Wall clock time and date at job start Tue Mar 31 2020 20:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.65657 * 2 1 4 4 C 1.54598 * 110.98770 * 236.84985 * 2 1 3 5 5 N 1.48113 * 103.42522 * 204.37263 * 4 2 1 6 6 C 1.34777 * 127.03730 * 219.29060 * 5 4 2 7 7 O 1.21283 * 120.00463 * 179.68285 * 6 5 4 8 8 C 1.50700 * 119.99675 * 359.40408 * 6 5 4 9 9 C 1.50703 * 109.47148 * 180.28037 * 8 6 5 10 10 C 1.38252 * 119.96614 * 89.99688 * 9 8 6 11 11 C 1.38217 * 120.07179 * 179.97438 * 10 9 8 12 12 C 1.38413 * 119.99460 * 0.02862 * 11 10 9 13 13 F 1.35100 * 120.03295 * 179.97438 * 12 11 10 14 14 C 1.38641 * 119.93416 * 359.97438 * 12 11 10 15 15 F 1.35102 * 120.03947 * 180.02562 * 14 12 11 16 16 C 1.38216 * 119.96031 * 269.72390 * 9 8 6 17 17 C 1.47487 * 105.93196 * 39.02233 * 5 4 2 18 18 C 1.54004 * 107.08487 * 334.78016 * 17 5 4 19 19 H 1.09003 * 110.32797 * 120.19357 * 18 17 5 20 20 C 1.52999 * 110.32819 * 242.31170 * 18 17 5 21 21 N 1.46501 * 109.47007 * 293.54397 * 20 18 17 22 22 C 1.36930 * 119.99876 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00277 * 359.97438 * 22 21 20 24 24 C 1.38818 * 120.00049 * 180.02562 * 22 21 20 25 25 N 1.31618 * 119.99712 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00123 * 179.97438 * 24 22 21 27 27 H 1.48492 * 109.47001 * 89.99941 * 26 24 22 28 28 H 1.48503 * 109.46969 * 210.00005 * 26 24 22 29 29 H 1.48505 * 109.47188 * 330.00083 * 26 24 22 30 30 H 1.09000 * 109.47184 * 296.79889 * 1 2 3 31 31 H 1.08996 * 109.47279 * 56.80477 * 1 2 3 32 32 H 1.09006 * 109.46989 * 176.80289 * 1 2 3 33 33 H 1.09004 * 110.62019 * 85.85590 * 4 2 1 34 34 H 1.09004 * 110.54960 * 322.85200 * 4 2 1 35 35 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 36 36 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 37 37 H 1.08002 * 119.96875 * 359.97438 * 10 9 8 38 38 H 1.07995 * 120.00214 * 179.97438 * 11 10 9 39 39 H 1.07997 * 120.00226 * 0.02562 * 16 9 8 40 40 H 1.08998 * 109.91504 * 94.14277 * 17 5 4 41 41 H 1.08996 * 109.91172 * 215.42025 * 17 5 4 42 42 H 1.08994 * 109.47201 * 53.54683 * 20 18 17 43 43 H 1.09003 * 109.46501 * 173.54719 * 20 18 17 44 44 H 0.96998 * 119.99977 * 359.97438 * 21 20 18 45 45 H 0.96999 * 119.99729 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0837 -0.7893 -1.2085 5 7 3.4321 -1.2056 -0.7587 6 6 4.5593 -1.2403 -1.4967 7 8 5.6027 -1.5999 -0.9937 8 6 4.5219 -0.8384 -2.9486 9 6 5.9005 -0.9721 -3.5425 10 6 6.2902 -2.1654 -4.1218 11 6 7.5538 -2.2902 -4.6676 12 6 8.4309 -1.2199 -4.6341 13 9 9.6664 -1.3412 -5.1669 14 6 8.0401 -0.0232 -4.0532 15 9 8.8943 1.0230 -4.0197 16 6 6.7719 0.1004 -3.5126 17 6 3.2903 -1.5681 0.6639 18 6 2.0776 -0.7917 1.2100 19 1 1.3221 -1.4831 1.5833 20 6 2.5155 0.1657 2.3201 21 7 2.9827 -0.6061 3.4744 22 6 3.4268 0.0412 4.5964 23 1 3.4331 1.1206 4.6302 24 6 3.8701 -0.6901 5.6899 25 7 3.8629 -2.0056 5.6484 26 14 4.4766 0.1929 7.2202 27 1 3.3377 0.4175 8.1462 28 1 5.5069 -0.6370 7.8948 29 1 5.0675 1.5000 6.8360 30 1 -0.3633 0.4633 0.9173 31 1 -0.3633 0.5626 -0.8599 32 1 -0.3633 -1.0261 -0.0573 33 1 2.1524 -0.1478 -2.0871 34 1 1.4612 -1.6600 -1.4145 35 1 3.8299 -1.4860 -3.4873 36 1 4.1896 0.1964 -3.0308 37 1 5.6064 -3.0010 -4.1478 38 1 7.8572 -3.2230 -5.1194 39 1 6.4649 1.0333 -3.0634 40 1 3.1179 -2.6402 0.7584 41 1 4.1895 -1.2845 1.2106 42 1 3.3238 0.7994 1.9555 43 1 1.6713 0.7882 2.6169 44 1 2.9767 -1.5756 3.4441 45 1 4.1729 -2.5166 6.4124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106594739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:02 Heat of formation + Delta-G solvation = -91.138638 kcal Electronic energy + Delta-G solvation = -28614.390215 eV Core-core repulsion = 24267.866757 eV Total energy + Delta-G solvation = -4346.523458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.66969 -48.74617 -40.38899 -39.24974 -37.75886 -34.66130 -33.10681 -32.68512 -31.43103 -31.09872 -29.33486 -27.77814 -26.37427 -25.27898 -23.58486 -23.30607 -22.25117 -21.18065 -19.90610 -19.29108 -18.16008 -17.48578 -17.35983 -17.18944 -16.83162 -16.46877 -16.16092 -15.41397 -15.15587 -14.95603 -14.74510 -14.64591 -14.26504 -14.25450 -14.08458 -13.60075 -13.37467 -13.34789 -12.92742 -12.80114 -12.66799 -12.36220 -12.24653 -12.08329 -11.94797 -11.77149 -11.55562 -11.47001 -11.09903 -10.88072 -10.63499 -10.52883 -10.34139 -9.99641 -9.89508 -9.66194 -9.34511 -8.89781 -8.87469 -8.61794 -6.92574 -5.75741 -3.04724 0.59767 0.72167 2.61185 2.80584 3.20178 3.44785 3.50038 3.51933 3.52241 4.04433 4.16420 4.25650 4.40857 4.48017 4.60225 4.64994 4.76150 4.78871 4.93224 4.97057 5.09580 5.26129 5.30446 5.41804 5.43814 5.47845 5.51434 5.57776 5.59992 5.67765 5.69105 5.74266 5.95248 6.00639 6.04693 6.12254 6.15712 6.24442 6.39664 6.44082 6.45635 6.69990 6.84187 7.56614 7.70610 8.16471 8.42806 9.54166 10.10645 10.45075 11.47059 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.002556 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.807183 B =10950.554445 C =12561.403379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.084 0.916 4 C 0.102 3.898 5 N -0.620 5.620 6 C 0.528 3.472 7 O -0.527 6.527 8 C -0.098 4.098 9 C -0.045 4.045 10 C -0.085 4.085 11 C -0.123 4.123 12 C 0.064 3.936 13 F -0.131 7.131 14 C 0.070 3.930 15 F -0.129 7.129 16 C -0.110 4.110 17 C 0.111 3.889 18 C -0.103 4.103 19 H 0.086 0.914 20 C 0.163 3.837 21 N -0.732 5.732 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.140 0.860 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.019 0.981 43 H 0.022 0.978 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.375 1.315 -26.039 26.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.121 4.121 3 H 0.102 0.898 4 C -0.021 4.021 5 N -0.354 5.354 6 C 0.316 3.684 7 O -0.403 6.403 8 C -0.138 4.138 9 C -0.045 4.045 10 C -0.103 4.103 11 C -0.142 4.142 12 C 0.044 3.956 13 F -0.109 7.109 14 C 0.050 3.950 15 F -0.107 7.107 16 C -0.129 4.129 17 C -0.011 4.011 18 C -0.122 4.122 19 H 0.105 0.895 20 C 0.035 3.965 21 N -0.377 5.377 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.208 1.208 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.157 0.843 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.037 0.963 43 H 0.039 0.961 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.561 1.271 -25.720 25.878 hybrid contribution 0.713 0.297 0.928 1.208 sum -1.847 1.569 -24.792 24.910 Atomic orbital electron populations 1.21729 0.93805 1.02028 1.02170 1.22229 0.96064 0.99765 0.93997 0.89779 1.22604 0.83248 0.98624 0.97625 1.48842 1.08011 1.66135 1.12428 1.19976 0.82436 0.78481 0.87533 1.90791 1.29592 1.47009 1.72927 1.20670 0.94930 1.04923 0.93290 1.19187 0.95172 0.93139 0.97033 1.20932 0.95665 0.97176 0.96563 1.21032 0.93500 0.98014 1.01657 1.17697 0.82138 0.94547 1.01188 1.91525 1.39110 1.96370 1.83915 1.17598 0.89618 0.84186 1.03595 1.91536 1.69285 1.55230 1.94688 1.20933 0.91303 1.00946 0.99748 1.22186 1.00330 0.98753 0.79782 1.22391 0.96588 0.97984 0.95249 0.89532 1.20691 0.96114 0.92809 0.86866 1.42358 1.77196 1.05691 1.12422 1.19198 1.34780 0.91218 0.91974 0.91251 1.24740 1.02169 0.95474 0.98502 1.69653 1.53304 1.04137 1.30981 0.86193 0.78189 0.78488 0.83345 1.21734 1.21741 1.20767 0.91736 0.92673 0.92404 0.90414 0.90738 0.87372 0.87482 0.84260 0.83570 0.83685 0.91758 0.89103 0.96348 0.96067 0.78254 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.17 37.16 0.34 -0.85 16 2 C -0.10 -1.05 3.18 -88.93 -0.28 -1.33 16 3 H 0.08 0.91 7.87 -51.93 -0.41 0.50 16 4 C 0.10 0.88 6.38 -2.32 -0.01 0.87 16 5 N -0.62 -7.83 3.29 -169.98 -0.56 -8.39 16 6 C 0.53 6.97 7.88 -10.98 -0.09 6.88 16 7 O -0.53 -9.61 16.37 5.55 0.09 -9.52 16 8 C -0.10 -0.79 4.76 -29.03 -0.14 -0.93 16 9 C -0.04 -0.42 4.37 -104.62 -0.46 -0.88 16 10 C -0.09 -0.73 9.70 -39.58 -0.38 -1.11 16 11 C -0.12 -1.10 10.02 -39.52 -0.40 -1.49 16 12 C 0.06 0.72 7.31 -39.37 -0.29 0.43 16 13 F -0.13 -1.56 17.18 2.25 0.04 -1.53 16 14 C 0.07 0.82 7.31 -39.37 -0.29 0.53 16 15 F -0.13 -1.65 17.18 2.25 0.04 -1.61 16 16 C -0.11 -1.15 9.68 -39.52 -0.38 -1.53 16 17 C 0.11 1.76 6.31 -2.98 -0.02 1.74 16 18 C -0.10 -1.50 2.64 -89.25 -0.24 -1.74 16 19 H 0.09 1.27 7.85 -51.93 -0.41 0.86 16 20 C 0.16 3.15 5.35 -4.04 -0.02 3.13 16 21 N -0.73 -18.33 5.33 -59.91 -0.32 -18.65 16 22 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 26 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 33 H 0.08 0.46 7.24 -51.93 -0.38 0.08 16 34 H 0.07 0.56 8.02 -51.93 -0.42 0.14 16 35 H 0.11 0.55 8.09 -51.92 -0.42 0.13 16 36 H 0.11 0.62 7.84 -51.93 -0.41 0.22 16 37 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.09 1.83 7.48 -51.93 -0.39 1.44 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.38 10.07 7.51 -40.82 -0.31 9.76 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 383.89 15.07 5.79 5.79 Total: -1.00 -34.80 383.89 -8.61 -43.40 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.48 Total: 4.16 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -2.90 Total: -3.66 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.15 Total: -54.70 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.08 Total: -3.13 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.80 -8.61 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106594739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.738 kcal (2) G-P(sol) polarization free energy of solvation -34.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds