Wall clock time and date at job start Tue Mar 31 2020 20:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.30551 * 2 1 4 4 C 1.54395 * 110.43060 * 237.76283 * 2 1 3 5 5 N 1.48145 * 104.61454 * 217.21687 * 4 2 1 6 6 C 1.34784 * 127.83336 * 219.58574 * 5 4 2 7 7 O 1.21276 * 119.99520 * 180.02562 * 6 5 4 8 8 C 1.50696 * 120.00103 * 359.97438 * 6 5 4 9 9 C 1.50702 * 109.46962 * 180.02562 * 8 6 5 10 10 C 1.38264 * 119.99789 * 264.73142 * 9 8 6 11 11 C 1.38217 * 120.06751 * 179.72426 * 10 9 8 12 12 C 1.38257 * 120.06796 * 0.54764 * 11 10 9 13 13 C 1.38373 * 120.00221 * 359.72395 * 12 11 10 14 14 F 1.35099 * 120.03403 * 180.02562 * 13 12 11 15 15 C 1.38362 * 120.00272 * 84.99940 * 9 8 6 16 16 F 1.35107 * 120.03257 * 0.02992 * 15 9 8 17 17 C 1.48140 * 104.32775 * 39.58831 * 5 4 2 18 18 C 1.54281 * 110.34397 * 122.17674 * 2 1 3 19 19 H 1.09003 * 110.34267 * 0.10023 * 18 2 1 20 20 C 1.53002 * 110.34138 * 237.95320 * 18 2 1 21 21 N 1.46501 * 109.47252 * 174.99940 * 20 18 2 22 22 C 1.36940 * 120.00367 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99325 * 0.02562 * 22 21 20 24 24 C 1.38807 * 120.00027 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00486 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99937 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47003 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47431 * 119.99970 * 26 24 22 29 29 H 1.48497 * 109.46937 * 240.00209 * 26 24 22 30 30 H 1.08999 * 109.47069 * 299.29750 * 1 2 3 31 31 H 1.09004 * 109.47187 * 59.29880 * 1 2 3 32 32 H 1.09004 * 109.47207 * 179.30026 * 1 2 3 33 33 H 1.08990 * 110.40604 * 336.00312 * 4 2 1 34 34 H 1.09000 * 110.40401 * 98.43734 * 4 2 1 35 35 H 1.09001 * 109.47305 * 300.00300 * 8 6 5 36 36 H 1.08997 * 109.46834 * 60.00638 * 8 6 5 37 37 H 1.07995 * 119.96594 * 359.97438 * 10 9 8 38 38 H 1.08002 * 119.96425 * 180.25286 * 11 10 9 39 39 H 1.07999 * 119.99823 * 179.70612 * 12 11 10 40 40 H 1.08998 * 110.41105 * 201.63246 * 17 5 4 41 41 H 1.09004 * 110.40870 * 79.19127 * 17 5 4 42 42 H 1.08998 * 109.46863 * 294.99655 * 20 18 2 43 43 H 1.09000 * 109.47400 * 54.99892 * 20 18 2 44 44 H 0.97008 * 119.99868 * 359.97438 * 21 20 18 45 45 H 0.96997 * 120.00779 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7718 -1.2238 5 7 3.2692 -1.4794 -0.7205 6 6 4.4461 -1.6626 -1.3514 7 8 5.3405 -2.2698 -0.8017 8 6 4.6501 -1.1140 -2.7400 9 6 6.0394 -1.4533 -3.2151 10 6 7.0642 -0.5374 -3.0652 11 6 8.3402 -0.8493 -3.4952 12 6 8.5921 -2.0735 -4.0864 13 6 7.5674 -2.9901 -4.2429 14 9 7.8129 -4.1867 -4.8201 15 6 6.2883 -2.6793 -3.8063 16 9 5.2861 -3.5725 -3.9585 17 6 2.8824 -1.9401 0.6333 18 6 2.0663 -0.7703 1.2244 19 1 1.2398 -1.1503 1.8249 20 6 2.9650 0.1343 2.0700 21 7 3.3667 -0.5762 3.2867 22 6 4.1787 0.0386 4.2021 23 1 4.5226 1.0474 4.0273 24 6 4.5588 -0.6344 5.3551 25 7 4.1385 -1.8632 5.5688 26 14 5.6659 0.2045 6.6041 27 1 5.9961 1.5734 6.1324 28 1 4.9651 0.2863 7.9107 29 1 6.9172 -0.5794 6.7618 30 1 -0.3633 0.5029 0.8962 31 1 -0.3634 0.5247 -0.8837 32 1 -0.3634 -1.0276 -0.0126 33 1 1.3271 -1.4869 -1.5790 34 1 2.3421 -0.0790 -2.0198 35 1 3.9175 -1.5548 -3.4161 36 1 4.5253 -0.0313 -2.7248 37 1 6.8684 0.4212 -2.6080 38 1 9.1404 -0.1342 -3.3736 39 1 9.5885 -2.3142 -4.4263 40 1 3.7692 -2.1288 1.2384 41 1 2.2675 -2.8377 0.5681 42 1 3.8521 0.4033 1.4968 43 1 2.4192 1.0382 2.3406 44 1 3.0575 -1.4821 3.4438 45 1 4.4044 -2.3336 6.3743 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106704783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:09 Heat of formation + Delta-G solvation = -110.838220 kcal Electronic energy + Delta-G solvation = -29245.212251 eV Core-core repulsion = 24897.834555 eV Total energy + Delta-G solvation = -4347.377696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.55927 -49.65178 -41.33039 -40.03292 -38.90347 -36.42029 -34.30162 -33.74429 -33.08345 -31.31078 -30.76243 -29.05573 -27.23537 -26.86880 -25.15222 -23.87100 -23.41882 -22.46084 -20.87860 -20.37181 -19.20859 -18.93589 -18.37997 -18.19832 -17.88877 -17.32909 -17.05371 -16.67671 -16.48263 -16.03882 -15.83122 -15.71923 -15.57995 -15.34379 -15.20789 -14.91078 -14.54890 -14.27299 -14.01868 -13.94754 -13.64543 -13.28287 -13.16798 -13.08853 -12.95180 -12.85547 -12.77037 -12.74154 -12.55655 -12.27106 -12.11170 -11.96071 -11.79135 -11.47572 -11.33507 -11.04156 -10.96927 -9.94162 -9.77281 -9.74074 -9.02167 -7.97510 -5.26371 -0.08461 -0.07262 1.43763 1.45911 1.55461 1.58288 1.90528 2.41632 2.53656 2.76987 3.22977 3.35906 3.40833 3.48137 3.60012 3.71795 3.81139 3.87558 3.94256 4.15122 4.21237 4.26651 4.27841 4.41779 4.43841 4.59372 4.60418 4.68876 4.75025 4.79682 4.84700 4.91081 4.95804 4.96197 5.08614 5.09428 5.13137 5.25631 5.26141 5.32112 5.38200 5.45894 5.60121 5.74593 6.24811 6.57996 7.11794 7.30724 8.07105 8.29329 9.26357 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010446 B = 0.003065 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.933344 B = 9132.881175 C =10847.419705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 H 0.089 0.911 4 C 0.102 3.898 5 N -0.620 5.620 6 C 0.524 3.476 7 O -0.590 6.590 8 C -0.088 4.088 9 C -0.086 4.086 10 C -0.090 4.090 11 C -0.091 4.091 12 C -0.123 4.123 13 C 0.039 3.961 14 F -0.143 7.143 15 C 0.051 3.949 16 F -0.143 7.143 17 C 0.110 3.890 18 C -0.096 4.096 19 H 0.086 0.914 20 C 0.166 3.834 21 N -0.745 5.745 22 C -0.245 4.245 23 H 0.074 0.926 24 C -0.077 4.077 25 N -0.970 5.970 26 Si 0.973 3.027 27 H -0.264 1.264 28 H -0.289 1.289 29 H -0.296 1.296 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.151 0.849 37 H 0.165 0.835 38 H 0.178 0.822 39 H 0.171 0.829 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.005 0.995 43 H 0.027 0.973 44 H 0.373 0.627 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.616 6.882 -26.337 27.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 H 0.107 0.893 4 C -0.019 4.019 5 N -0.353 5.353 6 C 0.314 3.686 7 O -0.470 6.470 8 C -0.127 4.127 9 C -0.087 4.087 10 C -0.108 4.108 11 C -0.108 4.108 12 C -0.142 4.142 13 C 0.019 3.981 14 F -0.122 7.122 15 C 0.031 3.969 16 F -0.122 7.122 17 C -0.013 4.013 18 C -0.115 4.115 19 H 0.105 0.895 20 C 0.039 3.961 21 N -0.388 5.388 22 C -0.377 4.377 23 H 0.092 0.908 24 C -0.269 4.269 25 N -0.620 5.620 26 Si 0.802 3.198 27 H -0.188 1.188 28 H -0.216 1.216 29 H -0.224 1.224 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.169 0.831 37 H 0.182 0.818 38 H 0.196 0.804 39 H 0.188 0.812 40 H 0.060 0.940 41 H 0.094 0.906 42 H 0.023 0.977 43 H 0.045 0.955 44 H 0.204 0.796 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.994 6.625 -26.095 26.941 hybrid contribution 0.460 -1.197 1.290 1.819 sum -0.534 5.428 -24.804 25.397 Atomic orbital electron populations 1.21784 0.91972 1.02627 1.02959 1.22107 0.97558 0.99509 0.91917 0.89305 1.22865 0.85605 0.96235 0.97169 1.49074 1.13580 1.55624 1.17052 1.20818 0.80121 0.79328 0.88338 1.90751 1.43106 1.44125 1.69055 1.20656 0.94407 1.05919 0.91704 1.19519 0.97811 0.92400 0.98996 1.21462 0.91779 1.00204 0.97349 1.21533 0.97735 0.96135 0.95427 1.21478 0.99053 0.93254 1.00377 1.18027 0.93682 0.83861 1.02493 1.91480 1.94804 1.43520 1.82375 1.17866 0.84485 0.89489 1.05103 1.91456 1.59492 1.67263 1.93985 1.22259 0.98335 0.97273 0.83435 1.22306 0.97312 0.95142 0.96755 0.89531 1.20800 0.94755 0.94176 0.86319 1.42609 1.59052 1.16261 1.20871 1.19652 1.21314 0.97873 0.98855 0.90811 1.25591 1.03213 0.97212 1.00877 1.69822 1.51092 1.12792 1.28342 0.85073 0.77867 0.78006 0.78842 1.18832 1.21580 1.22366 0.92793 0.89808 0.92123 0.88790 0.86674 0.85591 0.83081 0.81771 0.80430 0.81167 0.93976 0.90636 0.97742 0.95468 0.79552 0.94036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.92 71.98 0.64 -1.29 16 2 C -0.09 -1.73 3.30 -9.89 -0.03 -1.77 16 3 H 0.09 1.64 7.71 -2.39 -0.02 1.62 16 4 C 0.10 1.64 6.46 86.54 0.56 2.20 16 5 N -0.62 -16.90 3.32 -807.97 -2.68 -19.58 16 6 C 0.52 15.90 7.91 87.65 0.69 16.60 16 7 O -0.59 -25.16 16.30 -3.02 -0.05 -25.21 16 8 C -0.09 -1.64 4.58 29.10 0.13 -1.51 16 9 C -0.09 -1.89 4.38 -19.83 -0.09 -1.98 16 10 C -0.09 -1.53 9.68 22.27 0.22 -1.31 16 11 C -0.09 -1.28 10.04 22.27 0.22 -1.06 16 12 C -0.12 -2.11 10.02 22.31 0.22 -1.89 16 13 C 0.04 0.96 7.31 22.41 0.16 1.13 16 14 F -0.14 -3.84 17.18 44.97 0.77 -3.07 16 15 C 0.05 1.34 7.25 22.41 0.16 1.51 16 16 F -0.14 -4.26 16.48 44.97 0.74 -3.52 16 17 C 0.11 3.72 6.48 86.54 0.56 4.28 16 18 C -0.10 -2.88 2.74 -9.89 -0.03 -2.91 16 19 H 0.09 2.65 7.71 -2.39 -0.02 2.63 16 20 C 0.17 6.67 5.37 86.38 0.46 7.13 16 21 N -0.75 -39.30 5.21 -343.45 -1.79 -41.09 16 22 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 23 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 24 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 25 N -0.97 -61.57 13.06 21.65 0.28 -61.29 16 26 Si 0.97 47.65 29.55 68.60 2.03 49.68 16 27 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 28 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 29 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.06 0.85 8.13 -2.38 -0.02 0.83 16 33 H 0.09 1.19 7.85 -2.39 -0.02 1.17 16 34 H 0.12 1.01 7.30 -2.39 -0.02 0.99 16 35 H 0.13 1.85 7.79 -2.39 -0.02 1.83 16 36 H 0.15 1.57 7.86 -2.39 -0.02 1.55 16 37 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 38 H 0.18 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.04 1.90 7.31 -2.39 -0.02 1.88 16 41 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.37 20.94 7.61 -92.70 -0.71 20.24 16 45 H 0.25 15.39 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -84.20 382.65 4.81 -79.38 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 0.31 Total: 23.07 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 5.20 Total: 1.62 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -4.19 Total: -121.96 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 9 Polarization: -8.10 SS G_CDS: 1.51 Total: -6.59 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.68 kcal Total: -84.20 4.81 -79.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106704783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.455 kcal (2) G-P(sol) polarization free energy of solvation -84.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds