Wall clock time and date at job start Tue Mar 31 2020 21:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50697 * 120.00152 * 2 1 4 4 N 1.46507 * 109.46938 * 126.07498 * 3 2 1 5 5 C 1.36732 * 127.13664 * 95.33533 * 4 3 2 6 6 C 1.50700 * 126.34378 * 359.97438 * 5 4 3 7 7 C 1.53005 * 109.46903 * 269.71050 * 6 5 4 8 8 H 1.08999 * 109.46912 * 55.00567 * 7 6 5 9 9 O 1.42899 * 109.47294 * 295.00081 * 7 6 5 10 10 C 1.50706 * 109.47098 * 175.00301 * 7 6 5 11 11 H 1.08005 * 119.99862 * 0.02562 * 10 7 6 12 12 C 1.37868 * 119.99905 * 180.02562 * 10 7 6 13 13 N 1.31515 * 120.00204 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99930 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.46951 * 60.00327 * 14 12 10 16 16 H 1.48500 * 109.47156 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47168 * 300.00081 * 14 12 10 18 18 N 1.30293 * 107.30604 * 179.73197 * 5 4 3 19 19 N 1.28522 * 110.05428 * 0.26245 * 18 5 4 20 20 C 1.31222 * 109.85960 * 359.97438 * 19 18 5 21 21 N 1.38586 * 126.47107 * 179.97438 * 20 19 18 22 22 C 1.46468 * 111.00309 * 296.59059 * 21 20 19 23 23 C 1.53244 * 109.85836 * 197.76303 * 22 21 20 24 24 S 1.81895 * 108.51099 * 297.99791 * 23 22 21 25 25 C 1.81905 * 101.91264 * 51.30768 * 24 23 22 26 26 C 1.46471 * 110.99674 * 62.57392 * 21 20 19 27 27 H 1.09001 * 109.40913 * 282.35010 * 26 21 20 28 28 C 1.52999 * 109.41029 * 42.11311 * 26 21 20 29 29 H 1.08001 * 120.00182 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99681 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.99681 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47300 * 6.07729 * 3 2 1 33 33 H 1.09001 * 109.47519 * 246.07719 * 3 2 1 34 34 H 1.09008 * 109.47232 * 149.71723 * 6 5 4 35 35 H 1.09000 * 109.47619 * 29.71106 * 6 5 4 36 36 H 0.96704 * 114.00030 * 300.00468 * 9 7 6 37 37 H 0.97004 * 119.99982 * 180.02562 * 13 12 10 38 38 H 1.08994 * 109.40604 * 317.88573 * 22 21 20 39 39 H 1.08999 * 109.39964 * 77.64804 * 22 21 20 40 40 H 1.09003 * 109.63150 * 57.70504 * 23 22 21 41 41 H 1.09000 * 109.63368 * 178.28739 * 23 22 21 42 42 H 1.09000 * 109.63095 * 68.39734 * 25 24 23 43 43 H 1.09002 * 109.63063 * 188.79537 * 25 24 23 44 44 H 1.09006 * 109.46977 * 59.07314 * 28 26 21 45 45 H 1.08997 * 109.47611 * 179.07921 * 28 26 21 46 46 H 1.09005 * 109.47086 * 299.08121 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0121 1.3212 1.1164 5 6 4.3368 0.9844 1.0791 6 6 5.1066 0.5207 -0.1306 7 6 5.0341 -1.0046 -0.2273 8 1 3.9905 -1.3193 -0.2294 9 8 5.7046 -1.5854 0.8930 10 6 5.6985 -1.4593 -1.5013 11 1 6.1297 -0.7330 -2.1744 12 6 5.7558 -2.8023 -1.8075 13 7 5.2311 -3.6867 -0.9876 14 14 6.5786 -3.3659 -3.3870 15 1 8.0005 -2.9376 -3.3845 16 1 6.5084 -4.8463 -3.4808 17 1 5.8817 -2.7620 -4.5510 18 7 4.8113 1.1438 2.2820 19 7 3.8824 1.5499 3.0720 20 6 2.7562 1.6730 2.4097 21 7 1.5382 2.0865 2.9255 22 6 1.0503 1.1465 3.9374 23 6 -0.4493 1.3617 4.1677 24 16 -0.7006 3.0500 4.7964 25 6 0.2110 4.0446 3.5763 26 6 1.6199 3.4601 3.4274 27 1 2.1173 3.4624 4.3973 28 6 2.4231 4.3138 2.4441 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3603 2.1307 0.1088 33 1 2.6062 1.4114 -0.9394 34 1 6.1480 0.8298 -0.0391 35 1 4.6739 0.9626 -1.0281 36 1 6.6397 -1.3477 0.9583 37 1 5.2718 -4.6317 -1.2029 38 1 1.2215 0.1257 3.5959 39 1 1.5873 1.3096 4.8718 40 1 -0.9858 1.2376 3.2270 41 1 -0.8148 0.6406 4.8988 42 1 -0.3038 4.0084 2.6162 43 1 0.2742 5.0773 3.9194 44 1 1.9382 4.2968 1.4680 45 1 2.4707 5.3400 2.8084 46 1 3.4327 3.9126 2.3552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121629496.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:58 Heat of formation + Delta-G solvation = 61.684230 kcal Electronic energy + Delta-G solvation = -28573.121451 eV Core-core repulsion = 24819.358027 eV Total energy + Delta-G solvation = -3753.763424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.71395 -38.77266 -36.23047 -35.79066 -33.23167 -32.62056 -32.21922 -31.86943 -30.07693 -27.71645 -27.47199 -26.62901 -25.29084 -23.16732 -22.38354 -21.72498 -20.71813 -19.91163 -19.51943 -17.56257 -17.00405 -16.89177 -16.50439 -15.92605 -15.42643 -14.96641 -14.69758 -14.55741 -14.39348 -14.07302 -13.88787 -13.71677 -13.59847 -13.20277 -12.92358 -12.85637 -12.71610 -12.53731 -12.26968 -12.21937 -11.59202 -11.47613 -11.31912 -11.21297 -11.12250 -11.07443 -10.89781 -10.83594 -10.31667 -10.11264 -9.99963 -9.84971 -9.54111 -9.32096 -8.90951 -8.68518 -8.63700 -8.07814 -7.95644 -6.09561 -4.29707 1.48380 1.91279 2.12221 2.21508 2.61450 3.23212 3.25054 3.29614 3.31282 3.58992 4.30833 4.35478 4.50012 4.71653 4.78046 4.79207 4.84579 4.90329 4.94951 5.03688 5.13284 5.17701 5.18097 5.32318 5.37669 5.41519 5.44985 5.47141 5.58159 5.67254 5.83167 5.85626 5.89918 6.09110 6.21763 6.26558 6.37601 6.55537 6.56029 6.63368 6.65956 6.86400 7.40646 7.55530 7.73105 8.03448 8.72583 9.14950 9.34402 9.50193 10.94263 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020410 B = 0.003147 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.560935 B = 8894.977674 C = 9289.061415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.168 4.168 3 C 0.144 3.856 4 N -0.461 5.461 5 C 0.222 3.778 6 C -0.067 4.067 7 C 0.243 3.757 8 H 0.052 0.948 9 O -0.558 6.558 10 C -0.577 4.577 11 H 0.058 0.942 12 C 0.082 3.918 13 N -0.857 5.857 14 Si 0.891 3.109 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.276 1.276 18 N -0.287 5.287 19 N -0.311 5.311 20 C 0.332 3.668 21 N -0.468 5.468 22 C 0.070 3.930 23 C -0.072 4.072 24 S -0.270 6.270 25 C -0.068 4.068 26 C 0.095 3.905 27 H 0.072 0.928 28 C -0.148 4.148 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.349 0.651 37 H 0.262 0.738 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.111 0.889 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.819 14.236 4.795 19.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C 0.021 3.979 4 N -0.154 5.154 5 C -0.045 4.045 6 C -0.107 4.107 7 C 0.183 3.817 8 H 0.070 0.930 9 O -0.360 6.360 10 C -0.615 4.615 11 H 0.076 0.924 12 C -0.125 4.125 13 N -0.492 5.492 14 Si 0.718 3.282 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.201 1.201 18 N -0.126 5.126 19 N -0.155 5.155 20 C -0.024 4.024 21 N -0.194 5.194 22 C -0.059 4.059 23 C -0.221 4.221 24 S -0.043 6.043 25 C -0.217 4.217 26 C -0.014 4.014 27 H 0.090 0.910 28 C -0.207 4.207 29 H 0.120 0.880 30 H 0.114 0.886 31 H 0.141 0.859 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.193 0.807 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.131 0.869 42 H 0.110 0.890 43 H 0.129 0.871 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.437 14.169 6.654 20.630 hybrid contribution 1.028 -0.678 -2.658 2.929 sum -12.409 13.491 3.996 18.761 Atomic orbital electron populations 1.23806 0.95418 1.01930 0.99363 1.23209 0.96355 0.98447 1.00647 1.20862 0.91302 0.97319 0.88405 1.46341 1.10097 1.50116 1.08835 1.25335 0.81050 0.99482 0.98620 1.21275 0.98376 1.02291 0.88779 1.19276 0.94413 0.82364 0.85603 0.93013 1.86580 1.24959 1.75204 1.49273 1.21559 1.40897 0.92614 1.06423 0.92363 1.25017 0.94425 0.96800 0.96263 1.70067 1.42246 1.01555 1.35298 0.86712 0.80244 0.77638 0.83650 1.20002 1.21192 1.20138 1.74059 1.22819 1.17212 0.98529 1.74543 0.96806 1.18257 1.25869 1.21700 0.92140 1.05241 0.83333 1.57715 1.21663 1.02799 1.37249 1.22223 0.93478 0.96211 0.93986 1.23542 0.98399 0.95228 1.04928 1.86945 1.71529 1.04949 1.40854 1.23585 0.96254 1.00945 1.00912 1.21811 0.94756 0.85945 0.98897 0.91008 1.21945 1.00383 0.99476 0.98906 0.87955 0.88564 0.85912 0.88732 0.87839 0.89124 0.90459 0.80656 0.92812 0.89270 0.91598 0.88780 0.86908 0.88974 0.87057 0.92073 0.91160 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 14.32 29.01 0.42 -1.40 16 2 C -0.17 -2.26 9.85 -36.03 -0.35 -2.62 16 3 C 0.14 1.84 6.50 -5.19 -0.03 1.81 16 4 N -0.46 -7.33 2.79 -115.36 -0.32 -7.65 16 5 C 0.22 4.19 7.09 -154.02 -1.09 3.10 16 6 C -0.07 -1.28 5.20 -27.88 -0.15 -1.42 16 7 C 0.24 5.76 2.81 -27.88 -0.08 5.68 16 8 H 0.05 1.35 7.34 -51.93 -0.38 0.97 16 9 O -0.56 -14.32 12.48 -35.23 -0.44 -14.76 16 10 C -0.58 -14.79 8.76 -34.44 -0.30 -15.09 16 11 H 0.06 1.43 7.74 -52.48 -0.41 1.02 16 12 C 0.08 2.18 5.40 -17.82 -0.10 2.09 16 13 N -0.86 -24.45 12.84 55.43 0.71 -23.74 16 14 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 15 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 18 N -0.29 -5.95 12.18 32.99 0.40 -5.54 16 19 N -0.31 -5.93 11.84 30.32 0.36 -5.57 16 20 C 0.33 5.24 4.34 -318.86 -1.38 3.86 16 21 N -0.47 -5.79 4.34 -167.31 -0.73 -6.52 16 22 C 0.07 0.83 5.36 -3.93 -0.02 0.81 16 23 C -0.07 -0.67 6.69 37.28 0.25 -0.43 16 24 S -0.27 -2.68 22.40 -107.50 -2.41 -5.09 16 25 C -0.07 -0.59 5.97 37.29 0.22 -0.37 16 26 C 0.10 1.03 2.44 -67.81 -0.17 0.86 16 27 H 0.07 0.88 7.91 -51.93 -0.41 0.47 16 28 C -0.15 -1.55 8.64 37.16 0.32 -1.23 16 29 H 0.10 1.05 8.06 -52.49 -0.42 0.63 16 30 H 0.10 0.87 7.84 -52.49 -0.41 0.46 16 31 H 0.12 2.07 7.25 -52.49 -0.38 1.69 16 32 H 0.09 1.00 7.80 -51.93 -0.40 0.60 16 33 H 0.10 1.25 7.10 -51.93 -0.37 0.89 16 34 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 35 H 0.08 1.31 7.17 -51.93 -0.37 0.94 16 36 H 0.35 8.12 9.04 45.56 0.41 8.53 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.09 1.19 7.93 -51.93 -0.41 0.78 16 39 H 0.07 0.85 7.91 -51.93 -0.41 0.43 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.89 6.65 -51.93 -0.35 0.55 16 LS Contribution 388.16 15.07 5.85 5.85 Total: -1.00 -31.35 388.16 -10.47 -41.82 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.41 Total: 10.30 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.46 Total: -4.36 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.42 Total: -49.03 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.44 Total: -14.76 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.41 Total: -5.09 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.35 -10.47 -41.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121629496.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.506 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds