Wall clock time and date at job start Tue Mar 31 2020 20:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.88866 * 2 1 4 4 C 1.54909 * 111.00872 * 236.11160 * 2 1 3 5 5 N 1.47419 * 104.83536 * 204.88222 * 4 2 1 6 6 C 1.34775 * 125.64896 * 204.08784 * 5 4 2 7 7 O 1.21568 * 120.00298 * 174.73933 * 6 5 4 8 8 C 1.47696 * 119.99936 * 354.74983 * 6 5 4 9 9 C 1.39655 * 120.15552 * 323.69052 * 8 6 5 10 10 C 1.38066 * 119.85288 * 179.71961 * 9 8 6 11 11 F 1.35096 * 119.91872 * 180.25571 * 10 9 8 12 12 C 1.38653 * 120.16605 * 0.53698 * 10 9 8 13 13 C 1.38192 * 120.31249 * 359.76583 * 12 10 9 14 14 C 1.38311 * 120.14842 * 359.95107 * 13 12 10 15 15 F 1.35099 * 120.08757 * 180.02562 * 14 13 12 16 16 C 1.47024 * 108.70280 * 24.12722 * 5 4 2 17 17 C 1.54321 * 107.40252 * 358.86532 * 16 5 4 18 18 H 1.09000 * 110.72222 * 96.25089 * 17 16 5 19 19 C 1.52998 * 110.72007 * 219.51885 * 17 16 5 20 20 C 1.53000 * 109.47290 * 293.54774 * 19 17 16 21 21 N 1.46507 * 109.47125 * 179.97438 * 20 19 17 22 22 C 1.36935 * 119.99796 * 180.02562 * 21 20 19 23 23 H 1.08002 * 119.99964 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99842 * 180.02562 * 22 21 20 25 25 N 1.31620 * 119.99982 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00056 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47265 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47207 * 120.00063 * 26 24 22 29 29 H 1.48503 * 109.47316 * 240.00137 * 26 24 22 30 30 H 1.08995 * 109.47359 * 182.42994 * 1 2 3 31 31 H 1.08998 * 109.47254 * 302.43814 * 1 2 3 32 32 H 1.09002 * 109.46714 * 62.43405 * 1 2 3 33 33 H 1.08997 * 110.36550 * 86.03599 * 4 2 1 34 34 H 1.09008 * 110.36403 * 323.72184 * 4 2 1 35 35 H 1.08002 * 120.06975 * 0.02562 * 9 8 6 36 36 H 1.07995 * 119.84545 * 179.73426 * 12 10 9 37 37 H 1.08003 * 119.92183 * 179.97438 * 13 12 10 38 38 H 1.08999 * 109.87837 * 118.35673 * 16 5 4 39 39 H 1.08997 * 109.88261 * 239.36976 * 16 5 4 40 40 H 1.09008 * 109.46812 * 53.54760 * 19 17 16 41 41 H 1.08994 * 109.47362 * 173.54234 * 19 17 16 42 42 H 1.09003 * 109.46814 * 299.99476 * 20 19 17 43 43 H 1.09005 * 109.47153 * 59.99901 * 20 19 17 44 44 H 0.96998 * 119.99570 * 0.02562 * 21 20 19 45 45 H 0.96996 * 120.00115 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8063 -1.2005 5 7 3.4275 -1.2421 -0.7739 6 6 4.4479 -1.5602 -1.5949 7 8 5.5429 -1.8157 -1.1328 8 6 4.2358 -1.5981 -3.0560 9 6 3.0239 -2.0561 -3.5774 10 6 2.8302 -2.0835 -4.9441 11 9 1.6564 -2.5213 -5.4497 12 6 3.8395 -1.6681 -5.7993 13 6 5.0437 -1.2196 -5.2911 14 6 5.2496 -1.1813 -3.9239 15 9 6.4272 -0.7421 -3.4284 16 6 3.4683 -1.2732 0.6954 17 6 2.0886 -0.8062 1.2054 18 1 1.4496 -1.6611 1.4265 19 6 2.2413 0.0898 2.4362 20 6 2.7943 -0.7337 3.6011 21 7 2.9411 0.1245 4.7794 22 6 3.4228 -0.3970 5.9504 23 1 3.6941 -1.4409 6.0054 24 6 3.5614 0.4160 7.0670 25 7 3.2293 1.6879 7.0003 26 14 4.2178 -0.2954 8.6645 27 1 4.5138 -1.7387 8.4790 28 1 5.4606 0.4196 9.0511 29 1 3.2002 -0.1328 9.7339 30 1 -0.3634 -1.0267 0.0436 31 1 -0.3633 0.5512 0.8673 32 1 -0.3633 0.4756 -0.9110 33 1 2.1554 -0.1717 -2.0838 34 1 1.4522 -1.6704 -1.4024 35 1 2.2381 -2.3834 -2.9127 36 1 3.6840 -1.6958 -6.8676 37 1 5.8257 -0.8980 -5.9630 38 1 3.6664 -2.2884 1.0393 39 1 4.2450 -0.6005 1.0590 40 1 2.9284 0.9050 2.2090 41 1 1.2693 0.4996 2.7101 42 1 2.1072 -1.5488 3.8282 43 1 3.7665 -1.1435 3.3271 44 1 2.6971 1.0619 4.7300 45 1 3.3265 2.2560 7.7804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104293949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:22 Heat of formation + Delta-G solvation = -89.610538 kcal Electronic energy + Delta-G solvation = -28814.673786 eV Core-core repulsion = 24468.216591 eV Total energy + Delta-G solvation = -4346.457195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.45943 -49.30255 -40.72994 -39.03523 -37.93444 -35.20163 -33.53986 -32.18570 -32.02810 -30.56446 -30.14200 -27.33983 -26.72829 -25.02112 -23.95757 -23.14678 -22.43436 -20.84436 -20.45252 -19.89454 -18.16182 -18.00224 -17.66954 -17.15077 -16.74851 -16.56946 -16.21576 -15.76711 -15.41488 -14.98037 -14.79612 -14.70894 -14.50403 -14.38595 -13.85358 -13.75521 -13.37271 -13.23793 -13.10555 -13.01179 -12.88009 -12.78528 -12.48050 -12.27934 -11.90762 -11.77549 -11.49728 -11.20049 -11.04373 -10.85331 -10.64211 -10.48070 -10.29155 -10.23025 -9.95116 -9.85537 -9.65270 -9.15835 -8.85337 -8.84620 -6.89854 -5.74592 -3.03054 0.07512 0.37450 2.26514 2.57337 2.94085 3.45318 3.50996 3.53264 3.54398 3.58687 3.85004 4.04979 4.21096 4.29070 4.46635 4.47985 4.59013 4.66052 4.94157 5.02383 5.12684 5.17959 5.21254 5.28160 5.29759 5.35539 5.42362 5.44449 5.50012 5.58915 5.67865 5.72779 5.84043 5.96866 5.97338 5.99250 6.09980 6.12635 6.25677 6.36717 6.37482 6.84184 6.88521 7.20218 7.72972 7.82754 8.44631 9.55677 10.13840 10.48175 11.48543 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018807 B = 0.002246 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.461271 B =12463.013753 C =13455.345043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.089 0.911 4 C 0.098 3.902 5 N -0.609 5.609 6 C 0.571 3.429 7 O -0.515 6.515 8 C -0.133 4.133 9 C -0.098 4.098 10 C 0.084 3.916 11 F -0.131 7.131 12 C -0.103 4.103 13 C -0.131 4.131 14 C 0.145 3.855 15 F -0.114 7.114 16 C 0.111 3.889 17 C -0.088 4.088 18 H 0.088 0.912 19 C -0.115 4.115 20 C 0.151 3.849 21 N -0.734 5.734 22 C -0.237 4.237 23 H 0.071 0.929 24 C -0.016 4.016 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.292 1.292 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.154 0.846 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.018 0.982 43 H 0.019 0.981 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.930 -5.627 -30.694 31.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.107 0.893 4 C -0.025 4.025 5 N -0.343 5.343 6 C 0.358 3.642 7 O -0.391 6.391 8 C -0.137 4.137 9 C -0.117 4.117 10 C 0.064 3.936 11 F -0.109 7.109 12 C -0.122 4.122 13 C -0.150 4.150 14 C 0.124 3.876 15 F -0.092 7.092 16 C -0.011 4.011 17 C -0.108 4.108 18 H 0.106 0.894 19 C -0.153 4.153 20 C 0.023 3.977 21 N -0.378 5.378 22 C -0.369 4.369 23 H 0.089 0.911 24 C -0.212 4.212 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.219 1.219 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.172 0.828 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.187 -5.920 -30.346 31.200 hybrid contribution 0.251 -0.047 0.873 0.910 sum -3.936 -5.967 -29.473 30.327 Atomic orbital electron populations 1.21695 0.93378 1.02349 1.02385 1.22496 0.96453 0.99673 0.93472 0.89286 1.22659 0.83045 0.98345 0.98469 1.48360 1.12047 1.66183 1.07679 1.17504 0.83614 0.78242 0.84848 1.90884 1.23202 1.48451 1.76563 1.19841 0.94414 1.05331 0.94115 1.21368 0.97043 0.99085 0.94199 1.17463 0.83065 1.01508 0.91515 1.91553 1.44688 1.87138 1.87552 1.21189 0.91781 0.98131 1.01087 1.21017 0.98810 1.02119 0.93067 1.17671 0.81663 0.96882 0.91376 1.91619 1.43454 1.85995 1.88102 1.22202 0.98776 1.02508 0.77589 1.22350 0.94799 0.98874 0.94744 0.89380 1.21729 1.01992 0.98089 0.93492 1.20688 0.96976 0.93270 0.86728 1.42370 1.78409 1.09604 1.07439 1.19286 1.34644 0.94483 0.88439 0.91141 1.24749 1.02402 0.95771 0.98252 1.69669 1.54527 1.04548 1.29590 0.86112 0.78195 0.78053 0.83832 1.20541 1.21849 1.21884 0.92280 0.91446 0.92445 0.90464 0.90930 0.82832 0.83107 0.82800 0.90875 0.90266 0.91622 0.91197 0.96425 0.96287 0.78333 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.30 37.16 0.35 -0.70 16 2 C -0.10 -0.92 3.09 -88.34 -0.27 -1.20 16 3 H 0.09 0.86 8.05 -51.93 -0.42 0.45 16 4 C 0.10 0.81 4.68 -2.53 -0.01 0.80 16 5 N -0.61 -7.18 3.33 -171.69 -0.57 -7.75 16 6 C 0.57 7.74 7.39 -12.40 -0.09 7.64 16 7 O -0.52 -9.16 16.45 5.31 0.09 -9.07 16 8 C -0.13 -1.37 5.42 -104.92 -0.57 -1.94 16 9 C -0.10 -0.75 8.15 -39.12 -0.32 -1.07 16 10 C 0.08 0.57 7.29 -39.49 -0.29 0.28 16 11 F -0.13 -0.95 17.26 2.25 0.04 -0.91 16 12 C -0.10 -0.55 10.01 -39.45 -0.39 -0.94 16 13 C -0.13 -0.82 10.01 -39.57 -0.40 -1.22 16 14 C 0.14 1.43 7.24 -38.97 -0.28 1.15 16 15 F -0.11 -1.42 16.13 2.25 0.04 -1.39 16 16 C 0.11 1.45 5.61 -3.06 -0.02 1.44 16 17 C -0.09 -1.02 2.47 -88.65 -0.22 -1.24 16 18 H 0.09 0.96 8.02 -51.93 -0.42 0.54 16 19 C -0.11 -1.73 4.72 -26.73 -0.13 -1.85 16 20 C 0.15 2.99 6.11 -4.04 -0.02 2.97 16 21 N -0.73 -18.86 5.60 -59.90 -0.34 -19.20 16 22 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 23 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 24 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 25 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 26 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 30 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.56 7.26 -51.93 -0.38 0.18 16 34 H 0.07 0.48 6.80 -51.92 -0.35 0.12 16 35 H 0.15 0.99 5.74 -52.49 -0.30 0.69 16 36 H 0.15 0.40 8.06 -52.49 -0.42 -0.03 16 37 H 0.15 0.58 8.06 -52.48 -0.42 0.16 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.21 7.75 -51.93 -0.40 0.81 16 40 H 0.07 1.03 8.06 -51.92 -0.42 0.62 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.02 0.39 7.49 -51.93 -0.39 0.00 16 44 H 0.38 10.28 7.67 -40.82 -0.31 9.97 16 45 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 377.61 15.07 5.69 5.69 Total: -1.00 -34.51 377.61 -8.58 -43.09 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.32 Total: 3.07 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -2.91 Total: -3.38 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.18 Total: -54.89 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.08 Total: -2.30 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.51 -8.58 -43.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104293949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.516 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds