Wall clock time and date at job start Tue Mar 31 2020 20:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 114.00109 * 2 1 4 4 H 1.09000 * 109.46778 * 30.00777 * 3 2 1 5 5 C 1.52996 * 109.46797 * 150.00239 * 3 2 1 6 6 C 1.50702 * 109.47159 * 295.00080 * 5 3 2 7 7 O 1.21283 * 120.00262 * 0.02562 * 6 5 3 8 8 N 1.34777 * 119.99928 * 179.72352 * 6 5 3 9 9 C 1.47487 * 127.03512 * 180.27513 * 8 6 5 10 10 C 1.54002 * 107.08545 * 154.52018 * 9 8 6 11 11 H 1.09001 * 110.32996 * 120.19805 * 10 9 8 12 12 C 1.53006 * 110.32728 * 242.31314 * 10 9 8 13 13 N 1.46494 * 109.46906 * 293.54602 * 12 10 9 14 14 C 1.36938 * 119.99720 * 179.97438 * 13 12 10 15 15 H 1.07995 * 120.00170 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99806 * 179.97438 * 14 13 12 17 17 N 1.31620 * 120.00108 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99901 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47188 * 60.00034 * 18 16 14 20 20 H 1.48505 * 109.47290 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47671 * 300.00104 * 18 16 14 22 22 C 1.54618 * 105.04402 * 1.30480 * 10 9 8 23 23 H 1.08996 * 110.74244 * 263.51074 * 22 10 9 24 24 C 1.53000 * 110.73695 * 140.36536 * 22 10 9 25 25 C 1.48122 * 127.03502 * 359.96635 * 8 6 5 26 26 C 1.52997 * 109.47563 * 270.00333 * 3 2 1 27 27 F 1.39898 * 109.46911 * 300.00425 * 26 3 2 28 28 F 1.39901 * 109.46903 * 59.99704 * 26 3 2 29 29 F 1.39897 * 109.47309 * 179.97438 * 26 3 2 30 30 H 1.09000 * 109.47059 * 59.99740 * 1 2 3 31 31 H 1.09001 * 109.46971 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46614 * 299.99244 * 1 2 3 33 33 H 1.09004 * 109.47066 * 175.00283 * 5 3 2 34 34 H 1.08994 * 109.47405 * 55.00114 * 5 3 2 35 35 H 1.09001 * 109.91358 * 273.88464 * 9 8 6 36 36 H 1.09001 * 109.91316 * 35.15643 * 9 8 6 37 37 H 1.09000 * 109.46609 * 53.54757 * 12 10 9 38 38 H 1.08998 * 109.47068 * 173.54526 * 12 10 9 39 39 H 0.97004 * 120.00179 * 0.02562 * 13 12 10 40 40 H 0.96998 * 120.00105 * 180.02562 * 17 16 14 41 41 H 1.08996 * 109.47286 * 60.00582 * 24 22 10 42 42 H 1.09005 * 109.47101 * 180.02562 * 24 22 10 43 43 H 1.09002 * 109.47344 * 300.00323 * 24 22 10 44 44 H 1.09004 * 110.65797 * 337.76678 * 25 8 6 45 45 H 1.09002 * 110.66353 * 100.88140 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5140 5 6 3.3590 1.2631 0.7212 6 6 3.1417 0.9234 2.1733 7 8 2.0188 0.7333 2.5902 8 7 4.1958 0.8248 3.0073 9 6 4.1634 0.4975 4.4450 10 6 5.5299 -0.1178 4.7999 11 1 6.0266 0.4787 5.5651 12 6 5.3546 -1.5594 5.2817 13 7 4.6299 -1.5640 6.5549 14 6 4.3540 -2.7500 7.1813 15 1 4.6703 -3.6820 6.7367 16 6 3.6678 -2.7544 8.3880 17 7 3.2827 -1.6185 8.9302 18 14 3.2909 -4.3722 9.2423 19 1 4.5612 -5.0775 9.5494 20 1 2.5554 -4.1059 10.5046 21 1 2.4570 -5.2195 8.3523 22 6 6.3394 -0.0841 3.4830 23 1 6.2795 -1.0430 2.9684 24 6 7.7973 0.2936 3.7528 25 6 5.6244 1.0167 2.6661 26 6 2.2177 1.7715 -1.4424 27 9 3.0715 0.8808 -2.1020 28 9 0.9845 1.8100 -2.1019 29 9 2.7862 3.0497 -1.4424 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5137 0.8900 33 1 3.8428 2.2368 0.6443 34 1 3.9931 0.5050 0.2617 35 1 4.0016 1.4039 5.0285 36 1 3.3692 -0.2220 4.6442 37 1 4.7897 -2.1242 4.5400 38 1 6.3337 -2.0181 5.4193 39 1 4.3448 -0.7270 6.9537 40 1 2.8036 -1.6215 9.7736 41 1 8.2450 -0.4408 4.4222 42 1 8.3480 0.3117 2.8123 43 1 7.8375 1.2795 4.2160 44 1 5.7879 0.8697 1.5985 45 1 5.9645 2.0049 2.9759 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106846294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:12 Heat of formation + Delta-G solvation = -245.664389 kcal Electronic energy + Delta-G solvation = -30647.744591 eV Core-core repulsion = 25863.751169 eV Total energy + Delta-G solvation = -4783.993422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -51.19656 -48.73570 -48.64575 -41.32438 -39.70803 -38.62459 -36.44590 -34.29562 -33.51894 -33.06595 -30.73672 -28.62864 -27.54382 -27.17377 -26.74804 -25.03881 -23.47790 -22.44096 -21.03387 -20.49000 -19.77960 -19.54040 -19.18261 -19.10889 -17.90362 -17.47799 -17.19100 -16.69336 -16.59437 -16.02707 -15.78173 -15.52425 -15.41961 -15.36427 -15.34264 -15.18272 -15.08862 -14.91845 -14.80901 -14.76155 -14.21599 -13.96287 -13.69812 -13.35793 -13.30050 -13.19937 -13.12644 -12.92669 -12.76551 -12.72884 -12.49938 -12.35473 -12.20298 -11.94934 -11.83094 -11.46808 -11.35853 -11.01409 -10.97527 -10.92796 -9.72356 -9.01920 -7.96761 -5.25676 1.42787 1.44949 1.48548 1.54499 1.56679 1.93672 2.25874 2.54436 2.61588 2.82360 3.19403 3.35969 3.41418 3.56395 3.60295 3.76422 3.78397 3.95034 4.20751 4.26752 4.28996 4.30811 4.44285 4.48284 4.49625 4.57933 4.61705 4.69516 4.77848 4.80965 4.92082 4.95816 5.03573 5.12895 5.24422 5.29112 5.40875 5.46603 5.59737 5.74394 6.25451 6.54252 7.08777 7.31731 8.07370 8.30475 9.26511 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.014597 B = 0.002721 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.740701 B =10288.817329 C =11576.023725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.370 6.370 3 C 0.063 3.937 4 H 0.117 0.883 5 C -0.131 4.131 6 C 0.531 3.469 7 O -0.579 6.579 8 N -0.619 5.619 9 C 0.118 3.882 10 C -0.093 4.093 11 H 0.090 0.910 12 C 0.164 3.836 13 N -0.745 5.745 14 C -0.249 4.249 15 H 0.073 0.927 16 C -0.075 4.075 17 N -0.968 5.968 18 Si 0.973 3.027 19 H -0.274 1.274 20 H -0.294 1.294 21 H -0.281 1.281 22 C -0.093 4.093 23 H 0.080 0.920 24 C -0.134 4.134 25 C 0.102 3.898 26 C 0.439 3.561 27 F -0.177 7.177 28 F -0.185 7.185 29 F -0.174 7.174 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.047 0.953 33 H 0.154 0.846 34 H 0.132 0.868 35 H 0.062 0.938 36 H 0.039 0.961 37 H 0.005 0.995 38 H 0.028 0.972 39 H 0.374 0.626 40 H 0.252 0.748 41 H 0.050 0.950 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.115 0.885 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.910 11.530 -24.434 27.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.287 6.287 3 C 0.002 3.998 4 H 0.135 0.865 5 C -0.171 4.171 6 C 0.320 3.680 7 O -0.459 6.459 8 N -0.352 5.352 9 C -0.006 4.006 10 C -0.113 4.113 11 H 0.108 0.892 12 C 0.037 3.963 13 N -0.387 5.387 14 C -0.381 4.381 15 H 0.091 0.909 16 C -0.267 4.267 17 N -0.619 5.619 18 Si 0.802 3.198 19 H -0.200 1.200 20 H -0.220 1.220 21 H -0.208 1.208 22 C -0.113 4.113 23 H 0.098 0.902 24 C -0.192 4.192 25 C -0.019 4.019 26 C 0.384 3.616 27 F -0.159 7.159 28 F -0.166 7.166 29 F -0.155 7.155 30 H 0.083 0.917 31 H 0.119 0.881 32 H 0.066 0.934 33 H 0.171 0.829 34 H 0.150 0.850 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.023 0.977 38 H 0.046 0.954 39 H 0.206 0.794 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.133 0.867 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.350 11.091 -24.303 27.066 hybrid contribution -1.027 -0.516 0.948 1.490 sum 3.323 10.574 -23.355 25.852 Atomic orbital electron populations 1.23160 0.78599 1.04604 1.01220 1.88027 1.22426 1.24331 1.93954 1.23032 0.98808 0.89358 0.88579 0.86523 1.21836 0.96453 1.08351 0.90426 1.20372 0.83146 0.76480 0.87968 1.90729 1.24646 1.51994 1.78536 1.48873 1.08186 1.68656 1.09493 1.21889 0.98231 0.99036 0.81417 1.22274 0.94457 0.95726 0.98830 0.89219 1.20819 0.94202 0.94839 0.86418 1.42568 1.67795 1.05533 1.22839 1.19582 1.29049 0.87430 1.02022 0.90917 1.25574 1.01796 1.00197 0.99122 1.69804 1.45490 1.26268 1.20311 0.85217 0.77950 0.79216 0.77415 1.20010 1.21971 1.20755 1.22227 0.95942 0.99604 0.93481 0.90156 1.21704 0.92754 1.01905 1.02819 1.22936 0.77310 0.99769 1.01913 1.21278 0.74004 0.75429 0.90839 1.93196 1.71006 1.68289 1.83403 1.93160 1.43664 1.96207 1.83582 1.93205 1.85081 1.40292 1.96921 0.91682 0.88124 0.93405 0.82868 0.85017 0.91959 0.94186 0.97685 0.95364 0.79380 0.93956 0.93057 0.89905 0.91477 0.86725 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.70 113.37 1.21 1.61 16 2 O -0.37 -8.88 9.51 -135.18 -1.29 -10.16 16 3 C 0.06 1.19 1.72 30.59 0.05 1.24 16 4 H 0.12 2.14 7.60 -2.39 -0.02 2.12 16 5 C -0.13 -2.16 4.10 29.85 0.12 -2.03 16 6 C 0.53 14.29 7.77 87.66 0.68 14.97 16 7 O -0.58 -21.38 15.76 10.76 0.17 -21.21 16 8 N -0.62 -15.73 3.29 -810.05 -2.67 -18.40 16 9 C 0.12 3.90 6.31 86.53 0.55 4.44 16 10 C -0.09 -2.78 2.64 -9.90 -0.03 -2.81 16 11 H 0.09 2.64 7.85 -2.39 -0.02 2.62 16 12 C 0.16 6.56 5.35 86.38 0.46 7.02 16 13 N -0.74 -38.73 5.33 -343.46 -1.83 -40.56 16 14 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 15 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 16 C -0.07 -4.40 5.50 84.86 0.47 -3.93 16 17 N -0.97 -60.55 13.06 21.65 0.28 -60.27 16 18 Si 0.97 47.27 29.55 68.60 2.03 49.30 16 19 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 22 C -0.09 -1.82 3.19 -9.70 -0.03 -1.85 16 23 H 0.08 1.68 7.87 -2.39 -0.02 1.66 16 24 C -0.13 -1.97 9.17 71.98 0.66 -1.31 16 25 C 0.10 1.56 6.39 86.61 0.55 2.12 16 26 C 0.44 7.35 2.85 71.98 0.21 7.56 16 27 F -0.18 -3.21 16.83 44.97 0.76 -2.45 16 28 F -0.18 -3.36 15.50 44.97 0.70 -2.66 16 29 F -0.17 -2.57 16.71 44.97 0.75 -1.82 16 30 H 0.06 1.07 6.49 -2.39 -0.02 1.05 16 31 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.05 1.04 8.08 -2.39 -0.02 1.02 16 33 H 0.15 1.38 7.67 -2.38 -0.02 1.37 16 34 H 0.13 1.77 7.70 -2.39 -0.02 1.76 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.04 1.73 7.48 -2.39 -0.02 1.72 16 37 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.37 20.58 7.51 -92.71 -0.70 19.88 16 40 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.07 0.88 8.11 -2.39 -0.02 0.86 16 44 H 0.11 1.00 7.23 -2.38 -0.02 0.99 16 45 H 0.10 1.14 8.02 -2.39 -0.02 1.12 16 Total: -1.00 -76.31 379.15 4.96 -71.35 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.31 Total: 23.35 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 5.75 Total: 13.53 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -4.22 Total: -119.23 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -1.12 Total: -31.37 kcal Atomic # 9 Polarization: -9.14 SS G_CDS: 2.21 Total: -6.94 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.30 kcal Total: -76.31 4.96 -71.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106846294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.315 kcal (2) G-P(sol) polarization free energy of solvation -76.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds