta-G solvation = -85.631481 kcal Electronic energy + Delta-G solvation = -28707.042176 eV Core-core repulsion = 24360.757526 eV Total energy + Delta-G solvation = -4346.284650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.67258 -48.75148 -40.13217 -38.97198 -37.94987 -34.69424 -33.29533 -32.89532 -30.74380 -30.63119 -29.69130 -27.91933 -25.94589 -25.03753 -23.16467 -23.14010 -22.34179 -20.65429 -19.99916 -19.22866 -18.17461 -17.62131 -17.34856 -17.18302 -16.73113 -16.34557 -15.97616 -15.47842 -15.16532 -15.13382 -14.89083 -14.60573 -14.27648 -13.92948 -13.81853 -13.57401 -13.49832 -13.17119 -12.91584 -12.55781 -12.51734 -12.34529 -12.10802 -11.78970 -11.67572 -11.57756 -11.40540 -11.22008 -10.82669 -10.78329 -10.24844 -10.06988 -10.00826 -9.92263 -9.73499 -9.57966 -9.22159 -9.03055 -8.98960 -8.61320 -6.84147 -5.72196 -3.05783 0.60182 0.63172 2.57889 2.89385 3.31037 3.38820 3.44053 3.46041 3.48544 4.01210 4.11648 4.31413 4.48075 4.55820 4.69551 4.74120 4.94239 5.05591 5.10309 5.20250 5.30823 5.39887 5.46834 5.51936 5.55401 5.60391 5.72349 5.74519 5.85972 5.86912 6.00936 6.08639 6.17159 6.27056 6.40992 6.42322 6.47570 6.55432 6.61159 6.74566 6.93218 7.48554 7.55663 7.63447 7.82771 8.18069 8.25074 9.21143 9.81440 10.47549 11.39401 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019558 B = 0.002188 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.295388 B =12792.097567 C =13571.045802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.111 4.111 3 H 0.067 0.933 4 C 0.184 3.816 5 N -0.607 5.607 6 C -0.228 4.228 7 H 0.077 0.923 8 C -0.009 4.009 9 N -0.921 5.921 10 Si 0.912 3.088 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.282 1.282 14 C 0.142 3.858 15 C -0.113 4.113 16 H 0.080 0.920 17 C 0.133 3.867 18 N -0.722 5.722 19 C 0.513 3.487 20 O -0.537 6.537 21 C -0.107 4.107 22 C -0.070 4.070 23 C -0.091 4.091 24 C -0.101 4.101 25 C -0.128 4.128 26 C 0.067 3.933 27 F -0.130 7.130 28 C 0.086 3.914 29 F -0.124 7.124 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.041 0.959 35 H 0.252 0.748 36 H 0.019 0.981 37 H 0.035 0.965 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.403 0.597 41 H 0.114 0.886 42 H 0.110 0.890 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.985 3.016 25.764 26.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.131 4.131 3 H 0.086 0.914 4 C 0.059 3.941 5 N -0.333 5.333 6 C -0.357 4.357 7 H 0.095 0.905 8 C -0.205 4.205 9 N -0.569 5.569 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.015 3.985 15 C -0.132 4.132 16 H 0.099 0.901 17 C 0.009 3.991 18 N -0.374 5.374 19 C 0.299 3.701 20 O -0.414 6.414 21 C -0.146 4.146 22 C -0.072 4.072 23 C -0.109 4.109 24 C -0.119 4.119 25 C -0.147 4.147 26 C 0.046 3.954 27 F -0.108 7.108 28 C 0.065 3.935 29 F -0.102 7.102 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.237 0.763 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.158 0.842 44 H 0.159 0.841 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.037 3.837 25.558 26.022 hybrid contribution 1.048 -0.871 -0.913 1.640 sum -1.989 2.966 24.645 24.902 Atomic orbital electron populations 1.21692 0.95305 1.01601 1.00553 1.22444 0.95164 0.99127 0.96325 0.91440 1.21224 0.89081 0.93058 0.90728 1.44479 1.32597 1.51488 1.04721 1.19048 1.07586 1.17663 0.91372 0.90504 1.24807 0.98456 1.00336 0.96908 1.69962 1.28796 1.45484 1.12661 0.86122 0.79528 0.80325 0.79806 1.21626 1.21674 1.20721 1.21585 0.93029 0.97001 0.86857 1.22675 0.99410 0.98041 0.93112 0.90147 1.21409 0.99388 0.94035 0.84226 1.46037 1.67883 1.13326 1.10119 1.20289 0.77905 0.88175 0.83775 1.90731 1.51136 1.15501 1.84025 1.20653 1.05080 0.97913 0.90985 1.19269 0.93203 0.97870 0.96854 1.21005 0.97829 0.99099 0.92954 1.21029 0.97262 0.95392 0.98196 1.21089 0.93460 1.01266 0.98884 1.17658 0.86863 0.94508 0.96334 1.91533 1.51527 1.72033 1.95708 1.17492 0.88716 0.99665 0.87581 1.91544 1.60811 1.95200 1.62642 0.93694 0.92760 0.92710 0.93282 0.94045 0.93757 0.96331 0.94633 0.91635 0.91404 0.76299 0.86831 0.87151 0.84227 0.84136 0.83765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 9.16 37.16 0.34 -1.71 16 2 C -0.11 -1.99 3.02 -88.79 -0.27 -2.25 16 3 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 4 C 0.18 4.37 4.97 -3.06 -0.02 4.35 16 5 N -0.61 -15.23 3.40 -170.04 -0.58 -15.81 16 6 C -0.23 -6.31 10.28 -15.06 -0.15 -6.46 16 7 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 8 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 9 N -0.92 -26.92 10.31 55.49 0.57 -26.35 16 10 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.14 2.79 6.56 -2.51 -0.02 2.78 16 15 C -0.11 -1.81 2.51 -88.47 -0.22 -2.04 16 16 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 17 C 0.13 1.88 5.12 -4.04 -0.02 1.86 16 18 N -0.72 -8.61 5.45 -60.29 -0.33 -8.94 16 19 C 0.51 6.44 7.82 -10.99 -0.09 6.36 16 20 O -0.54 -8.95 15.96 5.55 0.09 -8.86 16 21 C -0.11 -0.92 5.56 -29.04 -0.16 -1.08 16 22 C -0.07 -0.69 4.42 -104.57 -0.46 -1.15 16 23 C -0.09 -0.66 9.67 -39.58 -0.38 -1.05 16 24 C -0.10 -0.64 10.04 -39.59 -0.40 -1.04 16 25 C -0.13 -0.99 10.02 -39.53 -0.40 -1.39 16 26 C 0.07 0.72 7.31 -39.37 -0.29 0.44 16 27 F -0.13 -1.56 17.18 2.25 0.04 -1.52 16 28 C 0.09 1.02 7.14 -39.36 -0.28 0.74 16 29 F -0.12 -1.71 16.57 2.25 0.04 -1.67 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.86 8.06 -51.93 -0.42 0.44 16 33 H 0.05 1.28 7.01 -51.93 -0.36 0.92 16 34 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 35 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.02 0.39 7.96 -51.93 -0.41 -0.03 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.92 8.14 -51.92 -0.42 0.49 16 39 H 0.07 1.07 8.03 -51.93 -0.42 0.65 16 40 H 0.40 3.91 8.43 -40.82 -0.34 3.57 16 41 H 0.11 0.59 8.00 -51.93 -0.42 0.17 16 42 H 0.11 0.84 7.93 -51.93 -0.41 0.43 16 43 H 0.14 0.66 8.04 -52.49 -0.42 0.24 16 44 H 0.14 0.47 8.06 -52.49 -0.42 0.04 16 45 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 LS Contribution 380.71 15.07 5.74 5.74 Total: -1.00 -34.14 380.71 -8.88 -43.01 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.51 Total: -0.59 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -2.91 Total: -1.99 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: -0.33 Total: -51.10 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.08 Total: -3.19 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.14 -8.88 -43.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102408849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.618 kcal (2) G-P(sol) polarization free energy of solvation -34.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds