Wall clock time and date at job start Tue Mar 31 2020 20:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.88992 * 2 1 4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3 5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1 6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2 7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4 8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47361 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46860 * 120.00310 * 10 8 6 13 13 H 1.48500 * 109.47264 * 240.00123 * 10 8 6 14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2 15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4 16 16 H 1.09000 * 110.67030 * 96.52509 * 15 14 5 17 17 C 1.53002 * 110.84636 * 219.66998 * 15 14 5 18 18 C 1.52998 * 109.47515 * 288.69230 * 17 15 14 19 19 N 1.46499 * 109.47243 * 180.02562 * 18 17 15 20 20 C 1.34777 * 119.99790 * 180.02562 * 19 18 17 21 21 O 1.21570 * 120.00198 * 359.97438 * 20 19 18 22 22 C 1.47701 * 119.99477 * 179.97438 * 20 19 18 23 23 C 1.39648 * 120.15781 * 359.97438 * 22 20 19 24 24 C 1.38073 * 119.84971 * 179.97438 * 23 22 20 25 25 F 1.35103 * 119.91419 * 179.97438 * 24 23 22 26 26 C 1.38649 * 120.16774 * 0.02662 * 24 23 22 27 27 C 1.38190 * 120.31310 * 359.97438 * 26 24 23 28 28 C 1.38310 * 120.14709 * 359.74519 * 27 26 24 29 29 F 1.35096 * 120.08699 * 180.27913 * 28 27 26 30 30 H 1.08996 * 109.47303 * 182.42955 * 1 2 3 31 31 H 1.09006 * 109.46537 * 302.42803 * 1 2 3 32 32 H 1.08996 * 109.47165 * 62.42956 * 1 2 3 33 33 H 1.08998 * 110.36455 * 86.04455 * 4 2 1 34 34 H 1.08995 * 110.37228 * 323.71591 * 4 2 1 35 35 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 36 36 H 1.09007 * 109.88188 * 118.12720 * 14 5 4 37 37 H 1.09002 * 109.88437 * 239.29313 * 14 5 4 38 38 H 1.09004 * 109.46957 * 48.69868 * 17 15 14 39 39 H 1.09005 * 109.47022 * 168.68986 * 17 15 14 40 40 H 1.09005 * 109.47010 * 300.00334 * 18 17 15 41 41 H 1.08992 * 109.47010 * 59.99637 * 18 17 15 42 42 H 0.97000 * 120.00023 * 359.97438 * 19 18 17 43 43 H 1.07997 * 120.07571 * 359.97438 * 23 22 20 44 44 H 1.08001 * 119.84717 * 180.02562 * 26 24 23 45 45 H 1.08006 * 119.92548 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7741 6 6 4.4642 -1.5651 -1.6083 7 1 5.4143 -1.8707 -1.1957 8 6 4.2957 -1.4944 -2.9844 9 7 3.1396 -1.1164 -3.4873 10 14 5.7102 -1.9344 -4.1224 11 1 6.8932 -2.3243 -3.3139 12 1 5.3104 -3.0691 -4.9931 13 1 6.0512 -0.7601 -4.9651 14 6 3.4667 -1.2785 0.6951 15 6 2.0870 -0.8078 1.2019 16 1 1.4464 -1.6616 1.4228 17 6 2.2359 0.0876 2.4336 18 6 2.6668 -0.7606 3.6318 19 7 2.8088 0.0967 4.8112 20 6 3.1833 -0.4367 5.9909 21 8 3.4029 -1.6293 6.0764 22 6 3.3269 0.4278 7.1798 23 6 3.0760 1.7983 7.0852 24 6 3.2117 2.6005 8.2007 25 9 2.9698 3.9266 8.1105 26 6 3.5967 2.0487 9.4130 27 6 3.8467 0.6934 9.5144 28 6 3.7092 -0.1231 8.4066 29 9 3.9485 -1.4488 8.5084 30 1 -0.3634 -1.0267 0.0436 31 1 -0.3632 0.5511 0.8675 32 1 -0.3633 0.4756 -0.9109 33 1 2.1553 -0.1715 -2.0839 34 1 1.4522 -1.6703 -1.4026 35 1 3.0220 -1.0667 -4.4488 36 1 3.6616 -2.2956 1.0356 37 1 4.2431 -0.6073 1.0620 38 1 2.9893 0.8509 2.2389 39 1 1.2814 0.5666 2.6520 40 1 1.9134 -1.5239 3.8264 41 1 3.6212 -1.2396 3.4133 42 1 2.6339 1.0484 4.7429 43 1 2.7765 2.2298 6.1415 44 1 3.7008 2.6809 10.2825 45 1 4.1459 0.2701 10.4620 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103087697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:43 Heat of formation + Delta-G solvation = -103.307412 kcal Electronic energy + Delta-G solvation = -28381.167785 eV Core-core repulsion = 24034.116650 eV Total energy + Delta-G solvation = -4347.051136 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.01263 -49.98041 -41.21491 -39.81434 -39.18453 -36.57347 -35.07674 -33.28355 -32.53964 -31.91784 -31.09750 -28.54143 -27.45522 -26.01002 -25.12226 -23.94180 -23.24891 -21.95972 -21.40143 -20.69534 -19.44994 -18.88363 -18.54151 -18.30909 -17.34747 -17.16833 -17.02543 -16.66984 -16.52102 -16.37166 -15.94608 -15.73302 -15.52565 -15.38251 -14.97482 -14.69075 -14.58003 -14.24775 -14.12210 -13.72217 -13.64207 -13.53009 -13.37360 -12.98989 -12.88917 -12.78285 -12.74031 -12.58194 -12.39394 -12.20135 -11.93762 -11.79126 -11.44584 -11.29165 -11.22556 -10.92937 -10.74839 -10.51991 -10.17458 -9.71707 -8.87720 -7.78043 -5.22458 -0.58779 -0.15635 1.44361 1.45356 1.55844 1.56992 1.93164 2.40117 2.48229 2.96733 3.01598 3.30429 3.39170 3.52333 3.70130 3.73501 3.85010 3.90834 3.99233 4.07460 4.24677 4.32979 4.39236 4.51991 4.63153 4.67343 4.72505 4.79522 4.81772 4.83589 4.85411 4.93487 5.01457 5.02440 5.12201 5.18189 5.27241 5.33323 5.41306 5.45992 5.55118 5.58780 5.77308 5.85877 6.32426 6.37274 7.04503 7.11453 7.79337 8.43104 9.23376 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016892 B = 0.002089 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.172319 B =13401.975490 C =13887.583897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.100 4.100 3 H 0.073 0.927 4 C 0.158 3.842 5 N -0.630 5.630 6 C -0.239 4.239 7 H 0.076 0.924 8 C -0.068 4.068 9 N -0.948 5.948 10 Si 0.979 3.021 11 H -0.269 1.269 12 H -0.292 1.292 13 H -0.288 1.288 14 C 0.133 3.867 15 C -0.079 4.079 16 H 0.077 0.923 17 C -0.101 4.101 18 C 0.124 3.876 19 N -0.705 5.705 20 C 0.550 3.450 21 O -0.570 6.570 22 C -0.159 4.159 23 C -0.086 4.086 24 C 0.080 3.920 25 F -0.132 7.132 26 C -0.082 4.082 27 C -0.123 4.123 28 C 0.123 3.877 29 F -0.133 7.133 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.069 0.931 34 H -0.019 1.019 35 H 0.247 0.753 36 H 0.009 0.991 37 H 0.027 0.973 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.416 0.584 43 H 0.171 0.829 44 H 0.185 0.815 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.169 11.978 28.561 31.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.119 4.119 3 H 0.092 0.908 4 C 0.033 3.967 5 N -0.356 5.356 6 C -0.368 4.368 7 H 0.094 0.906 8 C -0.261 4.261 9 N -0.598 5.598 10 Si 0.807 3.193 11 H -0.194 1.194 12 H -0.219 1.219 13 H -0.215 1.215 14 C 0.008 3.992 15 C -0.098 4.098 16 H 0.095 0.905 17 C -0.139 4.139 18 C 0.000 4.000 19 N -0.357 5.357 20 C 0.338 3.662 21 O -0.450 6.450 22 C -0.164 4.164 23 C -0.106 4.106 24 C 0.060 3.940 25 F -0.111 7.111 26 C -0.100 4.100 27 C -0.142 4.142 28 C 0.102 3.898 29 F -0.111 7.111 30 H 0.066 0.934 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.087 0.913 34 H -0.001 1.001 35 H 0.057 0.943 36 H 0.027 0.973 37 H 0.045 0.955 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.255 0.745 43 H 0.188 0.812 44 H 0.202 0.798 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -3.955 11.108 28.381 30.733 hybrid contribution 0.770 -0.486 -1.331 1.613 sum -3.185 10.622 27.050 29.235 Atomic orbital electron populations 1.21598 0.92953 1.01645 1.02251 1.22467 0.96523 0.98466 0.94474 0.90846 1.21800 0.83535 0.94838 0.96478 1.44873 1.10561 1.78930 1.01227 1.19478 0.91817 1.37357 0.88169 0.90630 1.25630 0.99816 1.02567 0.98060 1.70074 1.24055 1.54912 1.10728 0.84996 0.78593 0.77038 0.78627 1.19374 1.21929 1.21461 1.21590 0.96762 0.96959 0.83912 1.22053 0.95161 0.98269 0.94325 0.90464 1.21654 1.03590 0.97492 0.91120 1.21362 1.01226 0.93528 0.83878 1.45766 1.68556 1.13050 1.08339 1.18313 0.77045 0.87106 0.83760 1.90853 1.51536 1.17086 1.85557 1.19768 1.08848 0.94556 0.93194 1.21321 0.98281 0.90638 1.00317 1.17589 1.03248 0.78160 0.94980 1.91566 1.92018 1.30627 1.96877 1.21585 0.95713 0.94968 0.97783 1.21311 1.01391 0.92853 0.98609 1.18187 0.98992 0.78295 0.94295 1.91571 1.91192 1.31746 1.96589 0.93422 0.89956 0.93099 0.91303 1.00056 0.94343 0.97258 0.95534 0.90515 0.88054 0.91573 0.93051 0.74501 0.81199 0.79757 0.80220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 9.30 71.98 0.67 -2.84 16 2 C -0.10 -3.48 3.09 -9.40 -0.03 -3.51 16 3 H 0.07 2.51 8.05 -2.39 -0.02 2.49 16 4 C 0.16 7.88 5.36 86.86 0.47 8.34 16 5 N -0.63 -33.50 3.39 -691.95 -2.35 -35.84 16 6 C -0.24 -13.89 10.27 84.04 0.86 -13.03 16 7 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 8 C -0.07 -3.98 5.49 84.86 0.47 -3.51 16 9 N -0.95 -57.54 10.09 21.65 0.22 -57.32 16 10 Si 0.98 46.81 29.55 68.60 2.03 48.84 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 12 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 13 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 14 C 0.13 5.58 6.24 86.73 0.54 6.12 16 15 C -0.08 -2.48 2.39 -9.60 -0.02 -2.50 16 16 H 0.08 2.40 8.01 -2.39 -0.02 2.38 16 17 C -0.10 -2.19 4.73 30.59 0.14 -2.04 16 18 C 0.12 2.91 5.56 86.38 0.48 3.39 16 19 N -0.70 -13.53 5.51 -466.12 -2.57 -16.10 16 20 C 0.55 13.56 7.77 86.74 0.67 14.23 16 21 O -0.57 -19.68 15.34 -3.94 -0.06 -19.74 16 22 C -0.16 -2.89 5.88 -20.06 -0.12 -3.01 16 23 C -0.09 -0.99 9.51 22.57 0.21 -0.77 16 24 C 0.08 0.79 7.29 22.33 0.16 0.95 16 25 F -0.13 -1.48 17.26 44.97 0.78 -0.71 16 26 C -0.08 -0.53 10.01 22.36 0.22 -0.31 16 27 C -0.12 -1.16 10.01 22.28 0.22 -0.94 16 28 C 0.12 2.24 7.28 22.67 0.17 2.40 16 29 F -0.13 -3.34 15.55 44.97 0.70 -2.65 16 30 H 0.05 1.35 8.11 -2.39 -0.02 1.33 16 31 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 3.92 5.87 -2.39 -0.01 3.91 16 34 H -0.02 -1.01 8.04 -2.39 -0.02 -1.03 16 35 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 37 H 0.03 1.09 7.69 -2.39 -0.02 1.07 16 38 H 0.08 1.64 7.94 -2.38 -0.02 1.63 16 39 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.05 1.48 7.68 -2.39 -0.02 1.46 16 42 H 0.42 4.82 6.51 -92.71 -0.60 4.22 16 43 H 0.17 1.08 6.40 -2.91 -0.02 1.06 16 44 H 0.19 -0.01 8.06 -2.91 -0.02 -0.03 16 45 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 Total: -1.00 -78.66 375.47 4.28 -74.38 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 0.42 Total: 6.15 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 5.12 Total: 2.98 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -4.70 Total: -109.26 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.06 Total: -19.74 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 1.48 Total: -3.35 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -78.66 4.28 -74.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103087697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.931 kcal (2) G-P(sol) polarization free energy of solvation -78.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds