Wall clock time and date at job start Tue Mar 31 2020 20:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.30391 * 2 1 4 4 C 1.54387 * 110.43270 * 237.75896 * 2 1 3 5 5 N 1.48145 * 104.61526 * 264.95296 * 4 2 1 6 6 C 1.34777 * 127.83802 * 140.40096 * 5 4 2 7 7 O 1.21574 * 119.99901 * 354.64491 * 6 5 4 8 8 C 1.47699 * 120.00097 * 174.65444 * 6 5 4 9 9 C 1.39679 * 120.15329 * 325.21259 * 8 6 5 10 10 C 1.37853 * 119.92338 * 179.97438 * 9 8 6 11 11 C 1.38443 * 120.24064 * 0.02562 * 10 9 8 12 12 C 1.38380 * 120.31597 * 359.97438 * 11 10 9 13 13 F 1.35098 * 119.96822 * 179.97438 * 12 11 10 14 14 C 1.38549 * 120.06940 * 359.79035 * 12 11 10 15 15 F 1.35099 * 120.11974 * 180.22950 * 14 12 11 16 16 C 1.48148 * 104.32419 * 320.41251 * 5 4 2 17 17 C 1.54293 * 110.34015 * 122.17019 * 2 1 3 18 18 H 1.08999 * 110.34154 * 359.97438 * 17 2 1 19 19 C 1.53003 * 110.34066 * 237.84938 * 17 2 1 20 20 C 1.52992 * 109.47139 * 175.00455 * 19 17 2 21 21 N 1.46494 * 109.47349 * 179.97438 * 20 19 17 22 22 C 1.36937 * 120.00348 * 179.97438 * 21 20 19 23 23 H 1.08005 * 119.99880 * 359.72250 * 22 21 20 24 24 C 1.38810 * 120.00563 * 179.72310 * 22 21 20 25 25 N 1.31619 * 120.00257 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99831 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47456 * 89.99730 * 26 24 22 28 28 H 1.48496 * 109.47265 * 209.99921 * 26 24 22 29 29 H 1.48505 * 109.46958 * 329.99503 * 26 24 22 30 30 H 1.09005 * 109.47245 * 297.82764 * 1 2 3 31 31 H 1.09004 * 109.46929 * 57.82849 * 1 2 3 32 32 H 1.08994 * 109.47507 * 177.83083 * 1 2 3 33 33 H 1.09000 * 110.40401 * 23.73444 * 4 2 1 34 34 H 1.08997 * 110.40401 * 146.16452 * 4 2 1 35 35 H 1.08001 * 120.04180 * 359.95920 * 9 8 6 36 36 H 1.08001 * 119.87691 * 179.97438 * 10 9 8 37 37 H 1.07998 * 119.84287 * 180.02562 * 11 10 9 38 38 H 1.09003 * 110.40787 * 280.80412 * 16 5 4 39 39 H 1.09000 * 110.40618 * 158.37398 * 16 5 4 40 40 H 1.08995 * 109.47384 * 55.00007 * 19 17 2 41 41 H 1.09003 * 109.46571 * 294.99822 * 19 17 2 42 42 H 1.09002 * 109.47883 * 59.99165 * 20 19 17 43 43 H 1.09010 * 109.46885 * 299.99615 * 20 19 17 44 44 H 0.96996 * 120.00256 * 359.71968 * 21 20 19 45 45 H 0.97006 * 119.99817 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0690 -0.7718 -1.2237 5 7 2.3177 -2.1430 -0.7209 6 6 2.0831 -3.3103 -1.3524 7 8 1.5223 -3.3159 -2.4311 8 6 2.5072 -4.5828 -0.7339 9 6 3.6822 -4.6395 0.0192 10 6 4.0733 -5.8295 0.5947 11 6 3.3058 -6.9697 0.4288 12 6 2.1400 -6.9248 -0.3153 13 9 1.3967 -8.0418 -0.4732 14 6 1.7322 -5.7345 -0.8955 15 9 0.5917 -5.6884 -1.6183 16 6 2.8824 -1.9399 0.6336 17 6 2.0663 -0.7703 1.2246 18 1 1.2397 -1.1482 1.8263 19 6 2.9670 0.1336 2.0688 20 6 3.3866 -0.6080 3.3395 21 7 4.2495 0.2572 4.1475 22 6 4.7504 -0.1955 5.3389 23 1 4.5056 -1.1889 5.6849 24 6 5.5727 0.6222 6.1018 25 7 6.0537 0.1871 7.2471 26 14 5.9954 2.3406 5.5037 27 1 4.9851 3.3037 6.0105 28 1 7.3395 2.7229 6.0060 29 1 5.9978 2.3612 4.0187 30 1 -0.3634 0.4797 0.9089 31 1 -0.3633 0.5472 -0.8699 32 1 -0.3634 -1.0268 -0.0389 33 1 1.3253 -0.7882 -2.0204 34 1 2.9968 -0.3226 -1.5777 35 1 4.2838 -3.7522 0.1502 36 1 4.9822 -5.8726 1.1766 37 1 3.6180 -7.8985 0.8829 38 1 3.9373 -1.6732 0.5695 39 1 2.7524 -2.8376 1.2380 40 1 2.4228 1.0385 2.3391 41 1 3.8541 0.4010 1.4945 42 1 3.9308 -1.5129 3.0692 43 1 2.4995 -0.8754 3.9138 44 1 4.4691 1.1495 3.8370 45 1 6.6286 0.7585 7.7800 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104598057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:26 Heat of formation + Delta-G solvation = -83.238441 kcal Electronic energy + Delta-G solvation = -29277.209650 eV Core-core repulsion = 24931.028770 eV Total energy + Delta-G solvation = -4346.180880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.78473 -48.85054 -40.74393 -39.05905 -37.98958 -35.37041 -33.48033 -32.36575 -31.44065 -30.80661 -30.58154 -27.45262 -27.02770 -24.97169 -23.89942 -23.17224 -22.30898 -21.01331 -20.38962 -19.85375 -18.33912 -17.87553 -17.61712 -17.43297 -16.85603 -16.48749 -16.01116 -15.77378 -15.32929 -15.24047 -14.90326 -14.65830 -14.55714 -14.25782 -14.00402 -13.69610 -13.45155 -13.42172 -13.31833 -12.82674 -12.66690 -12.55565 -12.39652 -12.17528 -12.05420 -11.99123 -11.58331 -11.35540 -11.31324 -10.95167 -10.71940 -10.62641 -10.37020 -10.22221 -10.13834 -9.64198 -9.55396 -9.18544 -8.98258 -8.94493 -7.29094 -5.82048 -3.17977 0.17505 0.48503 2.30012 2.50205 3.04301 3.32509 3.34658 3.35415 3.41343 3.87114 3.97053 4.22848 4.29333 4.32664 4.48368 4.54079 4.57204 4.62996 4.95137 5.04998 5.06352 5.17534 5.25656 5.28288 5.39320 5.45582 5.46473 5.47871 5.50679 5.56019 5.56880 5.67084 5.69912 5.72059 5.86267 5.95048 5.97582 6.02672 6.08787 6.22149 6.28257 6.62720 6.68047 7.19518 7.78221 7.93844 8.36935 9.16082 9.88481 10.07819 11.36295 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012141 B = 0.002937 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.731107 B = 9532.832130 C =11269.637756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.091 0.909 4 C 0.110 3.890 5 N -0.614 5.614 6 C 0.582 3.418 7 O -0.526 6.526 8 C -0.139 4.139 9 C -0.068 4.068 10 C -0.103 4.103 11 C -0.102 4.102 12 C 0.059 3.941 13 F -0.125 7.125 14 C 0.119 3.881 15 F -0.111 7.111 16 C 0.096 3.904 17 C -0.092 4.092 18 H 0.086 0.914 19 C -0.122 4.122 20 C 0.156 3.844 21 N -0.757 5.757 22 C -0.246 4.246 23 H 0.090 0.910 24 C 0.004 3.996 25 N -0.934 5.934 26 Si 0.885 3.115 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.025 0.975 43 H 0.026 0.974 44 H 0.361 0.639 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.087 -9.246 -17.823 21.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 H 0.109 0.891 4 C -0.012 4.012 5 N -0.347 5.347 6 C 0.370 3.630 7 O -0.402 6.402 8 C -0.143 4.143 9 C -0.087 4.087 10 C -0.121 4.121 11 C -0.121 4.121 12 C 0.039 3.961 13 F -0.104 7.104 14 C 0.098 3.902 15 F -0.089 7.089 16 C -0.027 4.027 17 C -0.112 4.112 18 H 0.105 0.895 19 C -0.160 4.160 20 C 0.029 3.971 21 N -0.403 5.403 22 C -0.376 4.376 23 H 0.107 0.893 24 C -0.192 4.192 25 N -0.582 5.582 26 Si 0.716 3.284 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.168 0.832 36 H 0.170 0.830 37 H 0.170 0.830 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.043 0.957 43 H 0.044 0.956 44 H 0.193 0.807 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.448 -9.541 -18.309 21.948 hybrid contribution 0.097 1.013 -0.308 1.063 sum -7.351 -8.528 -18.617 21.757 Atomic orbital electron populations 1.21835 0.94235 1.01964 1.01950 1.22210 0.96515 0.99705 0.93885 0.89084 1.22472 1.01192 0.80338 0.97234 1.48817 1.62737 1.05260 1.17902 1.17434 0.79002 0.82011 0.84537 1.90845 1.41668 1.86507 1.21229 1.19832 0.97883 0.93035 1.03513 1.21543 0.94281 0.99602 0.93260 1.21141 1.00477 0.91067 0.99396 1.21337 0.92364 1.01116 0.97240 1.17540 0.93483 0.81966 1.03093 1.91556 1.75553 1.49076 1.94178 1.17595 0.84990 0.92663 0.95002 1.91601 1.46085 1.96796 1.74401 1.22880 0.98144 0.99623 0.82029 1.22165 0.98449 0.94890 0.95704 0.89524 1.21886 0.98798 0.98570 0.96747 1.20656 0.93527 0.93240 0.89696 1.42716 1.59209 1.15285 1.23081 1.19051 1.23337 1.00727 0.94451 0.89258 1.24686 0.99800 0.98042 0.96644 1.69703 1.37987 1.36836 1.13650 0.86538 0.77829 0.85972 0.78093 1.21084 1.21737 1.20332 0.92053 0.92572 0.92703 0.89698 0.90646 0.83228 0.83047 0.83004 0.89803 0.89579 0.91298 0.91588 0.95692 0.95564 0.80691 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.91 37.16 0.33 -0.93 16 2 C -0.10 -0.93 3.30 -89.22 -0.29 -1.22 16 3 H 0.09 0.74 7.71 -51.93 -0.40 0.34 16 4 C 0.11 1.05 6.62 -2.41 -0.02 1.04 16 5 N -0.61 -6.61 3.31 -170.47 -0.56 -7.18 16 6 C 0.58 7.56 7.47 -12.40 -0.09 7.46 16 7 O -0.53 -8.65 16.33 5.30 0.09 -8.56 16 8 C -0.14 -1.54 5.50 -104.92 -0.58 -2.12 16 9 C -0.07 -0.56 7.91 -39.18 -0.31 -0.87 16 10 C -0.10 -0.69 10.03 -39.65 -0.40 -1.09 16 11 C -0.10 -0.74 10.01 -39.45 -0.40 -1.13 16 12 C 0.06 0.60 7.30 -39.41 -0.29 0.31 16 13 F -0.13 -1.37 17.18 2.25 0.04 -1.33 16 14 C 0.12 1.42 7.25 -38.90 -0.28 1.14 16 15 F -0.11 -1.58 16.02 2.25 0.04 -1.55 16 16 C 0.10 0.91 4.02 -2.41 -0.01 0.90 16 17 C -0.09 -0.93 2.71 -89.22 -0.24 -1.17 16 18 H 0.09 0.91 7.71 -51.93 -0.40 0.51 16 19 C -0.12 -1.51 4.51 -26.73 -0.12 -1.63 16 20 C 0.16 2.63 6.13 -4.05 -0.02 2.61 16 21 N -0.76 -16.87 5.41 -59.91 -0.32 -17.20 16 22 C -0.25 -6.69 10.47 -15.06 -0.16 -6.85 16 23 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 24 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 25 N -0.93 -28.62 13.97 55.49 0.78 -27.85 16 26 Si 0.89 21.33 27.74 -169.99 -4.71 16.62 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 29 H -0.28 -6.19 6.52 56.52 0.37 -5.83 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.88 7.57 -51.93 -0.39 0.49 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.15 1.04 6.18 -52.49 -0.32 0.71 16 36 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 38 H 0.08 0.74 7.49 -51.93 -0.39 0.35 16 39 H 0.09 0.78 6.39 -51.93 -0.33 0.45 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.79 7.98 -51.93 -0.41 0.38 16 42 H 0.03 0.41 7.59 -51.93 -0.39 0.02 16 43 H 0.03 0.46 8.14 -51.92 -0.42 0.04 16 44 H 0.36 7.83 5.53 -40.82 -0.23 7.60 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 373.82 15.07 5.63 5.63 Total: -1.00 -33.92 373.82 -8.25 -42.17 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.25 Total: 2.77 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -2.97 Total: -3.53 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.11 Total: -52.22 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.09 Total: -8.56 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.07 Total: -2.88 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.62 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.92 -8.25 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104598057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.066 kcal (2) G-P(sol) polarization free energy of solvation -33.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds