Wall clock time and date at job start Tue Mar 31 2020 20:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.88866 * 2 1 4 4 C 1.54909 * 111.00872 * 236.11160 * 2 1 3 5 5 N 1.47419 * 104.83536 * 204.88222 * 4 2 1 6 6 C 1.34775 * 125.64896 * 204.08784 * 5 4 2 7 7 O 1.21568 * 120.00298 * 174.73933 * 6 5 4 8 8 C 1.47696 * 119.99936 * 354.74983 * 6 5 4 9 9 C 1.39655 * 120.15552 * 323.69052 * 8 6 5 10 10 C 1.38066 * 119.85288 * 179.71961 * 9 8 6 11 11 F 1.35096 * 119.91872 * 180.25571 * 10 9 8 12 12 C 1.38653 * 120.16605 * 0.53698 * 10 9 8 13 13 C 1.38192 * 120.31249 * 359.76583 * 12 10 9 14 14 C 1.38311 * 120.14842 * 359.95107 * 13 12 10 15 15 F 1.35099 * 120.08757 * 180.02562 * 14 13 12 16 16 C 1.47024 * 108.70280 * 24.12722 * 5 4 2 17 17 C 1.54321 * 107.40252 * 358.86532 * 16 5 4 18 18 H 1.09000 * 110.72222 * 96.25089 * 17 16 5 19 19 C 1.52998 * 110.72007 * 219.51885 * 17 16 5 20 20 C 1.53000 * 109.47290 * 293.54774 * 19 17 16 21 21 N 1.46507 * 109.47125 * 179.97438 * 20 19 17 22 22 C 1.36935 * 119.99796 * 180.02562 * 21 20 19 23 23 H 1.08002 * 119.99964 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99842 * 180.02562 * 22 21 20 25 25 N 1.31620 * 119.99982 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00056 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47265 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47207 * 120.00063 * 26 24 22 29 29 H 1.48503 * 109.47316 * 240.00137 * 26 24 22 30 30 H 1.08995 * 109.47359 * 182.42994 * 1 2 3 31 31 H 1.08998 * 109.47254 * 302.43814 * 1 2 3 32 32 H 1.09002 * 109.46714 * 62.43405 * 1 2 3 33 33 H 1.08997 * 110.36550 * 86.03599 * 4 2 1 34 34 H 1.09008 * 110.36403 * 323.72184 * 4 2 1 35 35 H 1.08002 * 120.06975 * 0.02562 * 9 8 6 36 36 H 1.07995 * 119.84545 * 179.73426 * 12 10 9 37 37 H 1.08003 * 119.92183 * 179.97438 * 13 12 10 38 38 H 1.08999 * 109.87837 * 118.35673 * 16 5 4 39 39 H 1.08997 * 109.88261 * 239.36976 * 16 5 4 40 40 H 1.09008 * 109.46812 * 53.54760 * 19 17 16 41 41 H 1.08994 * 109.47362 * 173.54234 * 19 17 16 42 42 H 1.09003 * 109.46814 * 299.99476 * 20 19 17 43 43 H 1.09005 * 109.47153 * 59.99901 * 20 19 17 44 44 H 0.96998 * 119.99570 * 0.02562 * 21 20 19 45 45 H 0.96996 * 120.00115 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0853 -0.8063 -1.2005 5 7 3.4275 -1.2421 -0.7739 6 6 4.4479 -1.5602 -1.5949 7 8 5.5429 -1.8157 -1.1328 8 6 4.2358 -1.5981 -3.0560 9 6 3.0239 -2.0561 -3.5774 10 6 2.8302 -2.0835 -4.9441 11 9 1.6564 -2.5213 -5.4497 12 6 3.8395 -1.6681 -5.7993 13 6 5.0437 -1.2196 -5.2911 14 6 5.2496 -1.1813 -3.9239 15 9 6.4272 -0.7421 -3.4284 16 6 3.4683 -1.2732 0.6954 17 6 2.0886 -0.8062 1.2054 18 1 1.4496 -1.6611 1.4265 19 6 2.2413 0.0898 2.4362 20 6 2.7943 -0.7337 3.6011 21 7 2.9411 0.1245 4.7794 22 6 3.4228 -0.3970 5.9504 23 1 3.6941 -1.4409 6.0054 24 6 3.5614 0.4160 7.0670 25 7 3.2293 1.6879 7.0003 26 14 4.2178 -0.2954 8.6645 27 1 4.5138 -1.7387 8.4790 28 1 5.4606 0.4196 9.0511 29 1 3.2002 -0.1328 9.7339 30 1 -0.3634 -1.0267 0.0436 31 1 -0.3633 0.5512 0.8673 32 1 -0.3633 0.4756 -0.9110 33 1 2.1554 -0.1717 -2.0838 34 1 1.4522 -1.6704 -1.4024 35 1 2.2381 -2.3834 -2.9127 36 1 3.6840 -1.6958 -6.8676 37 1 5.8257 -0.8980 -5.9630 38 1 3.6664 -2.2884 1.0393 39 1 4.2450 -0.6005 1.0590 40 1 2.9284 0.9050 2.2090 41 1 1.2693 0.4996 2.7101 42 1 2.1072 -1.5488 3.8282 43 1 3.7665 -1.1435 3.3271 44 1 2.6971 1.0619 4.7300 45 1 3.3265 2.2560 7.7804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104293949.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:21 Heat of formation + Delta-G solvation = -110.984856 kcal Electronic energy + Delta-G solvation = -28815.600646 eV Core-core repulsion = 24468.216591 eV Total energy + Delta-G solvation = -4347.384055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.10332 -49.99229 -41.64212 -39.77465 -38.90873 -36.91524 -34.83250 -33.54594 -32.81592 -31.69997 -31.15813 -28.69927 -27.48925 -26.25399 -25.14327 -24.00122 -23.70695 -22.07400 -21.26693 -20.91314 -19.19522 -18.89149 -18.66782 -18.34374 -17.74941 -17.35472 -16.93473 -16.66379 -16.45225 -16.33105 -15.87602 -15.56201 -15.45477 -15.39741 -15.26663 -15.02369 -14.53646 -14.33145 -14.15271 -13.95429 -13.72460 -13.67770 -13.40717 -13.11458 -12.99877 -12.90398 -12.66010 -12.55164 -12.50263 -12.30109 -12.08760 -11.92560 -11.69827 -11.57883 -11.24518 -11.23066 -10.95741 -10.45014 -9.89902 -9.71369 -9.02703 -7.98220 -5.27198 -0.55562 -0.18166 1.40806 1.45060 1.46316 1.56458 1.68590 2.25649 2.53666 2.92192 2.96799 3.18913 3.35399 3.42757 3.43721 3.58385 3.67289 3.80584 3.93161 4.08759 4.19057 4.25262 4.39142 4.39865 4.46749 4.51182 4.61505 4.66953 4.69236 4.73877 4.78270 4.81498 4.86438 4.87537 4.90878 5.01840 5.10677 5.16485 5.27400 5.33392 5.41030 5.47285 5.52512 5.57030 6.24985 6.26316 6.82878 7.30717 8.06976 8.29984 9.25655 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.018807 B = 0.002246 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.461271 B =12463.013753 C =13455.345043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.080 0.920 4 C 0.097 3.903 5 N -0.607 5.607 6 C 0.564 3.436 7 O -0.574 6.574 8 C -0.151 4.151 9 C -0.091 4.091 10 C 0.087 3.913 11 F -0.130 7.130 12 C -0.083 4.083 13 C -0.118 4.118 14 C 0.116 3.884 15 F -0.139 7.139 16 C 0.110 3.890 17 C -0.077 4.077 18 H 0.104 0.896 19 C -0.100 4.100 20 C 0.149 3.851 21 N -0.749 5.749 22 C -0.247 4.247 23 H 0.073 0.927 24 C -0.077 4.077 25 N -0.969 5.969 26 Si 0.974 3.026 27 H -0.267 1.267 28 H -0.293 1.293 29 H -0.289 1.289 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.167 0.833 36 H 0.188 0.812 37 H 0.182 0.818 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.025 0.975 43 H 0.011 0.989 44 H 0.374 0.626 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.885 -6.598 -33.505 34.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 H 0.099 0.901 4 C -0.024 4.024 5 N -0.339 5.339 6 C 0.353 3.647 7 O -0.455 6.455 8 C -0.155 4.155 9 C -0.111 4.111 10 C 0.067 3.933 11 F -0.108 7.108 12 C -0.101 4.101 13 C -0.136 4.136 14 C 0.096 3.904 15 F -0.117 7.117 16 C -0.012 4.012 17 C -0.097 4.097 18 H 0.123 0.877 19 C -0.138 4.138 20 C 0.023 3.977 21 N -0.391 5.391 22 C -0.378 4.378 23 H 0.091 0.909 24 C -0.269 4.269 25 N -0.620 5.620 26 Si 0.803 3.197 27 H -0.192 1.192 28 H -0.220 1.220 29 H -0.216 1.216 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.184 0.816 36 H 0.205 0.795 37 H 0.199 0.801 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.043 0.957 43 H 0.029 0.971 44 H 0.206 0.794 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.191 -6.914 -33.197 34.470 hybrid contribution 0.833 0.226 1.639 1.852 sum -5.358 -6.688 -31.558 32.701 Atomic orbital electron populations 1.21684 0.91411 1.03249 1.03031 1.22467 0.97882 0.98849 0.92125 0.90111 1.22937 0.81264 0.99643 0.98590 1.48441 1.13230 1.65315 1.06877 1.18115 0.82974 0.77176 0.86428 1.90837 1.25501 1.51278 1.77855 1.19610 0.96059 1.07937 0.91936 1.21383 0.96139 0.98444 0.95086 1.17522 0.83350 1.01172 0.91237 1.91566 1.44728 1.87106 1.87413 1.21586 0.90355 0.95500 1.02694 1.21300 0.99899 1.00885 0.91527 1.18149 0.80961 0.98348 0.92966 1.91552 1.44920 1.86595 1.88668 1.22068 0.98934 1.01210 0.79009 1.22246 0.94164 0.99118 0.94131 0.87734 1.21558 1.01467 0.97639 0.93171 1.20869 0.96905 0.93434 0.86538 1.42613 1.78235 1.09824 1.08448 1.19672 1.33891 0.94685 0.89598 0.90883 1.25599 1.03416 0.96241 1.01691 1.69817 1.56069 1.05781 1.30347 0.85060 0.77203 0.77866 0.79563 1.19187 1.22016 1.21583 0.91102 0.92363 0.90446 0.88671 0.88067 0.81609 0.79490 0.80086 0.91811 0.93441 0.92867 0.90550 0.95725 0.97105 0.79413 0.93907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.30 71.98 0.67 -0.94 16 2 C -0.09 -1.53 3.09 -9.31 -0.03 -1.56 16 3 H 0.08 1.48 8.05 -2.39 -0.02 1.46 16 4 C 0.10 1.40 4.68 86.86 0.41 1.80 16 5 N -0.61 -14.40 3.33 -815.38 -2.71 -17.11 16 6 C 0.56 15.93 7.39 86.74 0.64 16.57 16 7 O -0.57 -22.08 16.45 -3.93 -0.06 -22.14 16 8 C -0.15 -3.06 5.42 -20.06 -0.11 -3.17 16 9 C -0.09 -1.20 8.15 22.57 0.18 -1.01 16 10 C 0.09 0.87 7.29 22.33 0.16 1.03 16 11 F -0.13 -1.39 17.26 44.97 0.78 -0.61 16 12 C -0.08 -0.54 10.01 22.36 0.22 -0.32 16 13 C -0.12 -1.16 10.01 22.28 0.22 -0.94 16 14 C 0.12 2.25 7.24 22.67 0.16 2.42 16 15 F -0.14 -3.67 16.13 44.97 0.73 -2.95 16 16 C 0.11 3.02 5.61 86.73 0.49 3.51 16 17 C -0.08 -1.73 2.47 -9.52 -0.02 -1.76 16 18 H 0.10 2.07 8.02 -2.39 -0.02 2.05 16 19 C -0.10 -3.05 4.72 30.59 0.14 -2.91 16 20 C 0.15 6.03 6.11 86.38 0.53 6.56 16 21 N -0.75 -39.42 5.60 -343.43 -1.92 -41.34 16 22 C -0.25 -14.31 9.99 84.03 0.84 -13.47 16 23 H 0.07 4.11 7.83 -2.91 -0.02 4.08 16 24 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 25 N -0.97 -60.63 13.06 21.65 0.28 -60.34 16 26 Si 0.97 47.41 29.55 68.60 2.03 49.44 16 27 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 28 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 29 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 30 H 0.07 0.70 8.12 -2.39 -0.02 0.68 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.10 1.10 7.26 -2.39 -0.02 1.08 16 34 H 0.10 0.95 6.80 -2.38 -0.02 0.93 16 35 H 0.17 1.63 5.74 -2.91 -0.02 1.62 16 36 H 0.19 -0.08 8.06 -2.91 -0.02 -0.10 16 37 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.05 1.59 7.75 -2.39 -0.02 1.57 16 40 H 0.05 1.75 8.06 -2.38 -0.02 1.73 16 41 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 42 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.01 0.46 7.49 -2.38 -0.02 0.45 16 44 H 0.37 20.71 7.67 -92.71 -0.71 20.00 16 45 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 Total: -1.00 -78.91 377.61 4.40 -74.51 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.31 Total: 18.84 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 4.98 Total: 1.71 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -4.35 Total: -118.80 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.06 Total: -22.14 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 1.50 Total: -3.56 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -78.91 4.40 -74.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104293949.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.470 kcal (2) G-P(sol) polarization free energy of solvation -78.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds