Wall clock time and date at job start Tue Mar 31 2020 20:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.88992 * 2 1 4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3 5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1 6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2 7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4 8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47361 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46860 * 120.00310 * 10 8 6 13 13 H 1.48500 * 109.47264 * 240.00123 * 10 8 6 14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2 15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4 16 16 H 1.09000 * 110.67030 * 96.52509 * 15 14 5 17 17 C 1.53002 * 110.84636 * 219.66998 * 15 14 5 18 18 C 1.52998 * 109.47515 * 288.69230 * 17 15 14 19 19 N 1.46499 * 109.47243 * 180.02562 * 18 17 15 20 20 C 1.34777 * 119.99790 * 180.02562 * 19 18 17 21 21 O 1.21570 * 120.00198 * 359.97438 * 20 19 18 22 22 C 1.47701 * 119.99477 * 179.97438 * 20 19 18 23 23 C 1.39679 * 120.15947 * 359.71922 * 22 20 19 24 24 C 1.37846 * 119.92583 * 179.77059 * 23 22 20 25 25 C 1.38447 * 120.23817 * 0.51100 * 24 23 22 26 26 C 1.38387 * 120.31894 * 359.74182 * 25 24 23 27 27 F 1.35095 * 119.96596 * 180.02562 * 26 25 24 28 28 C 1.38543 * 120.06374 * 0.02562 * 26 25 24 29 29 F 1.35107 * 120.11784 * 179.97438 * 28 26 25 30 30 H 1.08996 * 109.47303 * 182.42955 * 1 2 3 31 31 H 1.09006 * 109.46537 * 302.42803 * 1 2 3 32 32 H 1.08996 * 109.47165 * 62.42956 * 1 2 3 33 33 H 1.08998 * 110.36455 * 86.04455 * 4 2 1 34 34 H 1.08995 * 110.37228 * 323.71591 * 4 2 1 35 35 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 36 36 H 1.09007 * 109.88188 * 118.12720 * 14 5 4 37 37 H 1.09002 * 109.88437 * 239.29313 * 14 5 4 38 38 H 1.09004 * 109.46957 * 48.69868 * 17 15 14 39 39 H 1.09005 * 109.47022 * 168.68986 * 17 15 14 40 40 H 1.09005 * 109.47010 * 300.00334 * 18 17 15 41 41 H 1.08992 * 109.47010 * 59.99637 * 18 17 15 42 42 H 0.97000 * 120.00023 * 359.97438 * 19 18 17 43 43 H 1.08004 * 120.03592 * 0.02562 * 23 22 20 44 44 H 1.07999 * 119.88211 * 180.24889 * 24 23 22 45 45 H 1.08001 * 119.84273 * 179.72405 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7741 6 6 4.4642 -1.5651 -1.6083 7 1 5.4143 -1.8707 -1.1957 8 6 4.2957 -1.4944 -2.9844 9 7 3.1396 -1.1164 -3.4873 10 14 5.7102 -1.9344 -4.1224 11 1 6.8932 -2.3243 -3.3139 12 1 5.3104 -3.0691 -4.9931 13 1 6.0512 -0.7601 -4.9651 14 6 3.4667 -1.2785 0.6951 15 6 2.0870 -0.8078 1.2019 16 1 1.4464 -1.6616 1.4228 17 6 2.2359 0.0876 2.4336 18 6 2.6668 -0.7606 3.6318 19 7 2.8088 0.0967 4.8112 20 6 3.1833 -0.4367 5.9909 21 8 3.4029 -1.6293 6.0764 22 6 3.3269 0.4278 7.1798 23 6 3.0811 1.7995 7.0839 24 6 3.2120 2.6011 8.1977 25 6 3.5968 2.0534 9.4096 26 6 3.8479 0.6965 9.5147 27 9 4.2224 0.1695 10.7009 28 6 3.7156 -0.1218 8.4047 29 9 3.9611 -1.4466 8.5060 30 1 -0.3634 -1.0267 0.0436 31 1 -0.3632 0.5511 0.8675 32 1 -0.3633 0.4756 -0.9109 33 1 2.1553 -0.1715 -2.0839 34 1 1.4522 -1.6703 -1.4026 35 1 3.0220 -1.0667 -4.4488 36 1 3.6616 -2.2956 1.0356 37 1 4.2431 -0.6073 1.0620 38 1 2.9893 0.8509 2.2389 39 1 1.2814 0.5666 2.6520 40 1 1.9134 -1.5239 3.8264 41 1 3.6212 -1.2396 3.4133 42 1 2.6339 1.0484 4.7429 43 1 2.7848 2.2308 6.1392 44 1 3.0179 3.6609 8.1237 45 1 3.7017 2.6881 10.2771 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103378628.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:47 Heat of formation + Delta-G solvation = -103.548503 kcal Electronic energy + Delta-G solvation = -28384.409103 eV Core-core repulsion = 24037.347513 eV Total energy + Delta-G solvation = -4347.061590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.58021 -49.66336 -41.22929 -39.80755 -39.20614 -36.56582 -35.06131 -33.07795 -32.52756 -31.82417 -31.36889 -28.51992 -27.44239 -25.99788 -25.02651 -23.87411 -23.32389 -21.97764 -21.39238 -20.68030 -19.54843 -18.87537 -18.43459 -18.30161 -17.53390 -17.40389 -17.09253 -16.68351 -16.55240 -16.12563 -15.92158 -15.81440 -15.60805 -15.41732 -15.03149 -14.91900 -14.57541 -14.17369 -14.01764 -13.68611 -13.53272 -13.36596 -13.12788 -13.07547 -12.88942 -12.77984 -12.77052 -12.72351 -12.38500 -12.18008 -11.93233 -11.78212 -11.42869 -11.27734 -11.21127 -10.91763 -10.74191 -10.39409 -10.05889 -9.87535 -8.87034 -7.77620 -5.21935 -0.56181 -0.17088 1.44608 1.45613 1.56033 1.60986 1.89615 2.45766 2.48553 2.69356 3.24724 3.30805 3.37805 3.63313 3.72161 3.73750 3.75523 3.93104 4.06702 4.11629 4.24733 4.34666 4.48433 4.54066 4.64572 4.68570 4.74948 4.81498 4.84652 4.86225 5.00669 5.03032 5.03900 5.10697 5.14504 5.20206 5.29300 5.35449 5.42589 5.47395 5.56657 5.61507 5.78978 5.86916 6.33257 6.41498 7.08401 7.12120 7.80052 8.43650 9.23699 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019781 B = 0.002011 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.142038 B =13919.481385 C =14552.708072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 H 0.076 0.924 4 C 0.158 3.842 5 N -0.630 5.630 6 C -0.239 4.239 7 H 0.075 0.925 8 C -0.068 4.068 9 N -0.947 5.947 10 Si 0.979 3.021 11 H -0.270 1.270 12 H -0.293 1.293 13 H -0.287 1.287 14 C 0.132 3.868 15 C -0.079 4.079 16 H 0.075 0.925 17 C -0.099 4.099 18 C 0.123 3.877 19 N -0.699 5.699 20 C 0.548 3.452 21 O -0.577 6.577 22 C -0.161 4.161 23 C -0.052 4.052 24 C -0.087 4.087 25 C -0.085 4.085 26 C 0.039 3.961 27 F -0.139 7.139 28 C 0.084 3.916 29 F -0.136 7.136 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.069 0.931 34 H -0.020 1.020 35 H 0.247 0.753 36 H 0.007 0.993 37 H 0.028 0.972 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.048 0.952 42 H 0.420 0.580 43 H 0.181 0.819 44 H 0.197 0.803 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.385 15.752 26.140 30.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.118 4.118 3 H 0.094 0.906 4 C 0.033 3.967 5 N -0.356 5.356 6 C -0.368 4.368 7 H 0.093 0.907 8 C -0.260 4.260 9 N -0.597 5.597 10 Si 0.807 3.193 11 H -0.194 1.194 12 H -0.220 1.220 13 H -0.214 1.214 14 C 0.007 3.993 15 C -0.099 4.099 16 H 0.093 0.907 17 C -0.137 4.137 18 C -0.001 4.001 19 N -0.352 5.352 20 C 0.336 3.664 21 O -0.458 6.458 22 C -0.165 4.165 23 C -0.071 4.071 24 C -0.104 4.104 25 C -0.103 4.103 26 C 0.019 3.981 27 F -0.118 7.118 28 C 0.063 3.937 29 F -0.115 7.115 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.087 0.913 34 H -0.002 1.002 35 H 0.057 0.943 36 H 0.025 0.975 37 H 0.046 0.954 38 H 0.098 0.902 39 H 0.123 0.877 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.259 0.741 43 H 0.198 0.802 44 H 0.214 0.786 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.144 14.806 26.015 30.372 hybrid contribution 1.051 -1.370 -0.801 1.904 sum -4.093 13.436 25.214 28.862 Atomic orbital electron populations 1.21602 0.92958 1.01583 1.02325 1.22463 0.96499 0.98524 0.94323 0.90597 1.21809 0.83490 0.94828 0.96583 1.44876 1.10564 1.78920 1.01233 1.19472 0.91813 1.37347 0.88176 0.90692 1.25621 0.99797 1.02583 0.98048 1.70072 1.24022 1.54911 1.10727 0.85004 0.78605 0.77051 0.78644 1.19438 1.21994 1.21383 1.21599 0.96893 0.96883 0.83905 1.22059 0.95036 0.98299 0.94485 0.90675 1.21649 1.03802 0.97420 0.90804 1.21357 1.01056 0.93626 0.84041 1.45669 1.68434 1.13149 1.07936 1.18364 0.77046 0.87057 0.83947 1.90856 1.51650 1.17611 1.85675 1.19938 1.08598 0.96602 0.91370 1.21808 0.94193 0.88908 1.02162 1.21635 0.96267 1.02990 0.89537 1.21809 0.95949 0.90469 1.02102 1.17929 1.06641 0.93572 0.79979 1.91518 1.89330 1.87289 1.43633 1.18240 1.02867 0.78048 0.94569 1.91546 1.91455 1.31835 1.96632 0.93596 0.89766 0.93106 0.91268 1.00204 0.94341 0.97516 0.95403 0.90202 0.87749 0.91859 0.93321 0.74058 0.80182 0.78561 0.79887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.30 71.98 0.67 -2.73 16 2 C -0.10 -3.35 3.09 -9.40 -0.03 -3.38 16 3 H 0.08 2.49 8.05 -2.39 -0.02 2.47 16 4 C 0.16 7.76 5.36 86.86 0.47 8.23 16 5 N -0.63 -33.25 3.39 -691.95 -2.35 -35.59 16 6 C -0.24 -13.82 10.27 84.04 0.86 -12.96 16 7 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 8 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 9 N -0.95 -57.18 10.09 21.65 0.22 -56.97 16 10 Si 0.98 46.63 29.55 68.60 2.03 48.65 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 12 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 13 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 14 C 0.13 5.50 6.24 86.73 0.54 6.04 16 15 C -0.08 -2.44 2.39 -9.60 -0.02 -2.46 16 16 H 0.07 2.31 8.01 -2.39 -0.02 2.29 16 17 C -0.10 -2.00 4.73 30.59 0.14 -1.86 16 18 C 0.12 2.80 5.56 86.38 0.48 3.28 16 19 N -0.70 -12.37 5.51 -466.12 -2.57 -14.93 16 20 C 0.55 13.53 7.77 86.74 0.67 14.20 16 21 O -0.58 -20.82 15.34 -3.94 -0.06 -20.88 16 22 C -0.16 -2.91 5.88 -20.06 -0.12 -3.03 16 23 C -0.05 -0.34 9.54 22.53 0.21 -0.12 16 24 C -0.09 -0.18 10.03 22.23 0.22 0.04 16 25 C -0.08 -0.54 10.01 22.36 0.22 -0.32 16 26 C 0.04 0.65 7.30 22.38 0.16 0.81 16 27 F -0.14 -2.79 17.18 44.97 0.77 -2.02 16 28 C 0.08 1.91 7.29 22.71 0.17 2.07 16 29 F -0.14 -4.28 15.46 44.97 0.70 -3.58 16 30 H 0.04 1.28 8.11 -2.39 -0.02 1.26 16 31 H 0.08 1.60 8.14 -2.38 -0.02 1.59 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 3.90 5.87 -2.39 -0.01 3.88 16 34 H -0.02 -1.08 8.04 -2.39 -0.02 -1.10 16 35 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 36 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 37 H 0.03 1.13 7.69 -2.39 -0.02 1.11 16 38 H 0.08 1.56 7.94 -2.38 -0.02 1.54 16 39 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.05 1.39 7.68 -2.39 -0.02 1.37 16 42 H 0.42 3.53 6.50 -92.71 -0.60 2.93 16 43 H 0.18 -0.20 6.40 -2.91 -0.02 -0.22 16 44 H 0.20 -1.31 8.06 -2.91 -0.02 -1.33 16 45 H 0.18 -0.01 8.06 -2.91 -0.02 -0.03 16 Total: -1.00 -84.59 375.35 4.28 -80.31 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: 0.42 Total: 0.67 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 5.12 Total: 4.34 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -4.70 Total: -107.49 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.06 Total: -20.88 kcal Atomic # 9 Polarization: -7.07 SS G_CDS: 1.47 Total: -5.60 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -84.59 4.28 -80.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103378628.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.238 kcal (2) G-P(sol) polarization free energy of solvation -84.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds