Wall clock time and date at job start Tue Mar 31 2020 20:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.88992 * 2 1 4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3 5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1 6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2 7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4 8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47361 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46860 * 120.00310 * 10 8 6 13 13 H 1.48500 * 109.47264 * 240.00123 * 10 8 6 14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2 15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4 16 16 H 1.09000 * 110.67030 * 96.52509 * 15 14 5 17 17 C 1.53002 * 110.84636 * 219.66998 * 15 14 5 18 18 C 1.52998 * 109.47515 * 288.69230 * 17 15 14 19 19 N 1.46499 * 109.47243 * 180.02562 * 18 17 15 20 20 C 1.34777 * 119.99790 * 180.02562 * 19 18 17 21 21 O 1.21570 * 120.00198 * 359.97438 * 20 19 18 22 22 C 1.47701 * 119.99477 * 179.97438 * 20 19 18 23 23 C 1.39679 * 120.15947 * 359.71922 * 22 20 19 24 24 C 1.37846 * 119.92583 * 179.77059 * 23 22 20 25 25 C 1.38447 * 120.23817 * 0.51100 * 24 23 22 26 26 C 1.38387 * 120.31894 * 359.74182 * 25 24 23 27 27 F 1.35095 * 119.96596 * 180.02562 * 26 25 24 28 28 C 1.38543 * 120.06374 * 0.02562 * 26 25 24 29 29 F 1.35107 * 120.11784 * 179.97438 * 28 26 25 30 30 H 1.08996 * 109.47303 * 182.42955 * 1 2 3 31 31 H 1.09006 * 109.46537 * 302.42803 * 1 2 3 32 32 H 1.08996 * 109.47165 * 62.42956 * 1 2 3 33 33 H 1.08998 * 110.36455 * 86.04455 * 4 2 1 34 34 H 1.08995 * 110.37228 * 323.71591 * 4 2 1 35 35 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 36 36 H 1.09007 * 109.88188 * 118.12720 * 14 5 4 37 37 H 1.09002 * 109.88437 * 239.29313 * 14 5 4 38 38 H 1.09004 * 109.46957 * 48.69868 * 17 15 14 39 39 H 1.09005 * 109.47022 * 168.68986 * 17 15 14 40 40 H 1.09005 * 109.47010 * 300.00334 * 18 17 15 41 41 H 1.08992 * 109.47010 * 59.99637 * 18 17 15 42 42 H 0.97000 * 120.00023 * 359.97438 * 19 18 17 43 43 H 1.08004 * 120.03592 * 0.02562 * 23 22 20 44 44 H 1.07999 * 119.88211 * 180.24889 * 24 23 22 45 45 H 1.08001 * 119.84273 * 179.72405 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7741 6 6 4.4642 -1.5651 -1.6083 7 1 5.4143 -1.8707 -1.1957 8 6 4.2957 -1.4944 -2.9844 9 7 3.1396 -1.1164 -3.4873 10 14 5.7102 -1.9344 -4.1224 11 1 6.8932 -2.3243 -3.3139 12 1 5.3104 -3.0691 -4.9931 13 1 6.0512 -0.7601 -4.9651 14 6 3.4667 -1.2785 0.6951 15 6 2.0870 -0.8078 1.2019 16 1 1.4464 -1.6616 1.4228 17 6 2.2359 0.0876 2.4336 18 6 2.6668 -0.7606 3.6318 19 7 2.8088 0.0967 4.8112 20 6 3.1833 -0.4367 5.9909 21 8 3.4029 -1.6293 6.0764 22 6 3.3269 0.4278 7.1798 23 6 3.0811 1.7995 7.0839 24 6 3.2120 2.6011 8.1977 25 6 3.5968 2.0534 9.4096 26 6 3.8479 0.6965 9.5147 27 9 4.2224 0.1695 10.7009 28 6 3.7156 -0.1218 8.4047 29 9 3.9611 -1.4466 8.5060 30 1 -0.3634 -1.0267 0.0436 31 1 -0.3632 0.5511 0.8675 32 1 -0.3633 0.4756 -0.9109 33 1 2.1553 -0.1715 -2.0839 34 1 1.4522 -1.6703 -1.4026 35 1 3.0220 -1.0667 -4.4488 36 1 3.6616 -2.2956 1.0356 37 1 4.2431 -0.6073 1.0620 38 1 2.9893 0.8509 2.2389 39 1 1.2814 0.5666 2.6520 40 1 1.9134 -1.5239 3.8264 41 1 3.6212 -1.2396 3.4133 42 1 2.6339 1.0484 4.7429 43 1 2.7848 2.2308 6.1392 44 1 3.0179 3.6609 8.1237 45 1 3.7017 2.6881 10.2771 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103378628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:48 Heat of formation + Delta-G solvation = -81.314731 kcal Electronic energy + Delta-G solvation = -28383.444974 eV Core-core repulsion = 24037.347513 eV Total energy + Delta-G solvation = -4346.097462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.84365 -48.88955 -40.40454 -38.71968 -38.09285 -35.39395 -33.35132 -32.15046 -31.03883 -30.78118 -30.55450 -27.04229 -25.74395 -24.89516 -23.91009 -23.18846 -22.04985 -21.09462 -19.78588 -19.30014 -18.77812 -17.76240 -17.62492 -16.83199 -16.78387 -16.64980 -15.81684 -15.72562 -15.38563 -15.29676 -15.00080 -14.71257 -14.39671 -14.15369 -13.79611 -13.57724 -13.48182 -13.01713 -12.85644 -12.61234 -12.58532 -12.22851 -12.08916 -12.03348 -11.68052 -11.51234 -11.13954 -11.04936 -10.85162 -10.76224 -10.28662 -10.07668 -9.89518 -9.82762 -9.72095 -9.71549 -9.33447 -9.30738 -9.20652 -8.63688 -6.80265 -5.63643 -3.04914 0.01241 0.36005 2.30335 2.71328 3.11191 3.28532 3.40450 3.46311 3.48658 3.84721 3.99417 4.07576 4.24448 4.47845 4.50503 4.84136 5.02968 5.06303 5.11518 5.25206 5.31189 5.33540 5.45444 5.51496 5.52580 5.54586 5.64708 5.74626 5.89918 5.95232 6.08941 6.10972 6.20045 6.25047 6.27592 6.32787 6.55096 6.61579 6.69576 6.82922 7.01743 7.20116 7.56745 7.66080 7.88338 7.91314 8.38617 9.24622 9.85538 10.50785 11.40171 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019781 B = 0.002011 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.142038 B =13919.481385 C =14552.708072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 H 0.068 0.932 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.220 4.220 7 H 0.077 0.923 8 C -0.013 4.013 9 N -0.923 5.923 10 Si 0.913 3.087 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.139 3.861 15 C -0.093 4.093 16 H 0.073 0.927 17 C -0.116 4.116 18 C 0.117 3.883 19 N -0.719 5.719 20 C 0.553 3.447 21 O -0.518 6.518 22 C -0.143 4.143 23 C -0.068 4.068 24 C -0.108 4.108 25 C -0.102 4.102 26 C 0.058 3.942 27 F -0.124 7.124 28 C 0.127 3.873 29 F -0.102 7.102 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.105 0.895 34 H 0.011 0.989 35 H 0.251 0.749 36 H 0.020 0.980 37 H 0.022 0.978 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.399 0.601 43 H 0.145 0.855 44 H 0.149 0.851 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.463 11.738 24.591 27.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.086 0.914 4 C 0.033 3.967 5 N -0.332 5.332 6 C -0.348 4.348 7 H 0.095 0.905 8 C -0.209 4.209 9 N -0.572 5.572 10 Si 0.744 3.256 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.013 3.987 15 C -0.112 4.112 16 H 0.091 0.909 17 C -0.154 4.154 18 C -0.005 4.005 19 N -0.371 5.371 20 C 0.338 3.662 21 O -0.394 6.394 22 C -0.147 4.147 23 C -0.087 4.087 24 C -0.126 4.126 25 C -0.121 4.121 26 C 0.037 3.963 27 F -0.103 7.103 28 C 0.105 3.895 29 F -0.080 7.080 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.029 0.971 35 H 0.061 0.939 36 H 0.038 0.962 37 H 0.040 0.960 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.234 0.766 43 H 0.163 0.837 44 H 0.166 0.834 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.210 10.738 24.445 27.029 hybrid contribution 0.756 -0.182 -0.339 0.848 sum -3.454 10.557 24.105 26.541 Atomic orbital electron populations 1.21634 0.95759 1.01156 1.00545 1.22627 0.94354 0.99335 0.97088 0.91382 1.21971 0.84082 0.95883 0.94740 1.44518 1.10533 1.78924 0.99183 1.19139 0.90976 1.37457 0.87231 0.90502 1.24786 0.97291 1.02149 0.96626 1.69812 1.22378 1.54081 1.10898 0.86010 0.81179 0.77594 0.80815 1.20539 1.21778 1.21780 1.21382 0.93670 0.97253 0.86393 1.22152 0.98204 0.97623 0.93231 0.90864 1.21801 1.01510 0.98525 0.93609 1.21589 1.02615 0.93286 0.83040 1.45934 1.69500 1.12323 1.09326 1.17849 0.78134 0.87406 0.82765 1.90888 1.48916 1.14887 1.84694 1.20049 1.06320 0.95118 0.93215 1.21347 0.96347 0.91063 0.99927 1.21053 0.99252 1.01108 0.91198 1.21316 0.98418 0.92188 1.00183 1.17593 1.05370 0.92295 0.81009 1.91562 1.88956 1.86782 1.42990 1.17700 1.00180 0.78912 0.92699 1.91649 1.90692 1.29313 1.96349 0.93070 0.93878 0.92793 0.87748 0.97067 0.93850 0.96241 0.95982 0.91104 0.91497 0.91122 0.90618 0.76583 0.83717 0.83362 0.83116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.30 37.16 0.35 -1.62 16 2 C -0.11 -2.03 3.09 -88.47 -0.27 -2.30 16 3 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 4 C 0.16 3.78 5.36 -2.53 -0.01 3.76 16 5 N -0.61 -15.55 3.39 -170.06 -0.58 -16.12 16 6 C -0.22 -6.18 10.27 -15.06 -0.15 -6.33 16 7 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 8 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 9 N -0.92 -26.94 10.09 55.49 0.56 -26.38 16 10 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 C 0.14 2.86 6.24 -3.06 -0.02 2.84 16 15 C -0.09 -1.50 2.39 -88.78 -0.21 -1.71 16 16 H 0.07 1.18 8.01 -51.93 -0.42 0.76 16 17 C -0.12 -1.38 4.73 -26.73 -0.13 -1.51 16 18 C 0.12 1.42 5.56 -4.04 -0.02 1.40 16 19 N -0.72 -7.17 5.51 -61.30 -0.34 -7.51 16 20 C 0.55 6.87 7.77 -12.39 -0.10 6.77 16 21 O -0.52 -8.79 15.34 5.30 0.08 -8.71 16 22 C -0.14 -1.37 5.88 -104.92 -0.62 -1.99 16 23 C -0.07 -0.37 9.54 -39.19 -0.37 -0.74 16 24 C -0.11 -0.42 10.03 -39.65 -0.40 -0.82 16 25 C -0.10 -0.53 10.01 -39.45 -0.40 -0.92 16 26 C 0.06 0.50 7.30 -39.41 -0.29 0.21 16 27 F -0.12 -1.22 17.18 2.25 0.04 -1.18 16 28 C 0.13 1.39 7.29 -38.90 -0.28 1.10 16 29 F -0.10 -1.44 15.46 2.25 0.03 -1.41 16 30 H 0.05 0.76 8.11 -51.93 -0.42 0.34 16 31 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 2.83 5.87 -51.93 -0.31 2.52 16 34 H 0.01 0.29 8.04 -51.93 -0.42 -0.13 16 35 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 37 H 0.02 0.45 7.69 -51.93 -0.40 0.05 16 38 H 0.07 0.84 7.94 -51.93 -0.41 0.43 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.08 1.07 7.68 -51.93 -0.40 0.67 16 42 H 0.40 2.57 6.50 -40.82 -0.27 2.30 16 43 H 0.15 0.38 6.40 -52.48 -0.34 0.05 16 44 H 0.15 0.12 8.06 -52.49 -0.42 -0.30 16 45 H 0.15 0.39 8.06 -52.49 -0.42 -0.04 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -34.47 375.35 -8.88 -43.35 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -6.29 Total: -2.58 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -3.02 Total: -2.33 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.35 Total: -50.02 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.71 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.07 Total: -2.59 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.47 -8.88 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103378628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.960 kcal (2) G-P(sol) polarization free energy of solvation -34.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds