Wall clock time and date at job start Tue Mar 31 2020 20:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.88992 * 2 1 4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3 5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1 6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2 7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4 8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47028 * 60.00888 * 10 8 6 12 12 H 1.48503 * 109.46851 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47412 * 300.00497 * 10 8 6 14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2 15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4 16 16 H 1.09000 * 110.51842 * 96.45537 * 15 14 5 17 17 C 1.53004 * 111.00070 * 219.59791 * 15 14 5 18 18 C 1.52996 * 109.47125 * 288.78390 * 17 15 14 19 19 N 1.46508 * 109.46707 * 179.97438 * 18 17 15 20 20 C 1.34776 * 119.99579 * 179.97438 * 19 18 17 21 21 O 1.21566 * 120.00332 * 0.02562 * 20 19 18 22 22 C 1.47726 * 119.99810 * 179.97438 * 20 19 18 23 23 C 1.39654 * 120.10769 * 359.72258 * 22 20 19 24 24 C 1.37861 * 119.92168 * 179.72080 * 23 22 20 25 25 C 1.38605 * 120.14717 * 0.58198 * 24 23 22 26 26 F 1.35104 * 119.88917 * 179.72164 * 25 24 23 27 27 C 1.38836 * 120.22210 * 359.69339 * 25 24 23 28 28 F 1.35094 * 119.96504 * 180.02562 * 27 25 24 29 29 C 1.38061 * 120.07281 * 359.97438 * 27 25 24 30 30 H 1.08996 * 109.47303 * 182.42955 * 1 2 3 31 31 H 1.09006 * 109.46537 * 302.42803 * 1 2 3 32 32 H 1.08996 * 109.47165 * 62.42956 * 1 2 3 33 33 H 1.08998 * 110.36455 * 86.04455 * 4 2 1 34 34 H 1.08995 * 110.37228 * 323.71591 * 4 2 1 35 35 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 36 36 H 1.09007 * 109.88188 * 118.12720 * 14 5 4 37 37 H 1.09002 * 109.88437 * 239.29313 * 14 5 4 38 38 H 1.09009 * 109.46621 * 48.78194 * 17 15 14 39 39 H 1.09003 * 109.47118 * 168.77881 * 17 15 14 40 40 H 1.09000 * 109.47127 * 299.99186 * 18 17 15 41 41 H 1.08993 * 109.47568 * 60.00281 * 18 17 15 42 42 H 0.96996 * 120.00130 * 359.97438 * 19 18 17 43 43 H 1.07992 * 120.04062 * 0.02562 * 23 22 20 44 44 H 1.08002 * 119.92439 * 180.29723 * 24 23 22 45 45 H 1.07994 * 120.07786 * 179.97438 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7741 6 6 4.4642 -1.5651 -1.6083 7 1 5.4143 -1.8707 -1.1957 8 6 4.2957 -1.4944 -2.9844 9 7 3.1396 -1.1164 -3.4873 10 14 5.7102 -1.9344 -4.1224 11 1 6.1187 -3.3418 -3.8830 12 1 5.2768 -1.7776 -5.5341 13 1 6.8595 -1.0330 -3.8549 14 6 3.4667 -1.2785 0.6951 15 6 2.0870 -0.8078 1.2019 16 1 1.4481 -1.6634 1.4209 17 6 2.2317 0.0866 2.4349 18 6 2.6628 -0.7620 3.6327 19 7 2.8019 0.0947 4.8131 20 6 3.1751 -0.4393 5.9930 21 8 3.3967 -1.6316 6.0777 22 6 3.3159 0.4245 7.1831 23 6 3.0685 1.7956 7.0867 24 6 3.1955 2.5972 8.2011 25 6 3.5798 2.0474 9.4140 26 9 3.7081 2.8387 10.5015 27 6 3.8328 0.6860 9.5153 28 9 4.2065 0.1555 10.7002 29 6 3.7018 -0.1264 8.4067 30 1 -0.3634 -1.0267 0.0436 31 1 -0.3632 0.5511 0.8675 32 1 -0.3633 0.4756 -0.9109 33 1 2.1553 -0.1715 -2.0839 34 1 1.4522 -1.6703 -1.4026 35 1 3.0220 -1.0667 -4.4488 36 1 3.6616 -2.2956 1.0356 37 1 4.2431 -0.6073 1.0620 38 1 2.9836 0.8519 2.2422 39 1 1.2757 0.5631 2.6523 40 1 1.9108 -1.5272 3.8253 41 1 3.6187 -1.2383 3.4154 42 1 2.6254 1.0460 4.7454 43 1 2.7733 2.2266 6.1416 44 1 2.9995 3.6568 8.1278 45 1 3.8990 -1.1853 8.4854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103086538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:39 Heat of formation + Delta-G solvation = -104.064141 kcal Electronic energy + Delta-G solvation = -28036.463691 eV Core-core repulsion = 23689.379741 eV Total energy + Delta-G solvation = -4347.083950 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.63283 -49.71131 -41.32888 -39.79775 -39.10980 -36.54421 -35.04120 -32.88176 -32.50874 -32.15770 -31.36708 -28.47110 -27.40969 -25.90950 -24.80974 -24.24178 -23.36569 -21.86941 -21.36929 -20.65707 -19.54134 -18.86540 -18.67429 -18.26198 -17.48261 -17.33278 -17.13298 -16.76093 -16.55290 -16.12298 -15.96950 -15.63287 -15.61154 -15.16681 -15.10067 -14.95064 -14.55561 -14.19655 -14.11928 -13.81125 -13.64693 -13.51859 -13.33586 -13.11617 -12.83295 -12.74054 -12.71527 -12.46630 -12.37498 -12.16000 -11.96340 -11.76237 -11.42010 -11.27816 -11.20221 -10.90509 -10.71522 -10.32000 -10.18644 -9.87993 -8.85333 -7.75876 -5.20146 -0.64395 -0.14434 1.45553 1.48603 1.52306 1.55008 1.96714 2.46875 2.50063 2.61593 3.18213 3.32266 3.41556 3.50224 3.73398 3.77031 3.80730 3.90991 3.96307 4.11100 4.27564 4.38652 4.52275 4.56474 4.60398 4.67568 4.75150 4.78008 4.83211 4.84589 4.88500 4.95514 5.05227 5.07812 5.16409 5.23186 5.31804 5.38955 5.44150 5.48898 5.52734 5.58993 5.80497 5.88536 6.34792 6.47042 7.12428 7.13477 7.82002 8.45492 9.24972 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020581 B = 0.001868 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.163803 B =14989.577893 C =15537.923112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 H 0.074 0.926 4 C 0.158 3.842 5 N -0.630 5.630 6 C -0.240 4.240 7 H 0.076 0.924 8 C -0.068 4.068 9 N -0.947 5.947 10 Si 0.978 3.022 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.276 1.276 14 C 0.132 3.868 15 C -0.079 4.079 16 H 0.076 0.924 17 C -0.101 4.101 18 C 0.123 3.877 19 N -0.702 5.702 20 C 0.555 3.445 21 O -0.579 6.579 22 C -0.122 4.122 23 C -0.046 4.046 24 C -0.114 4.114 25 C 0.085 3.915 26 F -0.131 7.131 27 C 0.044 3.956 28 F -0.138 7.138 29 C -0.077 4.077 30 H 0.046 0.954 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.068 0.932 34 H -0.020 1.020 35 H 0.247 0.753 36 H 0.009 0.991 37 H 0.028 0.972 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.419 0.581 43 H 0.185 0.815 44 H 0.190 0.810 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.263 12.315 24.476 27.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.119 4.119 3 H 0.093 0.907 4 C 0.033 3.967 5 N -0.356 5.356 6 C -0.369 4.369 7 H 0.094 0.906 8 C -0.261 4.261 9 N -0.597 5.597 10 Si 0.807 3.193 11 H -0.208 1.208 12 H -0.218 1.218 13 H -0.202 1.202 14 C 0.007 3.993 15 C -0.098 4.098 16 H 0.094 0.906 17 C -0.139 4.139 18 C -0.001 4.001 19 N -0.355 5.355 20 C 0.343 3.657 21 O -0.459 6.459 22 C -0.125 4.125 23 C -0.065 4.065 24 C -0.133 4.133 25 C 0.064 3.936 26 F -0.109 7.109 27 C 0.024 3.976 28 F -0.116 7.116 29 C -0.097 4.097 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.086 0.914 34 H -0.002 1.002 35 H 0.056 0.944 36 H 0.027 0.973 37 H 0.046 0.954 38 H 0.097 0.903 39 H 0.121 0.879 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.258 0.742 43 H 0.202 0.798 44 H 0.208 0.792 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.035 11.469 24.381 27.410 hybrid contribution 1.026 -0.625 -0.459 1.286 sum -4.009 10.844 23.922 26.569 Atomic orbital electron populations 1.21601 0.93009 1.01596 1.02263 1.22463 0.96463 0.98506 0.94470 0.90731 1.21802 0.83538 0.94806 0.96561 1.44860 1.10508 1.78941 1.01298 1.19405 0.91877 1.37502 0.88165 0.90614 1.25621 0.99766 1.02597 0.98086 1.70061 1.24070 1.54824 1.10772 0.85152 0.78546 0.78063 0.77582 1.20776 1.21789 1.20162 1.21602 0.96884 0.96964 0.83813 1.22056 0.95045 0.98289 0.94442 0.90595 1.21654 1.03754 0.97472 0.90973 1.21360 1.01238 0.93581 0.83933 1.45735 1.68361 1.13217 1.08140 1.18332 0.76647 0.87023 0.83689 1.90814 1.51919 1.17503 1.85702 1.19741 1.05130 0.94984 0.92658 1.21658 0.94075 0.90250 1.00479 1.21431 0.99498 1.03609 0.88728 1.18222 1.03145 0.86485 0.85729 1.91549 1.93326 1.73112 1.52933 1.17649 1.06321 0.91031 0.82589 1.91524 1.89283 1.86645 1.44185 1.21123 0.97018 1.01296 0.90251 0.93530 0.89778 0.93238 0.91394 1.00205 0.94377 0.97322 0.95390 0.90331 0.87876 0.91589 0.93071 0.74157 0.79753 0.79230 0.83520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 9.30 71.98 0.67 -2.65 16 2 C -0.10 -3.31 3.09 -9.40 -0.03 -3.34 16 3 H 0.07 2.41 8.05 -2.39 -0.02 2.39 16 4 C 0.16 7.66 5.36 86.86 0.47 8.13 16 5 N -0.63 -32.70 3.39 -691.95 -2.35 -35.05 16 6 C -0.24 -13.72 10.27 84.04 0.86 -12.85 16 7 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 8 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 9 N -0.95 -56.78 10.09 21.65 0.22 -56.56 16 10 Si 0.98 46.13 29.55 68.60 2.03 48.16 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 13 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 14 C 0.13 5.33 6.25 86.73 0.54 5.87 16 15 C -0.08 -2.33 2.38 -9.60 -0.02 -2.35 16 16 H 0.08 2.23 8.02 -2.39 -0.02 2.21 16 17 C -0.10 -1.89 4.74 30.59 0.14 -1.75 16 18 C 0.12 2.48 5.56 86.38 0.48 2.96 16 19 N -0.70 -10.40 5.51 -466.09 -2.57 -12.96 16 20 C 0.56 11.16 7.77 86.75 0.67 11.83 16 21 O -0.58 -17.41 16.34 -3.92 -0.06 -17.47 16 22 C -0.12 -1.75 5.87 -20.09 -0.12 -1.87 16 23 C -0.05 -0.29 9.54 22.52 0.21 -0.07 16 24 C -0.11 -0.71 10.01 22.27 0.22 -0.49 16 25 C 0.08 1.12 7.31 22.50 0.16 1.28 16 26 F -0.13 -2.03 17.18 44.97 0.77 -1.26 16 27 C 0.04 0.75 7.30 22.37 0.16 0.91 16 28 F -0.14 -2.81 17.17 44.97 0.77 -2.03 16 29 C -0.08 -1.33 9.57 22.57 0.22 -1.11 16 30 H 0.05 1.26 8.11 -2.39 -0.02 1.24 16 31 H 0.08 1.55 8.14 -2.38 -0.02 1.54 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 3.80 5.87 -2.39 -0.01 3.78 16 34 H -0.02 -1.07 8.04 -2.39 -0.02 -1.09 16 35 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 36 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 37 H 0.03 1.09 7.70 -2.39 -0.02 1.08 16 38 H 0.08 1.44 7.95 -2.38 -0.02 1.42 16 39 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.05 1.31 7.69 -2.39 -0.02 1.30 16 42 H 0.42 2.65 6.50 -92.71 -0.60 2.05 16 43 H 0.19 -0.31 6.40 -2.91 -0.02 -0.33 16 44 H 0.19 -0.09 8.06 -2.91 -0.02 -0.12 16 45 H 0.15 2.83 7.65 -2.91 -0.02 2.81 16 Total: -1.00 -77.12 377.23 4.34 -72.77 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: 0.42 Total: 3.37 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 5.12 Total: 1.05 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -4.70 Total: -104.57 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.06 Total: -17.47 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 1.54 Total: -3.30 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -77.12 4.34 -72.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103086538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.290 kcal (2) G-P(sol) polarization free energy of solvation -77.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds