Wall clock time and date at job start Tue Mar 31 2020 20:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.30391 * 2 1 4 4 C 1.54387 * 110.43270 * 237.75896 * 2 1 3 5 5 N 1.48145 * 104.61526 * 264.95296 * 4 2 1 6 6 C 1.34777 * 127.83802 * 140.40096 * 5 4 2 7 7 O 1.21574 * 119.99901 * 354.64491 * 6 5 4 8 8 C 1.47699 * 120.00097 * 174.65444 * 6 5 4 9 9 C 1.39679 * 120.15329 * 325.21259 * 8 6 5 10 10 C 1.37853 * 119.92338 * 179.97438 * 9 8 6 11 11 C 1.38443 * 120.24064 * 0.02562 * 10 9 8 12 12 C 1.38380 * 120.31597 * 359.97438 * 11 10 9 13 13 F 1.35098 * 119.96822 * 179.97438 * 12 11 10 14 14 C 1.38549 * 120.06940 * 359.79035 * 12 11 10 15 15 F 1.35099 * 120.11974 * 180.22950 * 14 12 11 16 16 C 1.48148 * 104.32419 * 320.41251 * 5 4 2 17 17 C 1.54293 * 110.34015 * 122.17019 * 2 1 3 18 18 H 1.08999 * 110.34154 * 359.97438 * 17 2 1 19 19 C 1.53003 * 110.34066 * 237.84938 * 17 2 1 20 20 C 1.52992 * 109.47139 * 175.00455 * 19 17 2 21 21 N 1.46494 * 109.47349 * 179.97438 * 20 19 17 22 22 C 1.36937 * 120.00348 * 179.97438 * 21 20 19 23 23 H 1.08005 * 119.99880 * 359.72250 * 22 21 20 24 24 C 1.38810 * 120.00563 * 179.72310 * 22 21 20 25 25 N 1.31619 * 120.00257 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99831 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47456 * 89.99730 * 26 24 22 28 28 H 1.48496 * 109.47265 * 209.99921 * 26 24 22 29 29 H 1.48505 * 109.46958 * 329.99503 * 26 24 22 30 30 H 1.09005 * 109.47245 * 297.82764 * 1 2 3 31 31 H 1.09004 * 109.46929 * 57.82849 * 1 2 3 32 32 H 1.08994 * 109.47507 * 177.83083 * 1 2 3 33 33 H 1.09000 * 110.40401 * 23.73444 * 4 2 1 34 34 H 1.08997 * 110.40401 * 146.16452 * 4 2 1 35 35 H 1.08001 * 120.04180 * 359.95920 * 9 8 6 36 36 H 1.08001 * 119.87691 * 179.97438 * 10 9 8 37 37 H 1.07998 * 119.84287 * 180.02562 * 11 10 9 38 38 H 1.09003 * 110.40787 * 280.80412 * 16 5 4 39 39 H 1.09000 * 110.40618 * 158.37398 * 16 5 4 40 40 H 1.08995 * 109.47384 * 55.00007 * 19 17 2 41 41 H 1.09003 * 109.46571 * 294.99822 * 19 17 2 42 42 H 1.09002 * 109.47883 * 59.99165 * 20 19 17 43 43 H 1.09010 * 109.46885 * 299.99615 * 20 19 17 44 44 H 0.96996 * 120.00256 * 359.71968 * 21 20 19 45 45 H 0.97006 * 119.99817 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0690 -0.7718 -1.2237 5 7 2.3177 -2.1430 -0.7209 6 6 2.0831 -3.3103 -1.3524 7 8 1.5223 -3.3159 -2.4311 8 6 2.5072 -4.5828 -0.7339 9 6 3.6822 -4.6395 0.0192 10 6 4.0733 -5.8295 0.5947 11 6 3.3058 -6.9697 0.4288 12 6 2.1400 -6.9248 -0.3153 13 9 1.3967 -8.0418 -0.4732 14 6 1.7322 -5.7345 -0.8955 15 9 0.5917 -5.6884 -1.6183 16 6 2.8824 -1.9399 0.6336 17 6 2.0663 -0.7703 1.2246 18 1 1.2397 -1.1482 1.8263 19 6 2.9670 0.1336 2.0688 20 6 3.3866 -0.6080 3.3395 21 7 4.2495 0.2572 4.1475 22 6 4.7504 -0.1955 5.3389 23 1 4.5056 -1.1889 5.6849 24 6 5.5727 0.6222 6.1018 25 7 6.0537 0.1871 7.2471 26 14 5.9954 2.3406 5.5037 27 1 4.9851 3.3037 6.0105 28 1 7.3395 2.7229 6.0060 29 1 5.9978 2.3612 4.0187 30 1 -0.3634 0.4797 0.9089 31 1 -0.3633 0.5472 -0.8699 32 1 -0.3634 -1.0268 -0.0389 33 1 1.3253 -0.7882 -2.0204 34 1 2.9968 -0.3226 -1.5777 35 1 4.2838 -3.7522 0.1502 36 1 4.9822 -5.8726 1.1766 37 1 3.6180 -7.8985 0.8829 38 1 3.9373 -1.6732 0.5695 39 1 2.7524 -2.8376 1.2380 40 1 2.4228 1.0385 2.3391 41 1 3.8541 0.4010 1.4945 42 1 3.9308 -1.5129 3.0692 43 1 2.4995 -0.8754 3.9138 44 1 4.4691 1.1495 3.8370 45 1 6.6286 0.7585 7.7800 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104598057.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:24 Heat of formation + Delta-G solvation = -104.063366 kcal Electronic energy + Delta-G solvation = -29278.112686 eV Core-core repulsion = 24931.028770 eV Total energy + Delta-G solvation = -4347.083916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.64915 -49.72924 -41.60118 -39.81398 -38.92546 -36.93166 -34.59054 -33.78120 -32.37684 -31.97672 -31.46655 -28.66014 -27.80197 -26.08527 -24.94675 -23.89544 -23.73704 -22.21802 -21.21989 -20.70027 -19.57475 -19.15639 -18.66646 -18.24126 -17.73091 -17.35181 -16.89790 -16.66596 -16.44943 -16.14248 -16.02994 -15.83218 -15.67239 -15.44124 -15.16309 -14.73075 -14.50782 -14.40495 -14.36915 -14.04960 -13.73468 -13.36686 -13.26400 -13.11865 -13.00724 -12.94919 -12.80806 -12.71409 -12.41184 -12.23335 -11.98997 -11.79420 -11.60762 -11.50433 -11.30218 -11.20317 -10.89426 -10.29640 -9.93492 -9.82848 -9.22219 -7.97290 -5.30196 -0.55101 -0.23068 1.42718 1.43092 1.46842 1.54393 1.68693 2.30833 2.54126 2.60893 3.05442 3.24509 3.35080 3.44390 3.51597 3.66565 3.69133 3.73624 3.97736 4.02345 4.20485 4.29476 4.33687 4.45603 4.51024 4.53901 4.63608 4.67824 4.71579 4.78574 4.82417 4.85587 4.95566 4.95966 4.98491 5.07352 5.09560 5.13388 5.25232 5.39921 5.43551 5.54121 5.56145 5.82745 6.27028 6.30888 6.85283 7.15131 7.92479 8.10240 9.24227 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012141 B = 0.002937 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.731107 B = 9532.832130 C =11269.637756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 H 0.109 0.891 4 C 0.105 3.895 5 N -0.609 5.609 6 C 0.576 3.424 7 O -0.574 6.574 8 C -0.153 4.153 9 C -0.062 4.062 10 C -0.088 4.088 11 C -0.087 4.087 12 C 0.047 3.953 13 F -0.135 7.135 14 C 0.086 3.914 15 F -0.136 7.136 16 C 0.094 3.906 17 C -0.086 4.086 18 H 0.081 0.919 19 C -0.106 4.106 20 C 0.150 3.850 21 N -0.761 5.761 22 C -0.231 4.231 23 H 0.057 0.943 24 C -0.067 4.067 25 N -0.986 5.986 26 Si 0.955 3.045 27 H -0.282 1.282 28 H -0.300 1.300 29 H -0.244 1.244 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.167 0.833 36 H 0.188 0.812 37 H 0.184 0.816 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.035 0.965 43 H 0.018 0.982 44 H 0.366 0.634 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.690 -8.142 -18.413 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 H 0.127 0.873 4 C -0.017 4.017 5 N -0.341 5.341 6 C 0.365 3.635 7 O -0.454 6.454 8 C -0.157 4.157 9 C -0.081 4.081 10 C -0.106 4.106 11 C -0.105 4.105 12 C 0.027 3.973 13 F -0.114 7.114 14 C 0.064 3.936 15 F -0.114 7.114 16 C -0.028 4.028 17 C -0.106 4.106 18 H 0.099 0.901 19 C -0.144 4.144 20 C 0.024 3.976 21 N -0.407 5.407 22 C -0.363 4.363 23 H 0.075 0.925 24 C -0.259 4.259 25 N -0.637 5.637 26 Si 0.782 3.218 27 H -0.209 1.209 28 H -0.227 1.227 29 H -0.168 1.168 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.184 0.816 36 H 0.205 0.795 37 H 0.201 0.799 38 H 0.119 0.881 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.053 0.947 43 H 0.036 0.964 44 H 0.200 0.800 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.078 -8.430 -18.931 21.596 hybrid contribution -0.362 0.565 -0.067 0.675 sum -6.440 -7.865 -18.998 21.547 Atomic orbital electron populations 1.21816 0.94437 1.00987 1.02576 1.22173 0.96274 1.00284 0.92696 0.87266 1.22629 1.01850 0.79904 0.97275 1.48859 1.61772 1.05199 1.18224 1.17779 0.78471 0.83081 0.84127 1.90808 1.44021 1.87234 1.23359 1.19818 0.99153 0.91930 1.04832 1.21800 0.93033 1.01047 0.92187 1.21582 1.00984 0.89865 0.98167 1.21745 0.90624 1.02710 0.95441 1.17803 0.94491 0.81099 1.03920 1.91525 1.76078 1.49397 1.94379 1.18001 0.85085 0.94087 0.96381 1.91522 1.47559 1.97006 1.75346 1.23013 0.98834 0.99706 0.81244 1.22056 0.97962 0.94828 0.95749 0.90098 1.21733 0.99663 0.98342 0.94700 1.20889 0.92308 0.93511 0.90896 1.42758 1.59598 1.16228 1.22068 1.19053 1.22097 0.99251 0.95863 0.92516 1.25536 1.00570 1.02764 0.96989 1.69893 1.39616 1.38663 1.15556 0.85406 0.76764 0.80173 0.79422 1.20853 1.22706 1.16801 0.91608 0.91755 0.94519 0.91003 0.88771 0.81554 0.79501 0.79888 0.88067 0.89148 0.90938 0.90228 0.94680 0.96437 0.80046 0.93487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.91 71.98 0.64 -1.65 16 2 C -0.10 -1.45 3.30 -9.88 -0.03 -1.48 16 3 H 0.11 1.34 7.71 -2.39 -0.02 1.32 16 4 C 0.11 1.83 6.62 86.53 0.57 2.40 16 5 N -0.61 -12.33 3.31 -811.53 -2.69 -15.02 16 6 C 0.58 15.10 7.47 86.74 0.65 15.75 16 7 O -0.57 -19.81 16.33 -3.95 -0.06 -19.87 16 8 C -0.15 -3.37 5.50 -20.06 -0.11 -3.48 16 9 C -0.06 -0.88 7.91 22.53 0.18 -0.70 16 10 C -0.09 -0.86 10.03 22.23 0.22 -0.64 16 11 C -0.09 -1.02 10.01 22.35 0.22 -0.80 16 12 C 0.05 0.93 7.30 22.38 0.16 1.09 16 13 F -0.14 -3.00 17.18 44.97 0.77 -2.23 16 14 C 0.09 2.12 7.25 22.71 0.16 2.29 16 15 F -0.14 -4.22 16.02 44.97 0.72 -3.50 16 16 C 0.09 1.52 4.02 86.53 0.35 1.87 16 17 C -0.09 -1.49 2.71 -9.89 -0.03 -1.51 16 18 H 0.08 1.53 7.71 -2.39 -0.02 1.51 16 19 C -0.11 -2.22 4.51 30.59 0.14 -2.09 16 20 C 0.15 4.65 6.13 86.38 0.53 5.18 16 21 N -0.76 -31.95 5.41 -343.46 -1.86 -33.81 16 22 C -0.23 -12.45 10.47 84.03 0.88 -11.57 16 23 H 0.06 3.35 8.06 -2.91 -0.02 3.33 16 24 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 25 N -0.99 -61.32 13.97 21.65 0.30 -61.02 16 26 Si 0.96 42.94 27.74 68.60 1.90 44.85 16 27 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 28 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 29 H -0.24 -9.51 6.52 99.48 0.65 -8.86 16 30 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 1.46 7.57 -2.39 -0.02 1.45 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.17 1.73 6.18 -2.91 -0.02 1.71 16 36 H 0.19 0.59 8.06 -2.91 -0.02 0.57 16 37 H 0.18 1.00 8.06 -2.91 -0.02 0.98 16 38 H 0.10 1.36 7.49 -2.39 -0.02 1.34 16 39 H 0.09 1.41 6.39 -2.39 -0.02 1.40 16 40 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.08 1.51 7.98 -2.39 -0.02 1.49 16 42 H 0.04 1.04 7.59 -2.39 -0.02 1.02 16 43 H 0.02 0.58 8.14 -2.38 -0.02 0.57 16 44 H 0.37 14.51 5.53 -92.71 -0.51 14.00 16 45 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -77.08 373.82 4.55 -72.53 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.45 Total: 16.74 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 5.01 Total: 1.33 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -4.24 Total: -109.85 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.06 Total: -19.87 kcal Atomic # 9 Polarization: -7.22 SS G_CDS: 1.49 Total: -5.72 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 1.90 Total: 44.85 kcal Total: -77.08 4.55 -72.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104598057.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.532 kcal (2) G-P(sol) polarization free energy of solvation -77.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds