Wall clock time and date at job start Tue Mar 31 2020 20:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.88992 * 2 1 4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3 5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1 6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2 7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4 8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47028 * 60.00888 * 10 8 6 12 12 H 1.48503 * 109.46851 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47412 * 300.00497 * 10 8 6 14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2 15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4 16 16 H 1.09000 * 110.51842 * 96.45537 * 15 14 5 17 17 C 1.53004 * 111.00070 * 219.59791 * 15 14 5 18 18 C 1.52996 * 109.47125 * 288.78390 * 17 15 14 19 19 N 1.46508 * 109.46707 * 179.97438 * 18 17 15 20 20 C 1.34776 * 119.99579 * 179.97438 * 19 18 17 21 21 O 1.21566 * 120.00332 * 0.02562 * 20 19 18 22 22 C 1.47726 * 119.99810 * 179.97438 * 20 19 18 23 23 C 1.39654 * 120.10769 * 359.72258 * 22 20 19 24 24 C 1.37861 * 119.92168 * 179.72080 * 23 22 20 25 25 C 1.38605 * 120.14717 * 0.58198 * 24 23 22 26 26 F 1.35104 * 119.88917 * 179.72164 * 25 24 23 27 27 C 1.38836 * 120.22210 * 359.69339 * 25 24 23 28 28 F 1.35094 * 119.96504 * 180.02562 * 27 25 24 29 29 C 1.38061 * 120.07281 * 359.97438 * 27 25 24 30 30 H 1.08996 * 109.47303 * 182.42955 * 1 2 3 31 31 H 1.09006 * 109.46537 * 302.42803 * 1 2 3 32 32 H 1.08996 * 109.47165 * 62.42956 * 1 2 3 33 33 H 1.08998 * 110.36455 * 86.04455 * 4 2 1 34 34 H 1.08995 * 110.37228 * 323.71591 * 4 2 1 35 35 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 36 36 H 1.09007 * 109.88188 * 118.12720 * 14 5 4 37 37 H 1.09002 * 109.88437 * 239.29313 * 14 5 4 38 38 H 1.09009 * 109.46621 * 48.78194 * 17 15 14 39 39 H 1.09003 * 109.47118 * 168.77881 * 17 15 14 40 40 H 1.09000 * 109.47127 * 299.99186 * 18 17 15 41 41 H 1.08993 * 109.47568 * 60.00281 * 18 17 15 42 42 H 0.96996 * 120.00130 * 359.97438 * 19 18 17 43 43 H 1.07992 * 120.04062 * 0.02562 * 23 22 20 44 44 H 1.08002 * 119.92439 * 180.29723 * 24 23 22 45 45 H 1.07994 * 120.07786 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7741 6 6 4.4642 -1.5651 -1.6083 7 1 5.4143 -1.8707 -1.1957 8 6 4.2957 -1.4944 -2.9844 9 7 3.1396 -1.1164 -3.4873 10 14 5.7102 -1.9344 -4.1224 11 1 6.1187 -3.3418 -3.8830 12 1 5.2768 -1.7776 -5.5341 13 1 6.8595 -1.0330 -3.8549 14 6 3.4667 -1.2785 0.6951 15 6 2.0870 -0.8078 1.2019 16 1 1.4481 -1.6634 1.4209 17 6 2.2317 0.0866 2.4349 18 6 2.6628 -0.7620 3.6327 19 7 2.8019 0.0947 4.8131 20 6 3.1751 -0.4393 5.9930 21 8 3.3967 -1.6316 6.0777 22 6 3.3159 0.4245 7.1831 23 6 3.0685 1.7956 7.0867 24 6 3.1955 2.5972 8.2011 25 6 3.5798 2.0474 9.4140 26 9 3.7081 2.8387 10.5015 27 6 3.8328 0.6860 9.5153 28 9 4.2065 0.1555 10.7002 29 6 3.7018 -0.1264 8.4067 30 1 -0.3634 -1.0267 0.0436 31 1 -0.3632 0.5511 0.8675 32 1 -0.3633 0.4756 -0.9109 33 1 2.1553 -0.1715 -2.0839 34 1 1.4522 -1.6703 -1.4026 35 1 3.0220 -1.0667 -4.4488 36 1 3.6616 -2.2956 1.0356 37 1 4.2431 -0.6073 1.0620 38 1 2.9836 0.8519 2.2422 39 1 1.2757 0.5631 2.6523 40 1 1.9108 -1.5272 3.8253 41 1 3.6187 -1.2383 3.4154 42 1 2.6254 1.0460 4.7454 43 1 2.7733 2.2266 6.1416 44 1 2.9995 3.6568 8.1278 45 1 3.8990 -1.1853 8.4854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103086538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:40 Heat of formation + Delta-G solvation = -84.203007 kcal Electronic energy + Delta-G solvation = -28035.602447 eV Core-core repulsion = 23689.379741 eV Total energy + Delta-G solvation = -4346.222707 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.99367 -49.05998 -40.57246 -38.65496 -38.07370 -35.46073 -33.35624 -31.87075 -31.59040 -30.76798 -30.44750 -27.02775 -25.73649 -24.74800 -23.78606 -23.62876 -22.07893 -21.05606 -19.79912 -19.31528 -18.82772 -18.03859 -17.64912 -16.87317 -16.84645 -16.62830 -15.97168 -15.78081 -15.45835 -15.09950 -15.01405 -14.64950 -14.47625 -14.36295 -13.86622 -13.62335 -13.53101 -13.21388 -13.01685 -12.85624 -12.57383 -12.11591 -12.05376 -11.91888 -11.69701 -11.51550 -11.15685 -11.06128 -10.87461 -10.74804 -10.38809 -10.12650 -9.91910 -9.84606 -9.74518 -9.72791 -9.43551 -9.34754 -9.20345 -8.63909 -6.81428 -5.64238 -3.05701 -0.04777 0.38014 2.19910 2.73942 3.12587 3.17327 3.40834 3.45044 3.46272 3.76593 3.92089 4.14348 4.25351 4.46106 4.49707 4.81675 5.03078 5.04638 5.16722 5.21522 5.22294 5.31712 5.43818 5.47160 5.51199 5.53456 5.62799 5.72809 5.87785 5.93363 6.04891 6.09117 6.18260 6.23590 6.25426 6.30966 6.53890 6.60310 6.67869 6.81500 7.00257 7.17560 7.55476 7.64269 7.86789 7.87516 8.37875 9.23708 9.84685 10.49938 11.39391 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020581 B = 0.001868 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.163803 B =14989.577893 C =15537.923112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.068 0.932 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.222 4.222 7 H 0.076 0.924 8 C -0.012 4.012 9 N -0.923 5.923 10 Si 0.914 3.086 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.285 1.285 14 C 0.139 3.861 15 C -0.093 4.093 16 H 0.073 0.927 17 C -0.117 4.117 18 C 0.117 3.883 19 N -0.719 5.719 20 C 0.556 3.444 21 O -0.528 6.528 22 C -0.112 4.112 23 C -0.067 4.067 24 C -0.131 4.131 25 C 0.090 3.910 26 F -0.124 7.124 27 C 0.063 3.937 28 F -0.124 7.124 29 C -0.068 4.068 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.011 0.989 35 H 0.252 0.748 36 H 0.019 0.981 37 H 0.022 0.978 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.399 0.601 43 H 0.146 0.854 44 H 0.155 0.845 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.426 9.584 23.426 25.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.086 0.914 4 C 0.033 3.967 5 N -0.331 5.331 6 C -0.350 4.350 7 H 0.094 0.906 8 C -0.208 4.208 9 N -0.572 5.572 10 Si 0.745 3.255 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.212 1.212 14 C 0.013 3.987 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.155 4.155 18 C -0.006 4.006 19 N -0.371 5.371 20 C 0.342 3.658 21 O -0.405 6.405 22 C -0.116 4.116 23 C -0.086 4.086 24 C -0.149 4.149 25 C 0.070 3.930 26 F -0.102 7.102 27 C 0.042 3.958 28 F -0.102 7.102 29 C -0.087 4.087 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.122 0.878 34 H 0.029 0.971 35 H 0.063 0.937 36 H 0.037 0.963 37 H 0.040 0.960 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.235 0.765 43 H 0.164 0.836 44 H 0.172 0.828 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.191 8.694 23.303 25.222 hybrid contribution 0.747 0.238 -0.140 0.797 sum -3.443 8.932 23.163 25.063 Atomic orbital electron populations 1.21635 0.95758 1.01151 1.00556 1.22629 0.94354 0.99343 0.97096 0.91383 1.21971 0.84074 0.95876 0.94741 1.44497 1.10519 1.78954 0.99160 1.19040 0.90969 1.37764 0.87230 0.90611 1.24784 0.97280 1.02083 0.96625 1.69789 1.22418 1.53884 1.11079 0.86158 0.81233 0.78224 0.79929 1.21224 1.21590 1.21201 1.21376 0.93662 0.97220 0.86417 1.22149 0.98221 0.97613 0.93230 0.90886 1.21801 1.01534 0.98538 0.93619 1.21598 1.02631 0.93303 0.83063 1.45982 1.69270 1.12422 1.09417 1.17967 0.77624 0.87419 0.82802 1.90832 1.49610 1.15173 1.84904 1.19907 1.03580 0.93893 0.94172 1.21288 0.96425 0.91983 0.98921 1.21050 1.01581 1.02026 0.90275 1.17954 1.03033 0.87074 0.84984 1.91565 1.93230 1.73112 1.52283 1.17513 1.04959 0.90269 0.83021 1.91568 1.88915 1.86296 1.43421 1.21203 0.96244 1.01699 0.89597 0.93070 0.93877 0.92793 0.87755 0.97074 0.93735 0.96261 0.96007 0.91101 0.91482 0.91082 0.90590 0.76531 0.83589 0.82771 0.82142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 9.30 37.16 0.35 -1.59 16 2 C -0.11 -2.00 3.09 -88.47 -0.27 -2.28 16 3 H 0.07 1.19 8.05 -51.93 -0.42 0.77 16 4 C 0.16 3.74 5.36 -2.53 -0.01 3.73 16 5 N -0.61 -15.37 3.39 -170.06 -0.58 -15.95 16 6 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16 7 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 8 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 9 N -0.92 -26.76 10.09 55.49 0.56 -26.20 16 10 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 14 C 0.14 2.81 6.25 -3.06 -0.02 2.79 16 15 C -0.09 -1.46 2.38 -88.77 -0.21 -1.67 16 16 H 0.07 1.14 8.02 -51.93 -0.42 0.73 16 17 C -0.12 -1.33 4.74 -26.73 -0.13 -1.46 16 18 C 0.12 1.32 5.56 -4.04 -0.02 1.30 16 19 N -0.72 -6.50 5.51 -61.29 -0.34 -6.84 16 20 C 0.56 6.01 7.77 -12.38 -0.10 5.91 16 21 O -0.53 -7.86 16.34 5.31 0.09 -7.77 16 22 C -0.11 -0.92 5.87 -104.97 -0.62 -1.53 16 23 C -0.07 -0.36 9.54 -39.19 -0.37 -0.73 16 24 C -0.13 -0.68 10.01 -39.58 -0.40 -1.08 16 25 C 0.09 0.68 7.31 -39.22 -0.29 0.40 16 26 F -0.12 -1.06 17.18 2.25 0.04 -1.02 16 27 C 0.06 0.54 7.30 -39.42 -0.29 0.25 16 28 F -0.12 -1.21 17.17 2.25 0.04 -1.17 16 29 C -0.07 -0.58 9.57 -39.12 -0.37 -0.96 16 30 H 0.05 0.75 8.11 -51.93 -0.42 0.32 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 2.80 5.87 -51.93 -0.31 2.50 16 34 H 0.01 0.29 8.04 -51.93 -0.42 -0.13 16 35 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 37 H 0.02 0.44 7.70 -51.93 -0.40 0.04 16 38 H 0.07 0.81 7.95 -51.92 -0.41 0.40 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.01 7.69 -51.93 -0.40 0.61 16 42 H 0.40 2.30 6.50 -40.82 -0.27 2.04 16 43 H 0.15 0.36 6.40 -52.49 -0.34 0.02 16 44 H 0.15 0.42 8.06 -52.49 -0.42 -0.01 16 45 H 0.16 1.41 7.65 -52.49 -0.40 1.01 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -32.78 377.23 -8.81 -41.59 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -6.27 Total: -1.68 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -3.00 Total: -3.70 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -0.35 Total: -48.98 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.09 Total: -7.77 kcal Atomic # 9 Polarization: -2.27 SS G_CDS: 0.08 Total: -2.20 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.78 -8.81 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103086538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.613 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds