Wall clock time and date at job start Tue Mar 31 2020 21:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50697 * 120.00152 * 2 1 4 4 N 1.46507 * 109.46938 * 126.07498 * 3 2 1 5 5 C 1.36732 * 127.13664 * 95.33533 * 4 3 2 6 6 C 1.50700 * 126.34378 * 359.97438 * 5 4 3 7 7 C 1.53005 * 109.46903 * 269.71050 * 6 5 4 8 8 H 1.08999 * 109.46912 * 55.00567 * 7 6 5 9 9 O 1.42899 * 109.47294 * 295.00081 * 7 6 5 10 10 C 1.50706 * 109.47098 * 175.00301 * 7 6 5 11 11 H 1.08005 * 119.99862 * 0.02562 * 10 7 6 12 12 C 1.37868 * 119.99905 * 180.02562 * 10 7 6 13 13 N 1.31515 * 120.00204 * 359.97438 * 12 10 7 14 14 Si 1.86803 * 119.99930 * 179.97438 * 12 10 7 15 15 H 1.48500 * 109.46951 * 60.00327 * 14 12 10 16 16 H 1.48500 * 109.47156 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47168 * 300.00081 * 14 12 10 18 18 N 1.30293 * 107.30604 * 179.73197 * 5 4 3 19 19 N 1.28522 * 110.05428 * 0.26245 * 18 5 4 20 20 C 1.31222 * 109.85960 * 359.97438 * 19 18 5 21 21 N 1.38586 * 126.47107 * 179.97438 * 20 19 18 22 22 C 1.46468 * 111.00309 * 296.59059 * 21 20 19 23 23 C 1.53244 * 109.85836 * 197.76303 * 22 21 20 24 24 S 1.81895 * 108.51099 * 297.99791 * 23 22 21 25 25 C 1.81905 * 101.91264 * 51.30768 * 24 23 22 26 26 C 1.46471 * 110.99674 * 62.57392 * 21 20 19 27 27 H 1.09001 * 109.40913 * 282.35010 * 26 21 20 28 28 C 1.52999 * 109.41029 * 42.11311 * 26 21 20 29 29 H 1.08001 * 120.00182 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99681 * 0.02562 * 1 2 3 31 31 H 1.08000 * 119.99681 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47300 * 6.07729 * 3 2 1 33 33 H 1.09001 * 109.47519 * 246.07719 * 3 2 1 34 34 H 1.09008 * 109.47232 * 149.71723 * 6 5 4 35 35 H 1.09000 * 109.47619 * 29.71106 * 6 5 4 36 36 H 0.96704 * 114.00030 * 300.00468 * 9 7 6 37 37 H 0.97004 * 119.99982 * 180.02562 * 13 12 10 38 38 H 1.08994 * 109.40604 * 317.88573 * 22 21 20 39 39 H 1.08999 * 109.39964 * 77.64804 * 22 21 20 40 40 H 1.09003 * 109.63150 * 57.70504 * 23 22 21 41 41 H 1.09000 * 109.63368 * 178.28739 * 23 22 21 42 42 H 1.09000 * 109.63095 * 68.39734 * 25 24 23 43 43 H 1.09002 * 109.63063 * 188.79537 * 25 24 23 44 44 H 1.09006 * 109.46977 * 59.07314 * 28 26 21 45 45 H 1.08997 * 109.47611 * 179.07921 * 28 26 21 46 46 H 1.09005 * 109.47086 * 299.08121 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0121 1.3212 1.1164 5 6 4.3368 0.9844 1.0791 6 6 5.1066 0.5207 -0.1306 7 6 5.0341 -1.0046 -0.2273 8 1 3.9905 -1.3193 -0.2294 9 8 5.7046 -1.5854 0.8930 10 6 5.6985 -1.4593 -1.5013 11 1 6.1297 -0.7330 -2.1744 12 6 5.7558 -2.8023 -1.8075 13 7 5.2311 -3.6867 -0.9876 14 14 6.5786 -3.3659 -3.3870 15 1 8.0005 -2.9376 -3.3845 16 1 6.5084 -4.8463 -3.4808 17 1 5.8817 -2.7620 -4.5510 18 7 4.8113 1.1438 2.2820 19 7 3.8824 1.5499 3.0720 20 6 2.7562 1.6730 2.4097 21 7 1.5382 2.0865 2.9255 22 6 1.0503 1.1465 3.9374 23 6 -0.4493 1.3617 4.1677 24 16 -0.7006 3.0500 4.7964 25 6 0.2110 4.0446 3.5763 26 6 1.6199 3.4601 3.4274 27 1 2.1173 3.4624 4.3973 28 6 2.4231 4.3138 2.4441 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3603 2.1307 0.1088 33 1 2.6062 1.4114 -0.9394 34 1 6.1480 0.8298 -0.0391 35 1 4.6739 0.9626 -1.0281 36 1 6.6397 -1.3477 0.9583 37 1 5.2718 -4.6317 -1.2029 38 1 1.2215 0.1257 3.5959 39 1 1.5873 1.3096 4.8718 40 1 -0.9858 1.2376 3.2270 41 1 -0.8148 0.6406 4.8988 42 1 -0.3038 4.0084 2.6162 43 1 0.2742 5.0773 3.9194 44 1 1.9382 4.2968 1.4680 45 1 2.4707 5.3400 2.8084 46 1 3.4327 3.9126 2.3552 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121629496.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:57 Heat of formation + Delta-G solvation = 41.764540 kcal Electronic energy + Delta-G solvation = -28573.985233 eV Core-core repulsion = 24819.358027 eV Total energy + Delta-G solvation = -3754.627206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.05858 -39.79613 -37.98652 -37.08457 -34.26473 -34.11223 -33.81143 -33.24422 -31.37569 -29.19862 -28.31323 -27.70976 -27.07853 -24.10615 -23.59249 -23.34839 -22.02087 -21.02528 -20.72998 -19.14783 -18.44675 -17.81918 -17.63824 -17.09083 -16.67082 -16.56590 -16.33282 -15.91758 -15.58704 -15.24392 -15.22676 -14.98887 -14.57710 -14.44546 -14.29258 -13.91128 -13.70878 -13.32757 -13.31364 -13.21767 -13.09423 -12.91767 -12.83473 -12.68616 -12.47904 -12.45898 -12.39645 -12.05109 -11.94790 -11.57956 -11.21449 -11.08814 -10.78428 -10.69937 -10.53769 -10.41510 -10.03256 -9.76819 -8.72805 -8.13190 -6.39719 0.67536 0.74285 0.98465 1.43161 1.44848 1.47049 1.51887 1.52737 1.81846 2.40014 2.53293 3.13991 3.42388 3.54134 3.63294 3.68439 3.81875 3.88509 3.97336 4.03695 4.08283 4.14308 4.17835 4.28131 4.40184 4.42641 4.48163 4.55058 4.58024 4.62799 4.66602 4.78427 4.80601 4.91114 4.93244 4.97288 5.02941 5.08386 5.48783 5.55630 5.58928 5.61945 5.69291 5.73097 6.03382 6.19477 6.71446 7.33824 7.53797 7.74645 8.90986 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020410 B = 0.003147 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.560935 B = 8894.977674 C = 9289.061415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.201 4.201 3 C 0.143 3.857 4 N -0.456 5.456 5 C 0.207 3.793 6 C -0.050 4.050 7 C 0.245 3.755 8 H 0.021 0.979 9 O -0.580 6.580 10 C -0.583 4.583 11 H 0.071 0.929 12 C 0.028 3.972 13 N -0.901 5.901 14 Si 0.959 3.041 15 H -0.268 1.268 16 H -0.290 1.290 17 H -0.263 1.263 18 N -0.321 5.321 19 N -0.348 5.348 20 C 0.354 3.646 21 N -0.456 5.456 22 C 0.071 3.929 23 C -0.060 4.060 24 S -0.287 6.287 25 C -0.055 4.055 26 C 0.095 3.905 27 H 0.054 0.946 28 C -0.142 4.142 29 H 0.107 0.893 30 H 0.128 0.872 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.357 0.643 37 H 0.260 0.740 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.105 0.895 41 H 0.126 0.874 42 H 0.107 0.893 43 H 0.133 0.867 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.853 16.425 3.494 22.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.220 4.220 3 C 0.022 3.978 4 N -0.148 5.148 5 C -0.061 4.061 6 C -0.090 4.090 7 C 0.186 3.814 8 H 0.039 0.961 9 O -0.384 6.384 10 C -0.620 4.620 11 H 0.089 0.911 12 C -0.175 4.175 13 N -0.538 5.538 14 Si 0.784 3.216 15 H -0.193 1.193 16 H -0.216 1.216 17 H -0.188 1.188 18 N -0.160 5.160 19 N -0.192 5.192 20 C -0.003 4.003 21 N -0.183 5.183 22 C -0.058 4.058 23 C -0.209 4.209 24 S -0.059 6.059 25 C -0.204 4.204 26 C -0.014 4.014 27 H 0.072 0.928 28 C -0.201 4.201 29 H 0.126 0.874 30 H 0.146 0.854 31 H 0.095 0.905 32 H 0.145 0.855 33 H 0.127 0.873 34 H 0.112 0.888 35 H 0.118 0.882 36 H 0.201 0.799 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.124 0.876 41 H 0.144 0.856 42 H 0.125 0.875 43 H 0.151 0.849 44 H 0.091 0.909 45 H 0.113 0.887 46 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -15.477 16.383 5.340 23.161 hybrid contribution 1.548 -1.334 -2.175 2.984 sum -13.929 15.049 3.165 20.749 Atomic orbital electron populations 1.24061 0.94241 1.03664 0.94964 1.22922 0.97261 0.96990 1.04799 1.21135 0.91238 0.97920 0.87524 1.46481 1.09572 1.49112 1.09650 1.25127 0.82453 1.00473 0.98037 1.20938 0.99104 0.98851 0.90103 1.19118 0.92358 0.85274 0.84615 0.96136 1.86534 1.25656 1.76134 1.50078 1.21981 1.40084 0.92960 1.07021 0.91123 1.25885 0.95048 0.97092 0.99473 1.70230 1.44276 1.01678 1.37580 0.85622 0.79412 0.76762 0.79845 1.19268 1.21628 1.18794 1.73942 1.24374 1.18220 0.99470 1.74449 0.97892 1.20184 1.26638 1.22015 0.92411 1.02684 0.83144 1.58050 1.19230 1.03723 1.37340 1.22204 0.95433 0.95171 0.92948 1.23482 0.95964 0.95472 1.05937 1.87082 1.71523 1.05364 1.41939 1.23589 0.94089 1.01428 1.01275 1.21895 0.96502 0.84960 0.98067 0.92809 1.21909 0.98210 1.00480 0.99539 0.87448 0.85353 0.90527 0.85547 0.87320 0.88751 0.88196 0.79853 0.93144 0.91188 0.93029 0.87605 0.85566 0.87477 0.84918 0.90877 0.88723 0.95159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 14.32 67.77 0.97 -1.56 16 2 C -0.20 -5.35 9.85 25.64 0.25 -5.10 16 3 C 0.14 3.47 6.50 85.63 0.56 4.02 16 4 N -0.46 -14.52 2.79 -518.90 -1.45 -15.97 16 5 C 0.21 8.04 7.09 137.64 0.98 9.01 16 6 C -0.05 -1.93 5.20 29.85 0.16 -1.78 16 7 C 0.25 12.04 2.81 29.85 0.08 12.13 16 8 H 0.02 1.14 7.34 -2.39 -0.02 1.13 16 9 O -0.58 -31.15 12.48 -148.98 -1.86 -33.01 16 10 C -0.58 -30.12 8.76 25.60 0.22 -29.90 16 11 H 0.07 3.40 7.74 -2.91 -0.02 3.38 16 12 C 0.03 1.49 5.40 84.65 0.46 1.95 16 13 N -0.90 -53.02 12.84 21.44 0.28 -52.75 16 14 Si 0.96 41.74 29.54 68.60 2.03 43.77 16 15 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 16 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 17 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 18 N -0.32 -13.83 12.18 -49.54 -0.60 -14.43 16 19 N -0.35 -13.75 11.84 -58.00 -0.69 -14.44 16 20 C 0.35 11.23 4.34 260.11 1.13 12.36 16 21 N -0.46 -10.75 4.34 -683.25 -2.97 -13.72 16 22 C 0.07 1.66 5.36 86.47 0.46 2.12 16 23 C -0.06 -0.99 6.69 72.06 0.48 -0.51 16 24 S -0.29 -4.96 22.40 -56.49 -1.27 -6.23 16 25 C -0.06 -0.77 5.97 72.07 0.43 -0.34 16 26 C 0.09 1.87 2.44 45.08 0.11 1.98 16 27 H 0.05 1.28 7.91 -2.39 -0.02 1.27 16 28 C -0.14 -2.68 8.64 71.98 0.62 -2.06 16 29 H 0.11 1.97 8.06 -2.91 -0.02 1.95 16 30 H 0.13 1.70 7.84 -2.91 -0.02 1.68 16 31 H 0.08 2.78 7.25 -2.91 -0.02 2.76 16 32 H 0.13 2.24 7.80 -2.39 -0.02 2.22 16 33 H 0.11 2.49 7.10 -2.39 -0.02 2.47 16 34 H 0.09 3.55 8.14 -2.38 -0.02 3.53 16 35 H 0.10 3.34 7.17 -2.39 -0.02 3.32 16 36 H 0.36 17.33 9.04 -74.05 -0.67 16.67 16 37 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 38 H 0.07 1.90 7.93 -2.39 -0.02 1.88 16 39 H 0.05 1.35 7.91 -2.39 -0.02 1.33 16 40 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 45 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 46 H 0.03 0.80 6.65 -2.38 -0.02 0.78 16 Total: -1.00 -71.35 388.16 0.70 -70.66 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: 0.31 Total: 33.80 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 6.91 Total: 2.32 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -5.43 Total: -111.31 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -1.86 Total: -33.01 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Atomic # 16 Polarization: -4.96 SS G_CDS: -1.27 Total: -6.23 kcal Total: -71.35 0.70 -70.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121629496.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.422 kcal (2) G-P(sol) polarization free energy of solvation -71.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds