Wall clock time and date at job start Tue Mar 31 2020 20:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.87447 * 2 1 4 4 C 1.54321 * 109.88419 * 121.01813 * 2 1 3 5 5 H 1.08998 * 110.71957 * 215.91273 * 4 2 1 6 6 N 1.46895 * 110.71871 * 339.01366 * 4 2 1 7 7 C 1.46909 * 110.99937 * 198.16734 * 6 4 2 8 8 C 1.50695 * 109.47151 * 180.02562 * 7 6 4 9 9 C 1.35316 * 126.13010 * 95.02449 * 8 7 6 10 10 C 1.39872 * 107.92042 * 179.97438 * 9 8 7 11 11 N 1.30842 * 108.20256 * 359.97438 * 10 9 8 12 12 N 1.34950 * 126.12582 * 274.71178 * 8 7 6 13 13 C 1.46503 * 126.03479 * 0.03364 * 12 8 7 14 14 C 1.55160 * 103.10253 * 97.46625 * 4 2 1 15 15 C 1.55126 * 101.48575 * 35.27936 * 14 4 2 16 16 N 1.47020 * 110.00873 * 238.90399 * 2 1 3 17 17 C 1.34779 * 125.65279 * 59.48325 * 16 2 1 18 18 O 1.21286 * 119.99592 * 0.02562 * 17 16 2 19 19 C 1.50696 * 120.00518 * 179.97438 * 17 16 2 20 20 S 1.80993 * 109.47339 * 180.02562 * 19 17 16 21 21 C 1.76200 * 100.00351 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99778 * 359.97438 * 21 20 19 23 23 C 1.38800 * 120.00456 * 179.97438 * 21 20 19 24 24 N 1.31626 * 119.99930 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 119.99749 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47334 * 89.99760 * 25 23 21 27 27 H 1.48501 * 109.46902 * 209.99863 * 25 23 21 28 28 H 1.48504 * 109.47295 * 329.99579 * 25 23 21 29 29 H 1.09008 * 109.46834 * 305.26841 * 1 2 3 30 30 H 1.08999 * 109.47601 * 65.26169 * 1 2 3 31 31 H 1.08995 * 109.47479 * 185.26680 * 1 2 3 32 32 H 1.00897 * 111.00126 * 322.11788 * 6 4 2 33 33 H 1.09000 * 109.47208 * 59.99555 * 7 6 4 34 34 H 1.09005 * 109.46859 * 300.00250 * 7 6 4 35 35 H 1.07998 * 126.03499 * 359.93993 * 9 8 7 36 36 H 1.08001 * 125.89581 * 179.97438 * 10 9 8 37 37 H 1.09010 * 109.46979 * 90.00130 * 13 12 8 38 38 H 1.09000 * 109.47438 * 209.99841 * 13 12 8 39 39 H 1.09003 * 109.47542 * 330.00478 * 13 12 8 40 40 H 1.09004 * 111.00639 * 153.48775 * 14 4 2 41 41 H 1.09000 * 111.00362 * 277.33926 * 14 4 2 42 42 H 1.08996 * 110.42193 * 204.28904 * 15 14 4 43 43 H 1.08999 * 110.29382 * 82.09254 * 15 14 4 44 44 H 1.08999 * 109.47316 * 300.00152 * 19 17 16 45 45 H 1.09008 * 109.47180 * 60.00320 * 19 17 16 46 46 H 0.97000 * 119.99770 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7478 1.2437 5 1 2.9624 -0.2775 1.6219 6 7 1.0252 -0.8028 2.2900 7 6 1.6196 -1.1102 3.5978 8 6 0.5355 -1.1587 4.6434 9 6 -0.1076 -2.2683 5.0750 10 6 -1.0354 -1.8777 6.0461 11 7 -0.9520 -0.5802 6.1926 12 7 0.0361 -0.1041 5.3213 13 6 0.4520 1.2926 5.1705 14 6 2.3591 -2.1680 0.6978 15 6 2.8616 -1.8473 -0.7344 16 7 2.0330 -0.7135 -1.1829 17 6 1.7792 -0.3851 -2.4653 18 8 1.0813 0.5738 -2.7189 19 6 2.3636 -1.2086 -3.5839 20 16 1.8451 -0.5194 -5.1750 21 6 2.6462 -1.6427 -6.2709 22 1 3.2392 -2.4536 -5.8744 23 6 2.5153 -1.4855 -7.6437 24 7 3.1143 -2.3245 -8.4623 25 14 1.4904 -0.0826 -8.3296 26 1 2.3524 1.1107 -8.5254 27 1 0.9040 -0.4887 -9.6321 28 1 0.3997 0.2457 -7.3766 29 1 -0.3633 0.5934 0.8391 30 1 -0.3634 0.4300 -0.9333 31 1 -0.3634 -1.0233 0.0943 32 1 0.4992 0.0575 2.3252 33 1 2.3426 -0.3374 3.8591 34 1 2.1219 -2.0764 3.5505 35 1 0.0647 -3.2771 4.7301 36 1 -1.7051 -2.5339 6.5822 37 1 -0.1558 1.7718 4.4028 38 1 0.3195 1.8155 6.1176 39 1 1.5015 1.3298 4.8786 40 1 3.1357 -2.6552 1.2875 41 1 1.4552 -2.7764 0.6662 42 1 2.7164 -2.7061 -1.3896 43 1 3.9135 -1.5625 -0.7110 44 1 3.4515 -1.1912 -3.5179 45 1 2.0110 -2.2368 -3.5007 46 1 3.0231 -2.2144 -9.4217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178147915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:02 Heat of formation + Delta-G solvation = 57.710619 kcal Electronic energy + Delta-G solvation = -26502.363126 eV Core-core repulsion = 22748.427394 eV Total energy + Delta-G solvation = -3753.935732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.59369 -40.29736 -37.96860 -35.56177 -33.58992 -32.44783 -32.17820 -31.25448 -30.17380 -28.47106 -27.14055 -26.08689 -25.62339 -24.82034 -23.12974 -21.50415 -20.45416 -20.24327 -19.12860 -17.78617 -17.27435 -16.70201 -16.51119 -16.14701 -15.80179 -15.37473 -15.01606 -14.93248 -14.77814 -14.22913 -14.11932 -13.85644 -13.65089 -13.40504 -13.11995 -12.98599 -12.85200 -12.81617 -12.67576 -12.50152 -12.48210 -12.01174 -11.78268 -11.64895 -11.27226 -11.19920 -11.01582 -10.95696 -10.88231 -10.61167 -9.86270 -9.70834 -9.46826 -9.04347 -9.01050 -8.84629 -8.61811 -8.50463 -6.92788 -6.29581 -4.01358 1.43825 2.11723 2.48639 2.65452 2.93206 3.15344 3.32504 3.50039 3.57150 3.72176 4.00852 4.12825 4.20005 4.32564 4.34128 4.49654 4.65433 4.69283 4.71990 4.77929 4.90417 4.95496 5.04319 5.09157 5.09757 5.17450 5.30406 5.32604 5.36077 5.41064 5.42878 5.53959 5.62178 5.75620 5.80449 5.89439 5.97917 6.00694 6.25744 6.30827 6.40483 6.47651 6.62993 6.75354 7.34914 7.56435 7.93465 8.40866 8.43054 9.16602 10.79590 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.031128 B = 0.001986 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.298470 B =14095.016336 C =14442.608598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.140 3.860 3 H 0.071 0.929 4 C 0.076 3.924 5 H 0.062 0.938 6 N -0.667 5.667 7 C 0.122 3.878 8 C 0.084 3.916 9 C -0.251 4.251 10 C 0.044 3.956 11 N -0.297 5.297 12 N -0.373 5.373 13 C 0.096 3.904 14 C -0.120 4.120 15 C 0.098 3.902 16 N -0.618 5.618 17 C 0.549 3.451 18 O -0.516 6.516 19 C -0.118 4.118 20 S -0.142 6.142 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.345 0.655 33 H 0.043 0.957 34 H 0.102 0.898 35 H 0.148 0.852 36 H 0.183 0.817 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.354 1.616 30.103 30.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.036 3.964 3 H 0.089 0.911 4 C -0.034 4.034 5 H 0.079 0.921 6 N -0.301 5.301 7 C -0.008 4.008 8 C -0.043 4.043 9 C -0.281 4.281 10 C -0.141 4.141 11 N -0.118 5.118 12 N -0.156 5.156 13 C -0.045 4.045 14 C -0.158 4.158 15 C -0.026 4.026 16 N -0.356 5.356 17 C 0.338 3.662 18 O -0.390 6.390 19 C -0.268 4.268 20 S 0.084 5.916 21 C -0.668 4.668 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.516 5.516 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.166 0.834 33 H 0.061 0.939 34 H 0.120 0.880 35 H 0.166 0.834 36 H 0.200 0.800 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.114 0.886 45 H 0.115 0.885 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.937 3.550 29.913 30.265 hybrid contribution 1.303 -0.565 -0.414 1.479 sum -1.634 2.985 29.498 29.694 Atomic orbital electron populations 1.21994 0.93998 1.02928 1.02409 1.21454 0.95566 0.95372 0.84044 0.91099 1.22596 0.92990 0.96987 0.90800 0.92056 1.60662 1.25084 1.41472 1.02907 1.20528 0.91637 1.02915 0.85716 1.20883 0.98797 0.88123 0.96503 1.21267 1.03040 0.99283 1.04494 1.23871 0.99362 0.92480 0.98401 1.77384 1.08105 1.12386 1.13972 1.48493 1.29433 1.06867 1.30817 1.21868 1.00561 0.77899 1.04181 1.22883 1.02393 0.96077 0.94490 1.22373 0.94873 0.89799 0.95521 1.48445 1.51696 1.30886 1.04556 1.19966 0.80117 0.84722 0.81428 1.90690 1.37463 1.28270 1.82585 1.23258 1.04006 1.02472 0.97074 1.84784 1.68397 1.42801 0.95600 1.22303 1.35998 1.15694 0.92833 0.89385 1.24711 0.94728 0.96050 0.95830 1.69936 1.41953 1.36187 1.03568 0.86736 0.82401 0.82549 0.80170 1.19230 1.19935 1.15921 0.92551 0.90848 0.91468 0.83401 0.93934 0.88014 0.83386 0.79984 0.90573 0.89105 0.89757 0.90076 0.89199 0.89890 0.91281 0.88637 0.88524 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 8.31 37.15 0.31 -1.47 16 2 C 0.14 1.50 3.40 -66.96 -0.23 1.27 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 4 C 0.08 0.55 3.10 -65.88 -0.20 0.35 16 5 H 0.06 0.38 7.93 -51.93 -0.41 -0.03 16 6 N -0.67 -4.45 5.51 -106.05 -0.58 -5.03 16 7 C 0.12 0.68 5.71 -4.97 -0.03 0.65 16 8 C 0.08 0.65 6.44 -82.27 -0.53 0.12 16 9 C -0.25 -2.02 10.72 -40.01 -0.43 -2.45 16 10 C 0.04 0.38 12.03 -17.36 -0.21 0.17 16 11 N -0.30 -3.05 12.58 30.63 0.39 -2.66 16 12 N -0.37 -3.08 4.01 -63.88 -0.26 -3.34 16 13 C 0.10 0.46 11.27 59.85 0.67 1.14 16 14 C -0.12 -0.87 6.63 -24.46 -0.16 -1.03 16 15 C 0.10 0.94 6.69 -2.41 -0.02 0.92 16 16 N -0.62 -8.14 3.09 -162.89 -0.50 -8.64 16 17 C 0.55 9.86 7.65 -10.99 -0.08 9.78 16 18 O -0.52 -11.04 14.69 5.55 0.08 -10.96 16 19 C -0.12 -2.29 5.16 36.00 0.19 -2.10 16 20 S -0.14 -3.60 18.55 -107.50 -1.99 -5.60 16 21 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 22 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 23 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 24 N -0.88 -26.44 13.97 55.49 0.78 -25.67 16 25 Si 0.86 21.76 27.74 -169.99 -4.72 17.04 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 29 H 0.06 0.52 6.61 -51.92 -0.34 0.17 16 30 H 0.07 1.09 6.59 -51.93 -0.34 0.75 16 31 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 32 H 0.35 2.34 6.67 -39.29 -0.26 2.08 16 33 H 0.04 0.19 7.18 -51.93 -0.37 -0.19 16 34 H 0.10 0.50 8.06 -51.93 -0.42 0.08 16 35 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.24 7.14 -51.93 -0.37 -0.13 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 0.81 7.48 -51.93 -0.39 0.42 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 45 H 0.10 1.76 7.85 -51.91 -0.41 1.36 16 46 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 386.81 15.07 5.83 5.83 Total: -1.00 -35.75 386.81 -8.61 -44.36 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.12 Total: -0.74 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -0.51 Total: -4.59 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -0.18 Total: -45.34 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.72 Total: 17.04 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.75 -8.61 -44.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178147915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.066 kcal (2) G-P(sol) polarization free energy of solvation -35.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds