Wall clock time and date at job start Tue Mar 31 2020 20:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.65657 * 2 1 4 4 C 1.54598 * 110.98770 * 236.84985 * 2 1 3 5 5 N 1.48113 * 103.42522 * 204.37263 * 4 2 1 6 6 C 1.34777 * 127.03730 * 219.29060 * 5 4 2 7 7 O 1.21283 * 120.00463 * 179.68285 * 6 5 4 8 8 C 1.50700 * 119.99675 * 359.40408 * 6 5 4 9 9 C 1.50703 * 109.47148 * 180.28037 * 8 6 5 10 10 C 1.38252 * 119.96614 * 89.99688 * 9 8 6 11 11 C 1.38217 * 120.07179 * 179.97438 * 10 9 8 12 12 C 1.38413 * 119.99460 * 0.02862 * 11 10 9 13 13 F 1.35100 * 120.03295 * 179.97438 * 12 11 10 14 14 C 1.38641 * 119.93416 * 359.97438 * 12 11 10 15 15 F 1.35102 * 120.03947 * 180.02562 * 14 12 11 16 16 C 1.38216 * 119.96031 * 269.72390 * 9 8 6 17 17 C 1.47487 * 105.93196 * 39.02233 * 5 4 2 18 18 C 1.54004 * 107.08487 * 334.78016 * 17 5 4 19 19 H 1.09003 * 110.32797 * 120.19357 * 18 17 5 20 20 C 1.52999 * 110.32819 * 242.31170 * 18 17 5 21 21 N 1.46501 * 109.47007 * 293.54397 * 20 18 17 22 22 C 1.36930 * 119.99876 * 180.02562 * 21 20 18 23 23 H 1.08000 * 120.00277 * 359.97438 * 22 21 20 24 24 C 1.38818 * 120.00049 * 180.02562 * 22 21 20 25 25 N 1.31618 * 119.99712 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00123 * 179.97438 * 24 22 21 27 27 H 1.48492 * 109.47001 * 89.99941 * 26 24 22 28 28 H 1.48503 * 109.46969 * 210.00005 * 26 24 22 29 29 H 1.48505 * 109.47188 * 330.00083 * 26 24 22 30 30 H 1.09000 * 109.47184 * 296.79889 * 1 2 3 31 31 H 1.08996 * 109.47279 * 56.80477 * 1 2 3 32 32 H 1.09006 * 109.46989 * 176.80289 * 1 2 3 33 33 H 1.09004 * 110.62019 * 85.85590 * 4 2 1 34 34 H 1.09004 * 110.54960 * 322.85200 * 4 2 1 35 35 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 36 36 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 37 37 H 1.08002 * 119.96875 * 359.97438 * 10 9 8 38 38 H 1.07995 * 120.00214 * 179.97438 * 11 10 9 39 39 H 1.07997 * 120.00226 * 0.02562 * 16 9 8 40 40 H 1.08998 * 109.91504 * 94.14277 * 17 5 4 41 41 H 1.08996 * 109.91172 * 215.42025 * 17 5 4 42 42 H 1.08994 * 109.47201 * 53.54683 * 20 18 17 43 43 H 1.09003 * 109.46501 * 173.54719 * 20 18 17 44 44 H 0.96998 * 119.99977 * 359.97438 * 21 20 18 45 45 H 0.96999 * 119.99729 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0837 -0.7893 -1.2085 5 7 3.4321 -1.2056 -0.7587 6 6 4.5593 -1.2403 -1.4967 7 8 5.6027 -1.5999 -0.9937 8 6 4.5219 -0.8384 -2.9486 9 6 5.9005 -0.9721 -3.5425 10 6 6.2902 -2.1654 -4.1218 11 6 7.5538 -2.2902 -4.6676 12 6 8.4309 -1.2199 -4.6341 13 9 9.6664 -1.3412 -5.1669 14 6 8.0401 -0.0232 -4.0532 15 9 8.8943 1.0230 -4.0197 16 6 6.7719 0.1004 -3.5126 17 6 3.2903 -1.5681 0.6639 18 6 2.0776 -0.7917 1.2100 19 1 1.3221 -1.4831 1.5833 20 6 2.5155 0.1657 2.3201 21 7 2.9827 -0.6061 3.4744 22 6 3.4268 0.0412 4.5964 23 1 3.4331 1.1206 4.6302 24 6 3.8701 -0.6901 5.6899 25 7 3.8629 -2.0056 5.6484 26 14 4.4766 0.1929 7.2202 27 1 3.3377 0.4175 8.1462 28 1 5.5069 -0.6370 7.8948 29 1 5.0675 1.5000 6.8360 30 1 -0.3633 0.4633 0.9173 31 1 -0.3633 0.5626 -0.8599 32 1 -0.3633 -1.0261 -0.0573 33 1 2.1524 -0.1478 -2.0871 34 1 1.4612 -1.6600 -1.4145 35 1 3.8299 -1.4860 -3.4873 36 1 4.1896 0.1964 -3.0308 37 1 5.6064 -3.0010 -4.1478 38 1 7.8572 -3.2230 -5.1194 39 1 6.4649 1.0333 -3.0634 40 1 3.1179 -2.6402 0.7584 41 1 4.1895 -1.2845 1.2106 42 1 3.3238 0.7994 1.9555 43 1 1.6713 0.7882 2.6169 44 1 2.9767 -1.5756 3.4441 45 1 4.1729 -2.5166 6.4124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106594739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:01 Heat of formation + Delta-G solvation = -112.868075 kcal Electronic energy + Delta-G solvation = -28615.332475 eV Core-core repulsion = 24267.866757 eV Total energy + Delta-G solvation = -4347.465717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.55201 -49.63904 -41.34576 -40.08785 -38.83431 -36.44285 -34.25702 -33.55099 -33.05453 -31.83684 -30.74501 -28.77727 -27.13327 -26.78702 -25.03734 -24.30231 -23.18376 -22.37083 -20.98985 -20.29032 -19.20161 -18.97798 -18.26767 -18.10386 -17.89273 -17.37240 -17.18107 -16.68972 -16.40595 -16.06861 -15.82407 -15.56915 -15.38960 -15.28594 -15.13866 -14.98429 -14.88358 -14.29040 -14.00371 -13.94769 -13.61945 -13.26324 -13.14879 -13.05005 -12.96139 -12.78501 -12.77675 -12.73401 -12.46921 -12.27439 -12.16874 -11.95791 -11.80723 -11.44465 -11.34133 -10.99031 -10.93540 -10.08901 -9.68787 -9.67853 -9.02559 -7.97930 -5.26608 -0.17750 -0.00771 1.44069 1.46396 1.54534 1.64956 1.91745 2.41734 2.53363 2.76495 3.25453 3.35437 3.43404 3.50528 3.60239 3.60739 3.80841 3.92772 4.01082 4.09283 4.21943 4.29667 4.37882 4.50918 4.56003 4.58880 4.62874 4.71196 4.74811 4.81660 4.82822 4.88436 4.95555 4.99023 5.00508 5.05956 5.16078 5.26527 5.30771 5.31604 5.42942 5.46299 5.62051 5.71528 6.24590 6.62573 7.18412 7.30796 8.06903 8.29345 9.25579 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.002556 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.807183 B =10950.554445 C =12561.403379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.093 4.093 3 H 0.081 0.919 4 C 0.104 3.896 5 N -0.619 5.619 6 C 0.521 3.479 7 O -0.591 6.591 8 C -0.085 4.085 9 C -0.052 4.052 10 C -0.081 4.081 11 C -0.120 4.120 12 C 0.044 3.956 13 F -0.142 7.142 14 C 0.042 3.958 15 F -0.144 7.144 16 C -0.118 4.118 17 C 0.116 3.884 18 C -0.094 4.094 19 H 0.087 0.913 20 C 0.163 3.837 21 N -0.745 5.745 22 C -0.247 4.247 23 H 0.073 0.927 24 C -0.076 4.076 25 N -0.968 5.968 26 Si 0.973 3.027 27 H -0.282 1.282 28 H -0.296 1.296 29 H -0.272 1.272 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.152 0.848 36 H 0.138 0.862 37 H 0.170 0.830 38 H 0.171 0.829 39 H 0.153 0.847 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.006 0.994 43 H 0.028 0.972 44 H 0.374 0.626 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.955 1.759 -28.363 29.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 H 0.100 0.900 4 C -0.017 4.017 5 N -0.352 5.352 6 C 0.311 3.689 7 O -0.471 6.471 8 C -0.124 4.124 9 C -0.053 4.053 10 C -0.099 4.099 11 C -0.139 4.139 12 C 0.024 3.976 13 F -0.120 7.120 14 C 0.022 3.978 15 F -0.123 7.123 16 C -0.137 4.137 17 C -0.008 4.008 18 C -0.113 4.113 19 H 0.105 0.895 20 C 0.037 3.963 21 N -0.388 5.388 22 C -0.379 4.379 23 H 0.091 0.909 24 C -0.268 4.268 25 N -0.619 5.619 26 Si 0.801 3.199 27 H -0.209 1.209 28 H -0.223 1.223 29 H -0.197 1.197 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.140 0.860 34 H 0.116 0.884 35 H 0.170 0.830 36 H 0.156 0.844 37 H 0.188 0.812 38 H 0.189 0.811 39 H 0.171 0.829 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.024 0.976 43 H 0.046 0.954 44 H 0.206 0.794 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.197 1.768 -28.092 28.623 hybrid contribution 1.492 0.166 1.637 2.221 sum -3.705 1.934 -26.455 26.783 Atomic orbital electron populations 1.21705 0.91823 1.02967 1.02733 1.22240 0.97559 0.99133 0.92361 0.90022 1.22925 0.80780 1.00040 0.97925 1.48952 1.09857 1.65592 1.10787 1.21002 0.81368 0.77093 0.89411 1.90770 1.31937 1.49864 1.74573 1.20762 0.94888 1.07628 0.89111 1.19484 0.95908 0.93055 0.96804 1.21365 0.95784 0.97660 0.95088 1.21374 0.93287 0.98150 1.01057 1.18033 0.82299 0.95290 1.02002 1.91488 1.39910 1.96454 1.84196 1.17936 0.90317 0.84323 1.05201 1.91485 1.69864 1.55924 1.94979 1.21148 0.91001 1.01987 0.99583 1.21861 0.98315 0.98582 0.82018 1.22271 0.96069 0.97467 0.95506 0.89466 1.20835 0.95450 0.93413 0.86639 1.42585 1.77256 1.05573 1.13378 1.19610 1.33726 0.91605 0.92942 0.90886 1.25575 1.03254 0.96252 1.01702 1.69811 1.54876 1.05558 1.31645 0.85153 0.77547 0.77524 0.79635 1.20873 1.22276 1.19706 0.93306 0.89729 0.91592 0.85978 0.88374 0.83025 0.84417 0.81225 0.81107 0.82904 0.92286 0.94541 0.97634 0.95389 0.79431 0.93986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.17 71.98 0.66 -1.11 16 2 C -0.09 -1.65 3.18 -9.70 -0.03 -1.68 16 3 H 0.08 1.52 7.87 -2.39 -0.02 1.50 16 4 C 0.10 1.31 6.38 86.61 0.55 1.86 16 5 N -0.62 -14.35 3.29 -810.08 -2.67 -17.02 16 6 C 0.52 12.77 7.88 87.66 0.69 13.46 16 7 O -0.59 -21.86 16.37 -3.04 -0.05 -21.91 16 8 C -0.09 -0.99 4.76 29.10 0.14 -0.85 16 9 C -0.05 -0.85 4.37 -19.87 -0.09 -0.94 16 10 C -0.08 -1.16 9.70 22.27 0.22 -0.94 16 11 C -0.12 -1.95 10.02 22.31 0.22 -1.73 16 12 C 0.04 0.98 7.31 22.41 0.16 1.14 16 13 F -0.14 -3.49 17.18 44.97 0.77 -2.72 16 14 C 0.04 1.01 7.31 22.41 0.16 1.17 16 15 F -0.14 -3.88 17.18 44.97 0.77 -3.10 16 16 C -0.12 -2.38 9.68 22.31 0.22 -2.16 16 17 C 0.12 3.74 6.31 86.53 0.55 4.28 16 18 C -0.09 -2.69 2.64 -9.90 -0.03 -2.72 16 19 H 0.09 2.51 7.85 -2.39 -0.02 2.49 16 20 C 0.16 6.42 5.35 86.38 0.46 6.88 16 21 N -0.75 -38.56 5.33 -343.45 -1.83 -40.39 16 22 C -0.25 -14.19 9.99 84.04 0.84 -13.35 16 23 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 24 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 25 N -0.97 -60.70 13.06 21.65 0.28 -60.42 16 26 Si 0.97 47.41 29.55 68.60 2.03 49.43 16 27 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 28 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 29 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.79 8.11 -2.38 -0.02 0.77 16 33 H 0.12 0.56 7.24 -2.38 -0.02 0.54 16 34 H 0.10 0.88 8.02 -2.39 -0.02 0.86 16 35 H 0.15 0.53 8.09 -2.38 -0.02 0.51 16 36 H 0.14 0.84 7.84 -2.39 -0.02 0.82 16 37 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 38 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 39 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.04 1.57 7.48 -2.39 -0.02 1.55 16 42 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.37 20.52 7.51 -92.71 -0.70 19.83 16 45 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -82.29 383.89 4.82 -77.47 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.31 Total: 19.35 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 5.20 Total: -0.69 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -4.22 Total: -117.83 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.05 Total: -21.91 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 1.55 Total: -5.82 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.43 kcal Total: -82.29 4.82 -77.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106594739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.398 kcal (2) G-P(sol) polarization free energy of solvation -82.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds