Wall clock time and date at job start Tue Mar 31 2020 20:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00078 * 2 1 4 4 H 1.09001 * 109.47098 * 329.99404 * 3 2 1 5 5 C 1.52997 * 109.46922 * 209.99786 * 3 2 1 6 6 C 1.50706 * 109.47267 * 65.00097 * 5 3 2 7 7 O 1.21279 * 119.99693 * 359.97438 * 6 5 3 8 8 N 1.34773 * 119.99967 * 179.97438 * 6 5 3 9 9 C 1.47485 * 127.03027 * 179.97438 * 8 6 5 10 10 C 1.54006 * 107.08438 * 154.51678 * 9 8 6 11 11 H 1.08999 * 110.32646 * 120.19795 * 10 9 8 12 12 C 1.53001 * 110.32709 * 242.31023 * 10 9 8 13 13 N 1.46502 * 109.47260 * 293.54491 * 12 10 9 14 14 C 1.36933 * 119.99807 * 179.97438 * 13 12 10 15 15 H 1.07998 * 120.00438 * 359.97438 * 14 13 12 16 16 C 1.38810 * 119.99802 * 179.97438 * 14 13 12 17 17 N 1.31625 * 120.00258 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00149 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46883 * 90.00061 * 18 16 14 20 20 H 1.48500 * 109.47154 * 210.00119 * 18 16 14 21 21 H 1.48498 * 109.46713 * 330.00122 * 18 16 14 22 22 C 1.54619 * 105.04067 * 1.30631 * 10 9 8 23 23 H 1.09004 * 110.73495 * 263.51124 * 22 10 9 24 24 C 1.52997 * 110.73774 * 140.36826 * 22 10 9 25 25 C 1.48111 * 127.03618 * 359.68047 * 8 6 5 26 26 C 1.52997 * 109.47269 * 89.99684 * 3 2 1 27 27 F 1.39905 * 109.47157 * 179.97438 * 26 3 2 28 28 F 1.39900 * 109.47010 * 60.00294 * 26 3 2 29 29 F 1.39897 * 109.47422 * 299.99986 * 26 3 2 30 30 H 1.09004 * 109.47222 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47529 * 300.00390 * 1 2 3 32 32 H 1.09000 * 109.47258 * 60.00144 * 1 2 3 33 33 H 1.09000 * 109.47278 * 184.99536 * 5 3 2 34 34 H 1.08994 * 109.47510 * 305.00045 * 5 3 2 35 35 H 1.09002 * 109.91579 * 273.87480 * 9 8 6 36 36 H 1.09001 * 109.91675 * 34.96325 * 9 8 6 37 37 H 1.09001 * 109.47068 * 53.54398 * 12 10 9 38 38 H 1.08997 * 109.46756 * 173.54221 * 12 10 9 39 39 H 0.97003 * 119.99918 * 0.02562 * 13 12 10 40 40 H 0.96996 * 120.00506 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.47133 * 59.99761 * 24 22 10 42 42 H 1.09003 * 109.47075 * 179.97438 * 24 22 10 43 43 H 1.08994 * 109.47531 * 299.99921 * 24 22 10 44 44 H 1.08995 * 110.66409 * 337.77154 * 25 8 6 45 45 H 1.09004 * 110.66177 * 100.88672 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 3.3589 1.2631 -0.7212 6 6 3.1417 0.9234 -2.1733 7 8 2.0187 0.7334 -2.5901 8 7 4.1952 0.8309 -3.0086 9 6 4.1623 0.5096 -4.4477 10 6 5.4219 1.1313 -5.0790 11 1 6.0369 0.3571 -5.5379 12 6 5.0313 2.1840 -6.1183 13 7 4.3625 1.5317 -7.2467 14 6 3.9198 2.2791 -8.3052 15 1 4.0633 3.3495 -8.3080 16 6 3.2866 1.6610 -9.3747 17 7 3.1112 0.3565 -9.3711 18 14 2.6832 2.6805 -10.8191 19 1 3.7598 2.7827 -11.8368 20 1 1.4925 2.0291 -11.4217 21 1 2.3178 4.0401 -10.3468 22 6 6.1775 1.7899 -3.9017 23 1 5.9431 2.8525 -3.8389 24 6 7.6864 1.5772 -4.0396 25 6 5.6225 1.0368 -2.6706 26 6 2.2176 1.7714 1.4425 27 9 2.7872 3.0492 1.4424 28 9 3.0715 0.8808 2.1020 29 9 0.9844 1.8100 2.1020 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 3.8427 2.2368 -0.6444 34 1 3.9931 0.5050 -0.2617 35 1 4.1721 -0.5714 -4.5871 36 1 3.2673 0.9343 -4.9025 37 1 4.3551 2.9088 -5.6648 38 1 5.9268 2.6946 -6.4724 39 1 4.2326 0.5704 -7.2437 40 1 2.6684 -0.0755 -10.1182 41 1 8.0322 2.0221 -4.9727 42 1 8.1980 2.0492 -3.2008 43 1 7.9039 0.5092 -4.0439 44 1 5.7209 1.6455 -1.7718 45 1 6.1302 0.0803 -2.5461 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106846293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:08 Heat of formation + Delta-G solvation = -245.752281 kcal Electronic energy + Delta-G solvation = -30605.987091 eV Core-core repulsion = 25821.989857 eV Total energy + Delta-G solvation = -4783.997234 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -51.19950 -48.74224 -48.64506 -41.32736 -39.70901 -38.62361 -36.44361 -34.29551 -33.52071 -33.06235 -30.73723 -28.63072 -27.54026 -27.17541 -26.74784 -25.03840 -23.48016 -22.44012 -21.02725 -20.49382 -19.77855 -19.54715 -19.19128 -19.09983 -17.85090 -17.59685 -17.12233 -16.69155 -16.58894 -16.09142 -15.67107 -15.57737 -15.44387 -15.38871 -15.27674 -15.19380 -15.09156 -14.94187 -14.80716 -14.79181 -14.15001 -13.95473 -13.72155 -13.43132 -13.30662 -13.16845 -13.09795 -12.91629 -12.78375 -12.74386 -12.49479 -12.36416 -12.15934 -11.94930 -11.83701 -11.46687 -11.35452 -11.01478 -10.98021 -10.93014 -9.72708 -9.01534 -7.96554 -5.25511 1.42620 1.45309 1.47517 1.55762 1.56772 1.92966 2.24788 2.54473 2.61207 2.82059 3.18682 3.36478 3.41937 3.55802 3.60074 3.74886 3.80284 3.94560 4.20970 4.25054 4.29479 4.31496 4.44897 4.48408 4.50845 4.58128 4.61124 4.69782 4.77920 4.81056 4.92453 4.95999 5.03713 5.12691 5.24689 5.29370 5.41052 5.47247 5.59862 5.73150 6.25660 6.54038 7.08481 7.31894 8.07818 8.30375 9.26940 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.002665 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.303124 B =10503.305175 C =11621.164569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.367 6.367 3 C 0.064 3.936 4 H 0.113 0.887 5 C -0.131 4.131 6 C 0.531 3.469 7 O -0.579 6.579 8 N -0.619 5.619 9 C 0.118 3.882 10 C -0.094 4.094 11 H 0.087 0.913 12 C 0.164 3.836 13 N -0.746 5.746 14 C -0.246 4.246 15 H 0.074 0.926 16 C -0.076 4.076 17 N -0.969 5.969 18 Si 0.973 3.027 19 H -0.283 1.283 20 H -0.296 1.296 21 H -0.271 1.271 22 C -0.091 4.091 23 H 0.085 0.915 24 C -0.135 4.135 25 C 0.101 3.899 26 C 0.439 3.561 27 F -0.175 7.175 28 F -0.176 7.176 29 F -0.185 7.185 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.150 0.850 34 H 0.136 0.864 35 H 0.057 0.943 36 H 0.042 0.958 37 H 0.009 0.991 38 H 0.029 0.971 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.051 0.949 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.117 0.883 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.682 2.579 26.552 27.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.285 6.285 3 C 0.002 3.998 4 H 0.131 0.869 5 C -0.170 4.170 6 C 0.320 3.680 7 O -0.459 6.459 8 N -0.352 5.352 9 C -0.006 4.006 10 C -0.113 4.113 11 H 0.105 0.895 12 C 0.037 3.963 13 N -0.388 5.388 14 C -0.378 4.378 15 H 0.092 0.908 16 C -0.268 4.268 17 N -0.620 5.620 18 Si 0.802 3.198 19 H -0.210 1.210 20 H -0.223 1.223 21 H -0.196 1.196 22 C -0.111 4.111 23 H 0.103 0.897 24 C -0.193 4.193 25 C -0.020 4.020 26 C 0.385 3.615 27 F -0.156 7.156 28 F -0.158 7.158 29 F -0.166 7.166 30 H 0.122 0.878 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.168 0.832 34 H 0.154 0.846 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.027 0.973 38 H 0.047 0.953 39 H 0.206 0.794 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.136 0.864 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.089 2.482 26.356 26.958 hybrid contribution -1.076 0.144 -1.137 1.572 sum 4.012 2.626 25.219 25.671 Atomic orbital electron populations 1.23167 0.78600 1.04721 1.01135 1.88006 1.22393 1.24128 1.93955 1.23010 0.98799 0.89395 0.88557 0.86877 1.21830 0.96456 1.08313 0.90451 1.20369 0.83084 0.76439 0.88060 1.90729 1.24591 1.52047 1.78542 1.48865 1.08205 1.68900 1.09218 1.21876 0.98810 0.99092 0.80773 1.22271 0.95187 0.98117 0.95725 0.89457 1.20827 0.94329 0.93950 0.87151 1.42594 1.69989 1.06919 1.19325 1.19617 1.29586 0.91794 0.96830 0.90777 1.25582 1.02621 0.96879 1.01730 1.69815 1.49741 1.09386 1.33014 0.85144 0.77252 0.77937 0.79460 1.21011 1.22289 1.19579 1.22230 0.96493 1.00107 0.92260 0.89672 1.21707 0.92155 1.02649 1.02744 1.22932 0.78234 1.01835 0.98965 1.21275 0.74021 0.75424 0.90830 1.93209 1.85041 1.40441 1.96923 1.93195 1.70954 1.68239 1.83383 1.93159 1.43661 1.96205 1.83574 0.87762 0.91836 0.93580 0.83233 0.84613 0.92461 0.93945 0.97344 0.95281 0.79446 0.94003 0.92976 0.89827 0.91732 0.86445 0.88723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.70 113.37 1.21 1.59 16 2 O -0.37 -8.43 9.51 -135.18 -1.29 -9.71 16 3 C 0.06 1.20 1.72 30.59 0.05 1.25 16 4 H 0.11 2.18 7.60 -2.39 -0.02 2.16 16 5 C -0.13 -2.15 4.10 29.85 0.12 -2.03 16 6 C 0.53 14.30 7.77 87.66 0.68 14.98 16 7 O -0.58 -21.39 15.75 10.77 0.17 -21.22 16 8 N -0.62 -15.74 3.29 -810.04 -2.67 -18.41 16 9 C 0.12 3.91 6.31 86.53 0.55 4.46 16 10 C -0.09 -2.76 2.64 -9.90 -0.03 -2.78 16 11 H 0.09 2.59 7.85 -2.39 -0.02 2.57 16 12 C 0.16 6.43 5.35 86.38 0.46 6.89 16 13 N -0.75 -38.41 5.33 -343.45 -1.83 -40.24 16 14 C -0.25 -14.05 9.99 84.03 0.84 -13.22 16 15 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 16 C -0.08 -4.45 5.50 84.86 0.47 -3.98 16 17 N -0.97 -60.53 13.06 21.65 0.28 -60.25 16 18 Si 0.97 47.02 29.55 68.60 2.03 49.05 16 19 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 20 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 C -0.09 -1.73 3.19 -9.69 -0.03 -1.76 16 23 H 0.08 1.65 7.87 -2.38 -0.02 1.63 16 24 C -0.14 -1.95 9.17 71.98 0.66 -1.29 16 25 C 0.10 1.56 6.39 86.62 0.55 2.11 16 26 C 0.44 7.39 2.85 71.98 0.21 7.60 16 27 F -0.17 -2.71 16.71 44.97 0.75 -1.96 16 28 F -0.18 -3.10 16.83 44.97 0.76 -2.34 16 29 F -0.18 -3.37 15.50 44.97 0.70 -2.68 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 1.02 6.49 -2.39 -0.02 1.00 16 32 H 0.05 0.99 8.08 -2.39 -0.02 0.97 16 33 H 0.15 1.48 7.42 -2.39 -0.02 1.47 16 34 H 0.14 1.70 7.94 -2.39 -0.02 1.68 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.04 1.82 7.49 -2.39 -0.02 1.80 16 37 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.37 20.49 7.51 -92.71 -0.70 19.79 16 40 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.06 0.87 8.11 -2.39 -0.02 0.85 16 44 H 0.12 0.95 7.23 -2.39 -0.02 0.94 16 45 H 0.09 1.18 8.02 -2.38 -0.02 1.17 16 Total: -1.00 -75.71 379.16 4.96 -70.76 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.31 Total: 23.19 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 5.75 Total: 13.82 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -4.22 Total: -118.90 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.12 Total: -30.94 kcal Atomic # 9 Polarization: -9.18 SS G_CDS: 2.21 Total: -6.98 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -75.71 4.96 -70.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106846293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.996 kcal (2) G-P(sol) polarization free energy of solvation -75.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds