Wall clock time and date at job start Tue Mar 31 2020 20:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.30551 * 2 1 4 4 C 1.54395 * 110.43060 * 237.76283 * 2 1 3 5 5 N 1.48145 * 104.61454 * 217.21687 * 4 2 1 6 6 C 1.34784 * 127.83336 * 219.58574 * 5 4 2 7 7 O 1.21276 * 119.99520 * 180.02562 * 6 5 4 8 8 C 1.50696 * 120.00103 * 359.97438 * 6 5 4 9 9 C 1.50702 * 109.46962 * 180.02562 * 8 6 5 10 10 C 1.38264 * 119.99789 * 264.73142 * 9 8 6 11 11 C 1.38217 * 120.06751 * 179.72426 * 10 9 8 12 12 C 1.38257 * 120.06796 * 0.54764 * 11 10 9 13 13 C 1.38373 * 120.00221 * 359.72395 * 12 11 10 14 14 F 1.35099 * 120.03403 * 180.02562 * 13 12 11 15 15 C 1.38362 * 120.00272 * 84.99940 * 9 8 6 16 16 F 1.35107 * 120.03257 * 0.02992 * 15 9 8 17 17 C 1.48140 * 104.32775 * 39.58831 * 5 4 2 18 18 C 1.54281 * 110.34397 * 122.17674 * 2 1 3 19 19 H 1.09003 * 110.34267 * 0.10023 * 18 2 1 20 20 C 1.53002 * 110.34138 * 237.95320 * 18 2 1 21 21 N 1.46501 * 109.47252 * 174.99940 * 20 18 2 22 22 C 1.36940 * 120.00367 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99325 * 0.02562 * 22 21 20 24 24 C 1.38807 * 120.00027 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00486 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99937 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47003 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47431 * 119.99970 * 26 24 22 29 29 H 1.48497 * 109.46937 * 240.00209 * 26 24 22 30 30 H 1.08999 * 109.47069 * 299.29750 * 1 2 3 31 31 H 1.09004 * 109.47187 * 59.29880 * 1 2 3 32 32 H 1.09004 * 109.47207 * 179.30026 * 1 2 3 33 33 H 1.08990 * 110.40604 * 336.00312 * 4 2 1 34 34 H 1.09000 * 110.40401 * 98.43734 * 4 2 1 35 35 H 1.09001 * 109.47305 * 300.00300 * 8 6 5 36 36 H 1.08997 * 109.46834 * 60.00638 * 8 6 5 37 37 H 1.07995 * 119.96594 * 359.97438 * 10 9 8 38 38 H 1.08002 * 119.96425 * 180.25286 * 11 10 9 39 39 H 1.07999 * 119.99823 * 179.70612 * 12 11 10 40 40 H 1.08998 * 110.41105 * 201.63246 * 17 5 4 41 41 H 1.09004 * 110.40870 * 79.19127 * 17 5 4 42 42 H 1.08998 * 109.46863 * 294.99655 * 20 18 2 43 43 H 1.09000 * 109.47400 * 54.99892 * 20 18 2 44 44 H 0.97008 * 119.99868 * 359.97438 * 21 20 18 45 45 H 0.96997 * 120.00779 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7718 -1.2238 5 7 3.2692 -1.4794 -0.7205 6 6 4.4461 -1.6626 -1.3514 7 8 5.3405 -2.2698 -0.8017 8 6 4.6501 -1.1140 -2.7400 9 6 6.0394 -1.4533 -3.2151 10 6 7.0642 -0.5374 -3.0652 11 6 8.3402 -0.8493 -3.4952 12 6 8.5921 -2.0735 -4.0864 13 6 7.5674 -2.9901 -4.2429 14 9 7.8129 -4.1867 -4.8201 15 6 6.2883 -2.6793 -3.8063 16 9 5.2861 -3.5725 -3.9585 17 6 2.8824 -1.9401 0.6333 18 6 2.0663 -0.7703 1.2244 19 1 1.2398 -1.1503 1.8249 20 6 2.9650 0.1343 2.0700 21 7 3.3667 -0.5762 3.2867 22 6 4.1787 0.0386 4.2021 23 1 4.5226 1.0474 4.0273 24 6 4.5588 -0.6344 5.3551 25 7 4.1385 -1.8632 5.5688 26 14 5.6659 0.2045 6.6041 27 1 5.9961 1.5734 6.1324 28 1 4.9651 0.2863 7.9107 29 1 6.9172 -0.5794 6.7618 30 1 -0.3633 0.5029 0.8962 31 1 -0.3634 0.5247 -0.8837 32 1 -0.3634 -1.0276 -0.0126 33 1 1.3271 -1.4869 -1.5790 34 1 2.3421 -0.0790 -2.0198 35 1 3.9175 -1.5548 -3.4161 36 1 4.5253 -0.0313 -2.7248 37 1 6.8684 0.4212 -2.6080 38 1 9.1404 -0.1342 -3.3736 39 1 9.5885 -2.3142 -4.4263 40 1 3.7692 -2.1288 1.2384 41 1 2.2675 -2.8377 0.5681 42 1 3.8521 0.4033 1.4968 43 1 2.4192 1.0382 2.3406 44 1 3.0575 -1.4821 3.4438 45 1 4.4044 -2.3336 6.3743 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106704783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:10 Heat of formation + Delta-G solvation = -88.202181 kcal Electronic energy + Delta-G solvation = -29244.230679 eV Core-core repulsion = 24897.834555 eV Total energy + Delta-G solvation = -4346.396124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.61529 -48.69639 -40.24010 -39.16131 -37.73620 -34.57115 -33.20789 -32.69535 -31.39420 -30.52926 -29.34359 -27.96992 -26.33636 -25.37161 -23.40341 -23.06437 -22.44657 -21.15992 -19.74104 -19.25569 -18.05690 -17.53587 -17.34667 -17.10643 -16.82631 -16.33568 -15.91480 -15.41765 -15.08279 -15.05100 -14.78060 -14.62541 -14.31771 -14.19947 -13.73018 -13.43456 -13.37674 -13.20070 -12.86522 -12.75144 -12.71852 -12.41412 -12.22626 -11.99078 -11.87068 -11.62858 -11.50222 -11.46437 -11.07670 -10.85992 -10.62258 -10.51366 -10.28544 -9.94798 -9.83950 -9.63465 -9.12996 -8.93647 -8.85753 -8.57924 -6.89199 -5.73258 -3.01920 0.70248 0.73060 2.70954 2.89089 3.24858 3.45878 3.51006 3.53553 3.56661 4.08696 4.20706 4.41778 4.47286 4.54564 4.64177 4.65964 4.79474 4.83880 4.97088 5.03565 5.11844 5.31429 5.37083 5.44779 5.48404 5.49689 5.56614 5.61952 5.70034 5.70908 5.76182 5.83862 5.97225 5.99416 6.08814 6.14387 6.20192 6.21976 6.44996 6.49245 6.51081 6.73605 6.88808 7.66031 7.72990 8.25334 8.45297 9.56573 10.13707 10.48092 11.49713 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010446 B = 0.003065 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.933344 B = 9132.881175 C =10847.419705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 H 0.083 0.917 4 C 0.103 3.897 5 N -0.620 5.620 6 C 0.534 3.466 7 O -0.525 6.525 8 C -0.099 4.099 9 C -0.071 4.071 10 C -0.087 4.087 11 C -0.098 4.098 12 C -0.127 4.127 13 C 0.066 3.934 14 F -0.130 7.130 15 C 0.082 3.918 16 F -0.127 7.127 17 C 0.110 3.890 18 C -0.105 4.105 19 H 0.088 0.912 20 C 0.164 3.836 21 N -0.732 5.732 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.906 3.094 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.291 1.291 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.098 0.902 41 H 0.065 0.935 42 H 0.017 0.983 43 H 0.020 0.980 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.188 3.951 -24.455 24.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.101 0.899 4 C -0.020 4.020 5 N -0.354 5.354 6 C 0.321 3.679 7 O -0.400 6.400 8 C -0.139 4.139 9 C -0.072 4.072 10 C -0.105 4.105 11 C -0.116 4.116 12 C -0.146 4.146 13 C 0.046 3.954 14 F -0.109 7.109 15 C 0.062 3.938 16 F -0.105 7.105 17 C -0.012 4.012 18 C -0.124 4.124 19 H 0.106 0.894 20 C 0.036 3.964 21 N -0.376 5.376 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.581 5.581 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.124 0.876 36 H 0.130 0.870 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.163 0.837 40 H 0.116 0.884 41 H 0.084 0.916 42 H 0.035 0.965 43 H 0.037 0.963 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.516 3.636 -24.160 24.438 hybrid contribution 0.306 -0.317 0.727 0.850 sum -0.210 3.319 -23.433 23.668 Atomic orbital electron populations 1.21811 0.94045 1.02011 1.01969 1.22118 0.95995 0.99924 0.94063 0.89862 1.22531 0.87079 0.95459 0.96926 1.48931 1.12461 1.55913 1.18125 1.19851 0.80846 0.80298 0.86857 1.90786 1.40898 1.41183 1.67174 1.20591 0.94320 1.03826 0.95130 1.19261 0.96547 0.92536 0.98861 1.21034 0.91754 0.99641 0.98063 1.21054 0.97164 0.96124 0.97282 1.21091 0.98674 0.93591 1.01261 1.17625 0.92971 0.83489 1.01316 1.91523 1.94729 1.42640 1.81996 1.17452 0.84283 0.88753 1.03311 1.91516 1.58807 1.66540 1.93640 1.22474 1.00462 0.96033 0.82247 1.22418 0.98608 0.95833 0.95556 0.89355 1.20664 0.94470 0.93391 0.87830 1.42368 1.59318 1.16426 1.19491 1.19236 1.21630 0.97690 0.98391 0.91269 1.24728 1.01153 0.96423 0.98610 1.69660 1.49373 1.11223 1.27833 0.86130 0.80243 0.78440 0.81466 1.20600 1.21883 1.21858 0.91907 0.92711 0.92437 0.90925 0.90624 0.87583 0.86991 0.84144 0.84033 0.83726 0.88375 0.91647 0.96478 0.96271 0.78282 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.92 37.16 0.33 -0.93 16 2 C -0.10 -1.11 3.30 -89.22 -0.29 -1.41 16 3 H 0.08 0.92 7.71 -51.93 -0.40 0.52 16 4 C 0.10 1.02 6.46 -2.41 -0.02 1.00 16 5 N -0.62 -8.74 3.32 -169.31 -0.56 -9.30 16 6 C 0.53 8.19 7.91 -10.98 -0.09 8.10 16 7 O -0.53 -10.69 16.30 5.56 0.09 -10.60 16 8 C -0.10 -1.03 4.58 -29.04 -0.13 -1.17 16 9 C -0.07 -0.82 4.38 -104.57 -0.46 -1.28 16 10 C -0.09 -0.84 9.68 -39.58 -0.38 -1.22 16 11 C -0.10 -0.83 10.04 -39.58 -0.40 -1.22 16 12 C -0.13 -1.19 10.02 -39.52 -0.40 -1.58 16 13 C 0.07 0.80 7.31 -39.37 -0.29 0.51 16 14 F -0.13 -1.68 17.18 2.25 0.04 -1.64 16 15 C 0.08 1.07 7.25 -39.37 -0.29 0.79 16 16 F -0.13 -1.80 16.48 2.25 0.04 -1.76 16 17 C 0.11 1.80 6.48 -2.41 -0.02 1.78 16 18 C -0.10 -1.60 2.74 -89.22 -0.24 -1.84 16 19 H 0.09 1.36 7.71 -51.93 -0.40 0.96 16 20 C 0.16 3.27 5.37 -4.04 -0.02 3.25 16 21 N -0.73 -18.70 5.21 -59.91 -0.31 -19.01 16 22 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 23 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -28.72 13.06 55.49 0.72 -27.99 16 26 Si 0.91 22.89 29.55 -169.99 -5.02 17.86 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 33 H 0.07 0.62 7.85 -51.93 -0.41 0.21 16 34 H 0.08 0.55 7.30 -51.93 -0.38 0.17 16 35 H 0.11 0.92 7.79 -51.93 -0.40 0.52 16 36 H 0.11 0.83 7.86 -51.93 -0.41 0.42 16 37 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 38 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.10 2.06 7.31 -51.93 -0.38 1.68 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.38 10.27 7.61 -40.82 -0.31 9.96 16 45 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 382.65 15.07 5.77 5.77 Total: -1.00 -35.72 382.65 -8.62 -44.33 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.44 Total: 5.00 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -2.93 Total: -2.65 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.15 Total: -56.31 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.08 Total: -3.41 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.72 -8.62 -44.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106704783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.869 kcal (2) G-P(sol) polarization free energy of solvation -35.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds