Wall clock time and date at job start Tue Mar 31 2020 20:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.63850 * 2 1 4 4 C 1.54326 * 110.71697 * 236.67176 * 2 1 3 5 5 N 1.47031 * 107.26666 * 219.43810 * 4 2 1 6 6 C 1.36935 * 125.64370 * 178.97526 * 5 4 2 7 7 H 1.08005 * 119.99626 * 179.97438 * 6 5 4 8 8 C 1.38809 * 120.00275 * 359.97132 * 6 5 4 9 9 N 1.31624 * 120.00123 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00034 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47313 * 90.00148 * 10 8 6 12 12 H 1.48502 * 109.47159 * 210.00708 * 10 8 6 13 13 H 1.48499 * 109.47129 * 330.00230 * 10 8 6 14 14 C 1.47464 * 108.72199 * 358.97592 * 5 4 2 15 15 C 1.54906 * 104.81371 * 24.06864 * 14 5 4 16 16 H 1.09001 * 111.00751 * 81.13878 * 15 14 5 17 17 C 1.53004 * 111.00336 * 204.94804 * 15 14 5 18 18 N 1.46499 * 109.47198 * 290.41898 * 17 15 14 19 19 C 1.34777 * 119.99665 * 180.27868 * 18 17 15 20 20 O 1.21283 * 119.99990 * 359.71991 * 19 18 17 21 21 C 1.50698 * 119.99538 * 179.72653 * 19 18 17 22 22 C 1.50698 * 109.46944 * 179.97438 * 21 19 18 23 23 C 1.38258 * 120.00452 * 99.99964 * 22 21 19 24 24 C 1.38210 * 120.07631 * 180.02562 * 23 22 21 25 25 C 1.38254 * 120.06801 * 359.96663 * 24 23 22 26 26 C 1.38371 * 120.00225 * 0.02562 * 25 24 23 27 27 F 1.35101 * 120.03787 * 180.02562 * 26 25 24 28 28 C 1.38373 * 120.00238 * 279.72562 * 22 21 19 29 29 F 1.35104 * 120.03176 * 359.97399 * 28 22 21 30 30 H 1.09002 * 109.46825 * 296.85140 * 1 2 3 31 31 H 1.08997 * 109.47519 * 56.84950 * 1 2 3 32 32 H 1.08997 * 109.47034 * 176.85931 * 1 2 3 33 33 H 1.08997 * 109.88175 * 338.85669 * 4 2 1 34 34 H 1.08997 * 109.88308 * 100.02632 * 4 2 1 35 35 H 0.96993 * 119.99855 * 179.97438 * 9 8 6 36 36 H 1.09000 * 110.34979 * 265.25048 * 14 5 4 37 37 H 1.09004 * 110.40573 * 142.91547 * 14 5 4 38 38 H 1.09009 * 109.46730 * 170.41685 * 17 15 14 39 39 H 1.08998 * 109.46846 * 50.42230 * 17 15 14 40 40 H 0.97001 * 119.99790 * 359.97438 * 18 17 15 41 41 H 1.09003 * 109.47112 * 299.99065 * 21 19 18 42 42 H 1.08993 * 109.47916 * 59.99687 * 21 19 18 43 43 H 1.08002 * 119.96211 * 359.97438 * 23 22 21 44 44 H 1.08001 * 119.96848 * 179.97438 * 24 23 22 45 45 H 1.08003 * 120.00267 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0759 -0.7931 -1.2061 5 7 3.2445 -1.5518 -0.7366 6 6 4.0042 -2.3992 -1.4981 7 1 4.8468 -2.9120 -1.0579 8 6 3.6915 -2.5993 -2.8356 9 7 2.6650 -1.9741 -3.3721 10 14 4.7275 -3.7559 -3.8741 11 1 4.1672 -5.1287 -3.7946 12 1 4.7160 -3.2974 -5.2866 13 1 6.1231 -3.7608 -3.3668 14 6 3.4633 -1.2494 0.6900 15 6 2.0790 -0.7934 1.2150 16 1 1.4449 -1.6508 1.4406 17 6 2.2279 0.1120 2.4394 18 7 2.7061 -0.6786 3.5762 19 6 2.9065 -0.0881 4.7710 20 8 2.6957 1.0989 4.9036 21 6 3.3925 -0.9026 5.9420 22 6 3.5345 -0.0118 7.1491 23 6 2.5478 0.0027 8.1176 24 6 2.6762 0.8195 9.2250 25 6 3.7920 1.6234 9.3672 26 6 4.7814 1.6112 8.3999 27 9 5.8722 2.3961 8.5384 28 6 4.6550 0.7875 7.2913 29 9 5.6225 0.7695 6.3484 30 1 -0.3633 0.4642 0.9169 31 1 -0.3634 0.5619 -0.8603 32 1 -0.3633 -1.0261 -0.0563 33 1 1.3128 -1.4783 -1.5752 34 1 2.3740 -0.1056 -1.9976 35 1 2.4467 -2.1137 -4.3068 36 1 4.1935 -0.4477 0.7999 37 1 3.7953 -2.1415 1.2211 38 1 1.2618 0.5534 2.6844 39 1 2.9442 0.9040 2.2206 40 1 2.8744 -1.6280 3.4701 41 1 2.6748 -1.6944 6.1567 42 1 4.3594 -1.3443 5.7011 43 1 1.6753 -0.6244 8.0081 44 1 1.9042 0.8297 9.9803 45 1 3.8911 2.2616 10.2329 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102408849.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:19 Heat of formation + Delta-G solvation = -106.882568 kcal Electronic energy + Delta-G solvation = -28707.963692 eV Core-core repulsion = 24360.757526 eV Total energy + Delta-G solvation = -4347.206166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.51707 -49.61302 -41.05683 -39.90714 -39.30257 -36.03842 -34.67769 -33.91190 -32.54531 -31.26146 -30.99025 -28.86088 -27.74519 -26.48978 -24.55059 -23.81549 -23.30769 -21.77553 -21.54555 -20.66436 -18.98461 -18.85375 -18.34885 -18.12468 -17.92796 -17.25984 -17.17159 -16.62135 -16.43925 -16.03273 -15.82720 -15.72868 -15.60125 -15.43166 -14.85239 -14.73488 -14.44410 -14.40467 -14.18257 -13.97891 -13.44604 -13.36798 -13.11416 -13.06865 -12.99687 -12.84057 -12.70734 -12.62419 -12.40537 -12.21902 -11.94078 -11.84192 -11.57718 -11.42209 -11.36353 -10.94058 -10.70418 -10.06571 -9.89043 -9.71984 -8.89593 -7.84764 -5.20387 -0.03354 -0.01763 1.45345 1.47268 1.55769 1.64187 2.13201 2.49124 2.53218 2.82662 3.29577 3.33111 3.47060 3.61183 3.73472 3.78460 3.92248 3.94348 3.96229 4.03123 4.21339 4.34183 4.39183 4.50274 4.53453 4.60765 4.73616 4.79917 4.84918 4.86329 4.90477 4.97263 5.01638 5.09523 5.17376 5.18908 5.29766 5.35386 5.39963 5.47188 5.49946 5.71620 5.79938 5.81842 6.20389 6.56563 7.10633 7.25344 7.78290 8.42814 9.25461 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019558 B = 0.002188 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.295388 B =12792.097567 C =13571.045802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 H 0.070 0.930 4 C 0.192 3.808 5 N -0.630 5.630 6 C -0.241 4.241 7 H 0.083 0.917 8 C -0.068 4.068 9 N -0.951 5.951 10 Si 0.978 3.022 11 H -0.283 1.283 12 H -0.297 1.297 13 H -0.270 1.270 14 C 0.137 3.863 15 C -0.088 4.088 16 H 0.094 0.906 17 C 0.145 3.855 18 N -0.716 5.716 19 C 0.512 3.488 20 O -0.582 6.582 21 C -0.100 4.100 22 C -0.084 4.084 23 C -0.086 4.086 24 C -0.089 4.089 25 C -0.125 4.125 26 C 0.035 3.965 27 F -0.147 7.147 28 C 0.047 3.953 29 F -0.147 7.147 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.018 0.982 34 H -0.003 1.003 35 H 0.246 0.754 36 H 0.012 0.988 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.416 0.584 41 H 0.157 0.843 42 H 0.118 0.882 43 H 0.174 0.826 44 H 0.181 0.819 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.513 1.747 28.716 29.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.123 4.123 3 H 0.088 0.912 4 C 0.067 3.933 5 N -0.356 5.356 6 C -0.370 4.370 7 H 0.101 0.899 8 C -0.261 4.261 9 N -0.600 5.600 10 Si 0.806 3.194 11 H -0.210 1.210 12 H -0.223 1.223 13 H -0.195 1.195 14 C 0.012 3.988 15 C -0.108 4.108 16 H 0.113 0.887 17 C 0.021 3.979 18 N -0.368 5.368 19 C 0.299 3.701 20 O -0.462 6.462 21 C -0.139 4.139 22 C -0.086 4.086 23 C -0.104 4.104 24 C -0.107 4.107 25 C -0.143 4.143 26 C 0.015 3.985 27 F -0.125 7.125 28 C 0.027 3.973 29 F -0.126 7.126 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.037 0.963 34 H 0.015 0.985 35 H 0.055 0.945 36 H 0.029 0.971 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.252 0.748 41 H 0.175 0.825 42 H 0.136 0.864 43 H 0.191 0.809 44 H 0.198 0.802 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.547 2.539 28.550 29.021 hybrid contribution 1.523 -0.447 -1.765 2.374 sum -3.024 2.092 26.785 27.036 Atomic orbital electron populations 1.21633 0.92796 1.01783 1.02172 1.22322 0.97145 0.98390 0.94408 0.91204 1.20985 0.88149 0.91928 0.92260 1.44820 1.32655 1.51173 1.06938 1.19463 1.07883 1.17658 0.92022 0.89928 1.25665 0.99900 1.02308 0.98257 1.70193 1.30418 1.47018 1.12405 0.85082 0.78445 0.78308 0.77524 1.20958 1.22336 1.19528 1.21769 0.95145 0.97446 0.84481 1.22465 0.96910 0.98373 0.93028 0.88732 1.21110 0.99536 0.93184 0.84057 1.45931 1.67534 1.13821 1.09471 1.20955 0.76755 0.87879 0.84477 1.90715 1.53095 1.17610 1.84760 1.20730 1.06459 0.97977 0.88771 1.19546 0.93087 0.97922 0.98012 1.21500 0.97789 0.98939 0.92136 1.21553 0.97122 0.93552 0.98476 1.21480 0.92842 1.01421 0.98580 1.18110 0.87586 0.95229 0.97535 1.91476 1.52583 1.72608 1.95877 1.17998 0.89611 1.01681 0.87992 1.91466 1.61936 1.95571 1.63645 0.90503 0.92899 0.93050 0.96340 0.98493 0.94475 0.97060 0.93008 0.90548 0.93311 0.74767 0.82539 0.86442 0.80860 0.80169 0.81442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.16 71.98 0.66 -3.00 16 2 C -0.10 -3.64 3.02 -9.61 -0.03 -3.67 16 3 H 0.07 2.45 8.04 -2.38 -0.02 2.43 16 4 C 0.19 9.44 4.97 86.73 0.43 9.87 16 5 N -0.63 -32.16 3.40 -691.87 -2.35 -34.51 16 6 C -0.24 -13.51 10.28 84.03 0.86 -12.64 16 7 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 8 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 9 N -0.95 -57.64 10.31 21.65 0.22 -57.42 16 10 Si 0.98 45.91 29.55 68.60 2.03 47.93 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 14 C 0.14 5.31 6.56 86.85 0.57 5.88 16 15 C -0.09 -2.70 2.51 -9.40 -0.02 -2.72 16 16 H 0.09 2.69 8.05 -2.39 -0.02 2.67 16 17 C 0.15 3.83 5.12 86.38 0.44 4.27 16 18 N -0.72 -15.32 5.45 -463.05 -2.52 -17.84 16 19 C 0.51 11.83 7.82 87.66 0.69 12.51 16 20 O -0.58 -18.83 15.96 -3.04 -0.05 -18.88 16 21 C -0.10 -1.45 5.56 29.10 0.16 -1.29 16 22 C -0.08 -1.48 4.42 -19.83 -0.09 -1.57 16 23 C -0.09 -0.93 9.67 22.27 0.22 -0.71 16 24 C -0.09 -0.79 10.04 22.27 0.22 -0.56 16 25 C -0.12 -1.67 10.02 22.31 0.22 -1.45 16 26 C 0.04 0.77 7.31 22.41 0.16 0.94 16 27 F -0.15 -3.72 17.18 44.97 0.77 -2.95 16 28 C 0.05 1.13 7.14 22.41 0.16 1.29 16 29 F -0.15 -4.31 16.57 44.97 0.75 -3.56 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 1.53 8.06 -2.39 -0.02 1.51 16 33 H 0.02 1.01 7.01 -2.39 -0.02 0.99 16 34 H 0.00 -0.18 7.50 -2.39 -0.02 -0.20 16 35 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.01 0.47 7.96 -2.39 -0.02 0.45 16 37 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.05 1.50 8.03 -2.39 -0.02 1.48 16 40 H 0.42 6.78 8.43 -92.71 -0.78 6.00 16 41 H 0.16 0.86 8.00 -2.39 -0.02 0.84 16 42 H 0.12 1.56 7.93 -2.39 -0.02 1.54 16 43 H 0.17 0.66 8.04 -2.91 -0.02 0.63 16 44 H 0.18 0.16 8.06 -2.91 -0.02 0.14 16 45 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -79.78 380.71 4.20 -75.58 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.23 Total: 7.94 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 5.12 Total: 3.70 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -4.65 Total: -109.77 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.05 Total: -18.88 kcal Atomic # 9 Polarization: -8.03 SS G_CDS: 1.52 Total: -6.51 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal Total: -79.78 4.20 -75.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102408849.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.303 kcal (2) G-P(sol) polarization free energy of solvation -79.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds