Wall clock time and date at job start Tue Mar 31 2020 20:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00078 * 2 1 4 4 H 1.09001 * 109.47098 * 329.99404 * 3 2 1 5 5 C 1.52997 * 109.46922 * 209.99786 * 3 2 1 6 6 C 1.50706 * 109.47267 * 65.00097 * 5 3 2 7 7 O 1.21279 * 119.99693 * 359.97438 * 6 5 3 8 8 N 1.34773 * 119.99967 * 179.97438 * 6 5 3 9 9 C 1.47485 * 127.03027 * 179.97438 * 8 6 5 10 10 C 1.54006 * 107.08438 * 154.51678 * 9 8 6 11 11 H 1.08999 * 110.32646 * 120.19795 * 10 9 8 12 12 C 1.53001 * 110.32709 * 242.31023 * 10 9 8 13 13 N 1.46502 * 109.47260 * 293.54491 * 12 10 9 14 14 C 1.36933 * 119.99807 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00438 * 359.97438 * 14 13 12 16 16 C 1.38810 * 119.99802 * 179.97438 * 14 13 12 17 17 N 1.31625 * 120.00258 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00149 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46883 * 90.00061 * 18 16 14 20 20 H 1.48500 * 109.47154 * 210.00119 * 18 16 14 21 21 H 1.48498 * 109.46713 * 330.00122 * 18 16 14 22 22 C 1.54619 * 105.04067 * 1.30631 * 10 9 8 23 23 H 1.09004 * 110.73495 * 263.51124 * 22 10 9 24 24 C 1.52997 * 110.73774 * 140.36826 * 22 10 9 25 25 C 1.48111 * 127.03618 * 359.68047 * 8 6 5 26 26 C 1.52997 * 109.47269 * 89.99684 * 3 2 1 27 27 F 1.39905 * 109.47157 * 179.97438 * 26 3 2 28 28 F 1.39900 * 109.47010 * 60.00294 * 26 3 2 29 29 F 1.39897 * 109.47422 * 299.99986 * 26 3 2 30 30 H 1.09004 * 109.47222 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47529 * 300.00390 * 1 2 3 32 32 H 1.09000 * 109.47258 * 60.00144 * 1 2 3 33 33 H 1.09000 * 109.47278 * 184.99536 * 5 3 2 34 34 H 1.08994 * 109.47510 * 305.00045 * 5 3 2 35 35 H 1.09002 * 109.91579 * 273.87480 * 9 8 6 36 36 H 1.09001 * 109.91675 * 34.96325 * 9 8 6 37 37 H 1.09001 * 109.47068 * 53.54398 * 12 10 9 38 38 H 1.08997 * 109.46756 * 173.54221 * 12 10 9 39 39 H 0.97003 * 119.99918 * 0.02562 * 13 12 10 40 40 H 0.96996 * 120.00506 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.47133 * 59.99761 * 24 22 10 42 42 H 1.09003 * 109.47075 * 179.97438 * 24 22 10 43 43 H 1.08994 * 109.47531 * 299.99921 * 24 22 10 44 44 H 1.08995 * 110.66409 * 337.77154 * 25 8 6 45 45 H 1.09004 * 110.66177 * 100.88672 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 3.3589 1.2631 -0.7212 6 6 3.1417 0.9234 -2.1733 7 8 2.0187 0.7334 -2.5901 8 7 4.1952 0.8309 -3.0086 9 6 4.1623 0.5096 -4.4477 10 6 5.4219 1.1313 -5.0790 11 1 6.0369 0.3571 -5.5379 12 6 5.0313 2.1840 -6.1183 13 7 4.3625 1.5317 -7.2467 14 6 3.9198 2.2791 -8.3052 15 1 4.0633 3.3495 -8.3080 16 6 3.2866 1.6610 -9.3747 17 7 3.1112 0.3565 -9.3711 18 14 2.6832 2.6805 -10.8191 19 1 3.7598 2.7827 -11.8368 20 1 1.4925 2.0291 -11.4217 21 1 2.3178 4.0401 -10.3468 22 6 6.1775 1.7899 -3.9017 23 1 5.9431 2.8525 -3.8389 24 6 7.6864 1.5772 -4.0396 25 6 5.6225 1.0368 -2.6706 26 6 2.2176 1.7714 1.4425 27 9 2.7872 3.0492 1.4424 28 9 3.0715 0.8808 2.1020 29 9 0.9844 1.8100 2.1020 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 3.8427 2.2368 -0.6444 34 1 3.9931 0.5050 -0.2617 35 1 4.1721 -0.5714 -4.5871 36 1 3.2673 0.9343 -4.9025 37 1 4.3551 2.9088 -5.6648 38 1 5.9268 2.6946 -6.4724 39 1 4.2326 0.5704 -7.2437 40 1 2.6684 -0.0755 -10.1182 41 1 8.0322 2.0221 -4.9727 42 1 8.1980 2.0492 -3.2008 43 1 7.9039 0.5092 -4.0439 44 1 5.7209 1.6455 -1.7718 45 1 6.1302 0.0803 -2.5461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106846293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:09 Heat of formation + Delta-G solvation = -223.859028 kcal Electronic energy + Delta-G solvation = -30605.037728 eV Core-core repulsion = 25821.989857 eV Total energy + Delta-G solvation = -4783.047871 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.45204 -47.99556 -47.89897 -40.26844 -38.75576 -37.56921 -34.65803 -33.08694 -32.60114 -31.41713 -29.28119 -27.57840 -26.76053 -26.34949 -25.24557 -23.35114 -22.54923 -21.18297 -19.94043 -19.45822 -19.02438 -18.64661 -18.41338 -17.18874 -16.98641 -16.49659 -16.14406 -15.60507 -15.22054 -14.82155 -14.77015 -14.65534 -14.59986 -14.37283 -14.30395 -14.09863 -14.06321 -14.02081 -13.58281 -13.32909 -12.97804 -12.86128 -12.64236 -12.51798 -12.50598 -12.08458 -11.93131 -11.77588 -11.59169 -11.45220 -11.09453 -10.88129 -10.63086 -10.51608 -10.33102 -10.18349 -9.99382 -9.86278 -9.66059 -8.87926 -8.60644 -6.92458 -5.75707 -3.04789 2.22723 2.60607 2.88507 3.01471 3.37915 3.44396 3.49477 3.51408 3.59554 3.93921 4.28898 4.41579 4.49390 4.57236 4.61790 4.79661 4.94259 4.98332 5.03545 5.17757 5.26382 5.31240 5.34737 5.44778 5.50084 5.52709 5.59018 5.70255 5.76258 5.97039 6.06471 6.13579 6.17571 6.25112 6.40530 6.45053 6.51174 6.70902 6.84943 7.56128 7.70434 8.14401 8.42770 9.54081 10.10781 10.45263 11.47045 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.002665 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.303124 B =10503.305175 C =11621.164569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.347 6.347 3 C 0.068 3.932 4 H 0.116 0.884 5 C -0.142 4.142 6 C 0.539 3.461 7 O -0.528 6.528 8 N -0.618 5.618 9 C 0.113 3.887 10 C -0.103 4.103 11 H 0.087 0.913 12 C 0.163 3.837 13 N -0.733 5.733 14 C -0.240 4.240 15 H 0.070 0.930 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.100 4.100 23 H 0.084 0.916 24 C -0.140 4.140 25 C 0.101 3.899 26 C 0.430 3.570 27 F -0.180 7.180 28 F -0.175 7.175 29 F -0.181 7.181 30 H 0.095 0.905 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.019 0.981 38 H 0.022 0.978 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.764 1.424 24.498 24.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.264 6.264 3 C 0.007 3.993 4 H 0.134 0.866 5 C -0.182 4.182 6 C 0.326 3.674 7 O -0.404 6.404 8 N -0.352 5.352 9 C -0.009 4.009 10 C -0.122 4.122 11 H 0.105 0.895 12 C 0.035 3.965 13 N -0.377 5.377 14 C -0.372 4.372 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.581 5.581 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.120 4.120 23 H 0.103 0.897 24 C -0.197 4.197 25 C -0.022 4.022 26 C 0.375 3.625 27 F -0.161 7.161 28 F -0.157 7.157 29 F -0.163 7.163 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.083 0.917 36 H 0.109 0.891 37 H 0.037 0.963 38 H 0.040 0.960 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.113 1.286 24.258 24.491 hybrid contribution -0.483 0.478 -0.535 0.865 sum 2.631 1.764 23.723 23.933 Atomic orbital electron populations 1.23096 0.79242 1.04012 1.01135 1.88048 1.21532 1.23049 1.93810 1.22926 0.98441 0.89936 0.88027 0.86599 1.21777 0.96242 1.06009 0.94127 1.19538 0.83834 0.77545 0.86436 1.90750 1.22474 1.49860 1.77332 1.48760 1.06295 1.69474 1.10707 1.22184 1.00337 0.99855 0.78533 1.22394 0.95284 0.99160 0.95390 0.89489 1.20690 0.95122 0.92976 0.87672 1.42366 1.69610 1.07333 1.18377 1.19199 1.30518 0.91291 0.96145 0.91245 1.24740 1.01618 0.95741 0.98796 1.69654 1.48367 1.07748 1.32305 0.86194 0.78093 0.79139 0.82789 1.21738 1.21757 1.20782 1.22231 0.95514 1.00330 0.93939 0.89736 1.21729 0.93914 1.01939 1.02156 1.22629 0.81019 1.00255 0.98300 1.21515 0.74169 0.75374 0.91446 1.93197 1.85163 1.40795 1.96970 1.93195 1.70963 1.68128 1.83394 1.93165 1.43352 1.96185 1.83576 0.88685 0.93212 0.92286 0.86437 0.86757 0.91718 0.89058 0.96335 0.96039 0.78237 0.93491 0.91725 0.92651 0.92381 0.90436 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.70 101.05 1.08 1.29 16 2 O -0.35 -4.10 9.51 -49.66 -0.47 -4.57 16 3 C 0.07 0.69 1.72 -26.73 -0.05 0.64 16 4 H 0.12 1.14 7.60 -51.93 -0.39 0.75 16 5 C -0.14 -1.35 4.10 -27.88 -0.11 -1.47 16 6 C 0.54 7.47 7.77 -10.98 -0.09 7.38 16 7 O -0.53 -9.42 15.75 -8.87 -0.14 -9.56 16 8 N -0.62 -8.22 3.29 -169.97 -0.56 -8.78 16 9 C 0.11 1.82 6.31 -2.98 -0.02 1.80 16 10 C -0.10 -1.53 2.64 -89.24 -0.24 -1.77 16 11 H 0.09 1.30 7.85 -51.93 -0.41 0.90 16 12 C 0.16 3.16 5.35 -4.04 -0.02 3.14 16 13 N -0.73 -18.30 5.33 -59.91 -0.32 -18.62 16 14 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 18 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C -0.10 -1.09 3.19 -88.92 -0.28 -1.37 16 23 H 0.08 0.94 7.87 -51.93 -0.41 0.53 16 24 C -0.14 -1.26 9.17 37.16 0.34 -0.91 16 25 C 0.10 0.96 6.39 -2.30 -0.01 0.95 16 26 C 0.43 4.09 2.85 37.16 0.11 4.19 16 27 F -0.18 -1.64 16.71 2.25 0.04 -1.61 16 28 F -0.18 -1.77 16.83 2.25 0.04 -1.73 16 29 F -0.18 -1.80 15.50 2.25 0.03 -1.77 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.41 6.49 -51.93 -0.34 0.08 16 32 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.12 0.84 7.42 -51.93 -0.39 0.45 16 34 H 0.11 0.94 7.94 -51.93 -0.41 0.53 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.83 7.49 -51.93 -0.39 1.44 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.38 10.06 7.51 -40.82 -0.31 9.76 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.50 8.11 -51.93 -0.42 0.07 16 44 H 0.08 0.54 7.23 -51.93 -0.38 0.16 16 45 H 0.08 0.64 8.02 -51.93 -0.42 0.23 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -33.42 379.16 -6.26 -39.69 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -6.76 Total: 4.77 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 0.46 Total: 6.51 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.15 Total: -54.98 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.61 Total: -14.13 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.11 Total: -5.11 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.42 -6.26 -39.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106846293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.173 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds