Wall clock time and date at job start Tue Mar 31 2020 20:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 114.00109 * 2 1 4 4 H 1.09000 * 109.46778 * 30.00777 * 3 2 1 5 5 C 1.52996 * 109.46797 * 150.00239 * 3 2 1 6 6 C 1.50702 * 109.47159 * 295.00080 * 5 3 2 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 3 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 5 3 9 9 C 1.47487 * 127.03512 * 180.27513 * 8 6 5 10 10 C 1.54002 * 107.08545 * 154.52018 * 9 8 6 11 11 H 1.09001 * 110.32996 * 120.19805 * 10 9 8 12 12 C 1.53006 * 110.32728 * 242.31314 * 10 9 8 13 13 N 1.46494 * 109.46906 * 293.54602 * 12 10 9 14 14 C 1.36938 * 119.99720 * 179.97438 * 13 12 10 15 15 H 1.07995 * 120.00170 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99806 * 179.97438 * 14 13 12 17 17 N 1.31620 * 120.00108 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99901 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47188 * 60.00034 * 18 16 14 20 20 H 1.48505 * 109.47290 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47671 * 300.00104 * 18 16 14 22 22 C 1.54618 * 105.04402 * 1.30480 * 10 9 8 23 23 H 1.08996 * 110.74244 * 263.51074 * 22 10 9 24 24 C 1.53000 * 110.73695 * 140.36536 * 22 10 9 25 25 C 1.48122 * 127.03502 * 359.96635 * 8 6 5 26 26 C 1.52997 * 109.47563 * 270.00333 * 3 2 1 27 27 F 1.39898 * 109.46911 * 300.00425 * 26 3 2 28 28 F 1.39901 * 109.46903 * 59.99704 * 26 3 2 29 29 F 1.39897 * 109.47309 * 179.97438 * 26 3 2 30 30 H 1.09000 * 109.47059 * 59.99740 * 1 2 3 31 31 H 1.09001 * 109.46971 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46614 * 299.99244 * 1 2 3 33 33 H 1.09004 * 109.47066 * 175.00283 * 5 3 2 34 34 H 1.08994 * 109.47405 * 55.00114 * 5 3 2 35 35 H 1.09001 * 109.91358 * 273.88464 * 9 8 6 36 36 H 1.09001 * 109.91316 * 35.15643 * 9 8 6 37 37 H 1.09000 * 109.46609 * 53.54757 * 12 10 9 38 38 H 1.08998 * 109.47068 * 173.54526 * 12 10 9 39 39 H 0.97004 * 120.00179 * 0.02562 * 13 12 10 40 40 H 0.96998 * 120.00105 * 180.02562 * 17 16 14 41 41 H 1.08996 * 109.47286 * 60.00582 * 24 22 10 42 42 H 1.09005 * 109.47101 * 180.02562 * 24 22 10 43 43 H 1.09002 * 109.47344 * 300.00323 * 24 22 10 44 44 H 1.09004 * 110.65797 * 337.76678 * 25 8 6 45 45 H 1.09002 * 110.66353 * 100.88140 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5140 5 6 3.3590 1.2631 0.7212 6 6 3.1417 0.9234 2.1733 7 8 2.0188 0.7333 2.5902 8 7 4.1958 0.8248 3.0073 9 6 4.1634 0.4975 4.4450 10 6 5.5299 -0.1178 4.7999 11 1 6.0266 0.4787 5.5651 12 6 5.3546 -1.5594 5.2817 13 7 4.6299 -1.5640 6.5549 14 6 4.3540 -2.7500 7.1813 15 1 4.6703 -3.6820 6.7367 16 6 3.6678 -2.7544 8.3880 17 7 3.2827 -1.6185 8.9302 18 14 3.2909 -4.3722 9.2423 19 1 4.5612 -5.0775 9.5494 20 1 2.5554 -4.1059 10.5046 21 1 2.4570 -5.2195 8.3523 22 6 6.3394 -0.0841 3.4830 23 1 6.2795 -1.0430 2.9684 24 6 7.7973 0.2936 3.7528 25 6 5.6244 1.0167 2.6661 26 6 2.2177 1.7715 -1.4424 27 9 3.0715 0.8808 -2.1020 28 9 0.9845 1.8100 -2.1019 29 9 2.7862 3.0497 -1.4424 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5137 0.8900 33 1 3.8428 2.2368 0.6443 34 1 3.9931 0.5050 0.2617 35 1 4.0016 1.4039 5.0285 36 1 3.3692 -0.2220 4.6442 37 1 4.7897 -2.1242 4.5400 38 1 6.3337 -2.0181 5.4193 39 1 4.3448 -0.7270 6.9537 40 1 2.8036 -1.6215 9.7736 41 1 8.2450 -0.4408 4.4222 42 1 8.3480 0.3117 2.8123 43 1 7.8375 1.2795 4.2160 44 1 5.7879 0.8697 1.5985 45 1 5.9645 2.0049 2.9759 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106846294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:13 Heat of formation + Delta-G solvation = -223.545151 kcal Electronic energy + Delta-G solvation = -30646.785429 eV Core-core repulsion = 25863.751169 eV Total energy + Delta-G solvation = -4783.034260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.45300 -47.99769 -47.89773 -40.26363 -38.74171 -37.56043 -34.64653 -33.08099 -32.59339 -31.40718 -29.27364 -27.57259 -26.74000 -26.34472 -25.23726 -23.34223 -22.54221 -21.17111 -19.93758 -19.45111 -19.02615 -18.64353 -18.40553 -17.23129 -16.92036 -16.47444 -16.16097 -15.62143 -15.11845 -14.89841 -14.76149 -14.65475 -14.61961 -14.37552 -14.19762 -14.13563 -14.05485 -14.02359 -13.56199 -13.31543 -13.06134 -12.84429 -12.63645 -12.49822 -12.38533 -12.15677 -11.92426 -11.76946 -11.55665 -11.44027 -11.08139 -10.85527 -10.62097 -10.50731 -10.33169 -10.16434 -10.00035 -9.86181 -9.64504 -8.86163 -8.60648 -6.91212 -5.74524 -3.03413 2.22856 2.60064 2.88726 3.03654 3.37996 3.46151 3.50393 3.51436 3.59562 3.94350 4.28296 4.41805 4.50819 4.57995 4.61942 4.80935 4.95825 4.96758 5.04994 5.18282 5.27549 5.32499 5.35252 5.45667 5.50820 5.55936 5.59984 5.70776 5.76963 5.97263 6.07157 6.14151 6.18426 6.25980 6.41839 6.46359 6.53802 6.72513 6.86964 7.56276 7.71476 8.14517 8.44114 9.55320 10.12028 10.46597 11.48249 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.014597 B = 0.002721 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.740701 B =10288.817329 C =11576.023725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.346 6.346 3 C 0.068 3.932 4 H 0.115 0.885 5 C -0.142 4.142 6 C 0.539 3.461 7 O -0.528 6.528 8 N -0.618 5.618 9 C 0.112 3.888 10 C -0.103 4.103 11 H 0.087 0.913 12 C 0.163 3.837 13 N -0.732 5.732 14 C -0.240 4.240 15 H 0.069 0.931 16 C -0.013 4.013 17 N -0.933 5.933 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.101 4.101 23 H 0.085 0.915 24 C -0.139 4.139 25 C 0.101 3.899 26 C 0.429 3.571 27 F -0.175 7.175 28 F -0.181 7.181 29 F -0.181 7.181 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.019 0.981 38 H 0.022 0.978 39 H 0.384 0.616 40 H 0.256 0.744 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.057 0.943 44 H 0.077 0.923 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.940 10.904 -22.356 25.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.263 6.263 3 C 0.007 3.993 4 H 0.133 0.867 5 C -0.182 4.182 6 C 0.326 3.674 7 O -0.404 6.404 8 N -0.352 5.352 9 C -0.009 4.009 10 C -0.122 4.122 11 H 0.105 0.895 12 C 0.035 3.965 13 N -0.377 5.377 14 C -0.372 4.372 15 H 0.087 0.913 16 C -0.209 4.209 17 N -0.582 5.582 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.120 4.120 23 H 0.103 0.897 24 C -0.197 4.197 25 C -0.022 4.022 26 C 0.375 3.625 27 F -0.156 7.156 28 F -0.163 7.163 29 F -0.162 7.162 30 H 0.068 0.932 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.037 0.963 38 H 0.040 0.960 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.319 10.469 -22.173 24.630 hybrid contribution -0.419 -0.319 0.343 0.629 sum 1.900 10.150 -21.830 24.149 Atomic orbital electron populations 1.23097 0.79233 1.04113 1.01011 1.88075 1.21532 1.22913 1.93769 1.22918 0.98404 0.90001 0.87995 0.86687 1.21778 0.96282 1.05957 0.94158 1.19543 0.83884 0.77575 0.86360 1.90750 1.22522 1.49797 1.77342 1.48767 1.06280 1.69252 1.10941 1.22191 0.99320 1.00467 0.78952 1.22393 0.94183 0.99157 0.96478 0.89511 1.20695 0.95247 0.91556 0.88998 1.42353 1.67309 1.06755 1.21244 1.19164 1.29863 0.86253 1.01882 0.91287 1.24733 1.01220 0.96842 0.98084 1.69644 1.44287 1.24195 1.20038 0.86268 0.77906 0.83127 0.78877 1.21299 1.21689 1.21257 1.22227 0.94935 0.98817 0.96055 0.89704 1.21729 0.94516 1.01916 1.01556 1.22630 0.80377 0.99285 0.99939 1.21526 0.74173 0.75334 0.91493 1.93199 1.70951 1.68087 1.83374 1.93166 1.43357 1.96184 1.83584 1.93188 1.85237 1.40804 1.96980 0.93245 0.88610 0.92345 0.86513 0.86683 0.91720 0.89027 0.96270 0.96041 0.78260 0.93462 0.91719 0.92654 0.92411 0.90409 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.70 101.05 1.08 1.30 16 2 O -0.35 -4.24 9.51 -49.66 -0.47 -4.71 16 3 C 0.07 0.69 1.72 -26.73 -0.05 0.65 16 4 H 0.12 1.09 7.60 -51.93 -0.39 0.70 16 5 C -0.14 -1.35 4.10 -27.88 -0.11 -1.47 16 6 C 0.54 7.47 7.77 -10.98 -0.09 7.38 16 7 O -0.53 -9.42 15.76 -8.87 -0.14 -9.56 16 8 N -0.62 -8.23 3.29 -169.97 -0.56 -8.79 16 9 C 0.11 1.81 6.31 -2.98 -0.02 1.79 16 10 C -0.10 -1.54 2.64 -89.24 -0.24 -1.78 16 11 H 0.09 1.30 7.85 -51.93 -0.41 0.89 16 12 C 0.16 3.20 5.35 -4.04 -0.02 3.17 16 13 N -0.73 -18.42 5.33 -59.91 -0.32 -18.74 16 14 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 18 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 C -0.10 -1.11 3.19 -88.93 -0.28 -1.40 16 23 H 0.08 0.99 7.87 -51.93 -0.41 0.58 16 24 C -0.14 -1.27 9.17 37.16 0.34 -0.93 16 25 C 0.10 0.96 6.39 -2.31 -0.01 0.95 16 26 C 0.43 4.07 2.85 37.16 0.11 4.18 16 27 F -0.17 -1.80 16.83 2.25 0.04 -1.76 16 28 F -0.18 -1.80 15.50 2.25 0.03 -1.77 16 29 F -0.18 -1.60 16.71 2.25 0.04 -1.57 16 30 H 0.05 0.42 6.49 -51.93 -0.34 0.08 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.12 0.79 7.67 -51.93 -0.40 0.39 16 34 H 0.11 0.99 7.70 -51.93 -0.40 0.59 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.85 7.48 -51.93 -0.39 1.47 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.38 10.09 7.51 -40.82 -0.31 9.79 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.49 8.11 -51.93 -0.42 0.07 16 44 H 0.08 0.56 7.23 -51.93 -0.38 0.18 16 45 H 0.08 0.62 8.02 -51.93 -0.42 0.20 16 LS Contribution 379.15 15.07 5.71 5.71 Total: -1.00 -33.62 379.15 -6.26 -39.88 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.76 Total: 4.87 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 0.46 Total: 6.44 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.15 Total: -55.19 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.61 Total: -14.27 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.11 Total: -5.09 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.62 -6.26 -39.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106846294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.670 kcal (2) G-P(sol) polarization free energy of solvation -33.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds