Wall clock time and date at job start Tue Mar 31 2020 20:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08991 * 110.30688 * 2 1 4 4 C 1.54798 * 110.52292 * 237.77187 * 2 1 3 5 5 N 1.48146 * 104.41925 * 265.22529 * 4 2 1 6 6 C 1.34776 * 127.83733 * 140.37197 * 5 4 2 7 7 O 1.21567 * 119.99926 * 185.02784 * 6 5 4 8 8 C 1.47697 * 120.00212 * 5.02189 * 6 5 4 9 9 C 1.39655 * 120.15291 * 34.93800 * 8 6 5 10 10 C 1.38066 * 119.85408 * 180.02562 * 9 8 6 11 11 F 1.35101 * 119.92052 * 180.02562 * 10 9 8 12 12 C 1.38660 * 120.16193 * 0.02562 * 10 9 8 13 13 C 1.38182 * 120.31488 * 0.02562 * 12 10 9 14 14 C 1.38311 * 120.14761 * 359.97438 * 13 12 10 15 15 F 1.35096 * 120.08480 * 179.97438 * 14 13 12 16 16 C 1.48144 * 104.32409 * 320.10673 * 5 4 2 17 17 C 1.54286 * 110.34486 * 122.18334 * 2 1 3 18 18 C 1.53002 * 110.33758 * 359.97438 * 17 2 1 19 19 C 1.53007 * 110.33855 * 237.74301 * 17 2 1 20 20 N 1.46497 * 109.46593 * 183.00339 * 19 17 2 21 21 C 1.36940 * 119.99793 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99888 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00274 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00000 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99771 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46738 * 90.00346 * 25 23 21 27 27 H 1.48500 * 109.47062 * 210.00000 * 25 23 21 28 28 H 1.48497 * 109.47313 * 329.99862 * 25 23 21 29 29 H 1.09000 * 109.47363 * 297.82092 * 1 2 3 30 30 H 1.09002 * 109.47087 * 57.82456 * 1 2 3 31 31 H 1.09005 * 109.47388 * 177.81923 * 1 2 3 32 32 H 1.09007 * 110.54201 * 146.48487 * 4 2 1 33 33 H 1.09002 * 110.46278 * 23.92552 * 4 2 1 34 34 H 1.08004 * 120.07538 * 359.97438 * 9 8 6 35 35 H 1.08005 * 119.83644 * 180.02562 * 12 10 9 36 36 H 1.07999 * 119.92755 * 179.70317 * 13 12 10 37 37 H 1.08999 * 110.40795 * 158.62954 * 16 5 4 38 38 H 1.09001 * 110.41070 * 280.94779 * 16 5 4 39 39 H 1.09005 * 109.46937 * 176.99721 * 18 17 2 40 40 H 1.08999 * 109.47184 * 296.99385 * 18 17 2 41 41 H 1.08999 * 109.47316 * 56.99796 * 18 17 2 42 42 H 1.09002 * 109.46961 * 303.00175 * 19 17 2 43 43 H 1.08994 * 109.47214 * 63.00401 * 19 17 2 44 44 H 0.96997 * 120.00338 * 359.97438 * 20 19 17 45 45 H 0.97006 * 120.00388 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0726 -0.7731 -1.2264 5 7 2.3138 -2.1446 -0.7207 6 6 2.0773 -3.3118 -1.3516 7 8 2.2446 -4.3640 -0.7661 8 6 1.6146 -3.3127 -2.7542 9 6 2.0731 -2.3395 -3.6447 10 6 1.6362 -2.3459 -4.9544 11 9 2.0792 -1.4053 -5.8172 12 6 0.7438 -3.3152 -5.3865 13 6 0.2849 -4.2807 -4.5109 14 6 0.7141 -4.2865 -3.1961 15 9 0.2643 -5.2308 -2.3410 16 6 2.8801 -1.9417 0.6331 17 6 2.0663 -0.7705 1.2243 18 6 0.9061 -1.3012 2.0688 19 6 2.9692 0.1325 2.0673 20 7 3.5244 -0.6371 3.1833 21 6 4.3676 -0.0343 4.0782 22 1 4.6230 1.0085 3.9614 23 6 4.8942 -0.7636 5.1354 24 7 5.7042 -0.1841 5.9958 25 14 4.4519 -2.5672 5.3378 26 1 5.4316 -3.4030 4.5983 27 1 4.4831 -2.9258 6.7785 28 1 3.0895 -2.8064 4.7976 29 1 -0.3634 0.4796 0.9089 30 1 -0.3633 0.5473 -0.8699 31 1 -0.3634 -1.0269 -0.0391 32 1 3.0038 -0.3283 -1.5776 33 1 1.3320 -0.7876 -2.0260 34 1 2.7673 -1.5831 -3.3095 35 1 0.4058 -3.3154 -6.4123 36 1 -0.4138 -5.0299 -4.8529 37 1 2.7494 -2.8389 1.2381 38 1 3.9359 -1.6786 0.5680 39 1 1.2996 -1.8875 2.8993 40 1 0.3269 -0.4637 2.4576 41 1 0.2653 -1.9306 1.4512 42 1 3.7818 0.5132 1.4485 43 1 2.3866 0.9677 2.4560 44 1 3.2947 -1.5736 3.2884 45 1 6.0725 -0.6938 6.7344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181736778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:15 Heat of formation + Delta-G solvation = -73.592882 kcal Electronic energy + Delta-G solvation = -30053.283574 eV Core-core repulsion = 25707.520957 eV Total energy + Delta-G solvation = -4345.762617 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.41321 -49.26947 -40.77338 -39.23344 -38.01650 -35.09016 -33.41408 -32.06185 -31.63303 -30.52187 -30.02519 -27.70211 -26.20395 -25.75728 -24.43447 -23.15880 -22.87605 -21.16681 -20.21498 -18.85660 -18.23163 -17.97053 -17.63420 -17.39887 -16.75529 -16.24636 -15.96484 -15.73527 -15.62635 -14.85343 -14.65682 -14.56376 -14.39219 -14.24091 -14.00405 -13.73811 -13.69031 -13.37075 -13.03074 -12.87484 -12.60047 -12.48711 -12.38466 -12.17595 -11.86654 -11.74839 -11.51507 -11.46614 -11.30205 -10.86229 -10.50137 -10.46534 -10.27939 -10.15873 -10.01184 -9.79948 -9.57179 -9.12035 -8.91441 -8.79235 -7.24416 -5.77530 -3.13222 0.11895 0.41318 2.33114 2.63970 2.99712 3.39015 3.42548 3.47599 3.58850 3.62819 3.91269 4.10611 4.29618 4.40221 4.52348 4.57035 4.59571 4.74230 4.99267 5.12532 5.20710 5.25213 5.28814 5.32328 5.35042 5.38709 5.45845 5.47374 5.54218 5.61462 5.69407 5.75825 5.85583 5.88830 5.94919 6.04902 6.09831 6.15461 6.26282 6.41588 6.49808 6.61031 6.67849 7.35439 7.90709 7.97908 8.41374 9.20178 9.92737 10.11822 11.40804 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017121 B = 0.003078 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.007499 B = 9094.757816 C = 9692.846076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.093 0.907 4 C 0.096 3.904 5 N -0.611 5.611 6 C 0.576 3.424 7 O -0.519 6.519 8 C -0.131 4.131 9 C -0.097 4.097 10 C 0.084 3.916 11 F -0.131 7.131 12 C -0.103 4.103 13 C -0.132 4.132 14 C 0.144 3.856 15 F -0.114 7.114 16 C 0.116 3.884 17 C -0.080 4.080 18 C -0.134 4.134 19 C 0.173 3.827 20 N -0.755 5.755 21 C -0.244 4.244 22 H 0.090 0.910 23 C 0.007 3.993 24 N -0.934 5.934 25 Si 0.880 3.120 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.277 1.277 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.154 0.846 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.030 0.970 43 H 0.032 0.968 44 H 0.361 0.639 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.891 -2.911 -26.100 29.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.111 0.889 4 C -0.027 4.027 5 N -0.345 5.345 6 C 0.364 3.636 7 O -0.396 6.396 8 C -0.135 4.135 9 C -0.116 4.116 10 C 0.065 3.935 11 F -0.109 7.109 12 C -0.122 4.122 13 C -0.151 4.151 14 C 0.123 3.877 15 F -0.092 7.092 16 C -0.006 4.006 17 C -0.081 4.081 18 C -0.191 4.191 19 C 0.046 3.954 20 N -0.401 5.401 21 C -0.374 4.374 22 H 0.108 0.892 23 C -0.189 4.189 24 N -0.582 5.582 25 Si 0.710 3.290 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.203 1.203 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.172 0.828 35 H 0.169 0.831 36 H 0.171 0.829 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.195 0.805 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.673 -3.412 -25.693 29.304 hybrid contribution -0.139 -1.227 0.249 1.259 sum -13.812 -4.639 -25.444 29.321 Atomic orbital electron populations 1.21916 0.94373 1.01874 1.01858 1.22197 0.96378 0.99655 0.93250 0.88868 1.22848 1.00824 0.81602 0.97400 1.48845 1.62383 1.05033 1.18189 1.17420 0.78361 0.82922 0.84906 1.90874 1.51932 1.30188 1.66580 1.19854 1.00996 0.97248 0.95432 1.21359 1.00276 0.98471 0.91479 1.17469 0.98527 0.89879 0.87662 1.91555 1.87949 1.62631 1.68770 1.21179 0.96383 0.93333 1.01344 1.21001 1.02307 1.00779 0.90981 1.17661 0.94848 0.87177 0.87968 1.91612 1.86767 1.61421 1.69429 1.22594 0.97611 0.99045 0.81305 1.21777 0.96295 0.95178 0.94836 1.21896 0.97016 1.00971 0.99243 1.20692 0.93551 0.92676 0.88498 1.42743 1.57195 1.09985 1.30145 1.19028 1.18667 0.96614 1.03102 0.89191 1.24648 0.99310 0.97512 0.97457 1.69695 1.35841 1.35775 1.16852 0.86629 0.78281 0.86870 0.77231 1.20939 1.21661 1.20288 0.91613 0.92985 0.92511 0.90315 0.90089 0.82832 0.83131 0.82861 0.89762 0.89672 0.92190 0.91956 0.93015 0.95230 0.95012 0.80524 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 7.94 37.15 0.30 -1.06 16 2 C -0.10 -1.00 3.31 -89.00 -0.29 -1.30 16 3 H 0.09 0.90 7.71 -51.93 -0.40 0.50 16 4 C 0.10 0.92 4.78 -2.19 -0.01 0.91 16 5 N -0.61 -7.95 3.31 -170.22 -0.56 -8.52 16 6 C 0.58 8.34 7.47 -12.40 -0.09 8.25 16 7 O -0.52 -9.68 16.33 5.31 0.09 -9.60 16 8 C -0.13 -1.45 5.50 -104.92 -0.58 -2.03 16 9 C -0.10 -0.82 7.88 -39.12 -0.31 -1.13 16 10 C 0.08 0.63 7.29 -39.49 -0.29 0.34 16 11 F -0.13 -1.04 17.26 2.25 0.04 -1.00 16 12 C -0.10 -0.60 10.01 -39.45 -0.39 -1.00 16 13 C -0.13 -0.89 10.01 -39.58 -0.40 -1.29 16 14 C 0.14 1.50 7.24 -38.97 -0.28 1.22 16 15 F -0.11 -1.48 16.11 2.25 0.04 -1.44 16 16 C 0.12 1.77 5.56 -2.41 -0.01 1.75 16 17 C -0.08 -1.13 0.73 -153.10 -0.11 -1.24 16 18 C -0.13 -1.96 7.08 37.16 0.26 -1.70 16 19 C 0.17 3.08 4.85 -4.04 -0.02 3.06 16 20 N -0.75 -17.27 4.93 -59.91 -0.30 -17.56 16 21 C -0.24 -6.79 10.47 -15.06 -0.16 -6.95 16 22 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 23 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 24 N -0.93 -29.32 13.97 55.49 0.78 -28.54 16 25 Si 0.88 22.39 27.74 -169.99 -4.71 17.67 16 26 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 28 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 29 H 0.06 0.64 6.88 -51.93 -0.36 0.28 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.59 6.72 -51.93 -0.35 0.24 16 32 H 0.08 0.64 7.89 -51.93 -0.41 0.23 16 33 H 0.08 0.64 6.11 -51.93 -0.32 0.32 16 34 H 0.15 1.14 6.18 -52.48 -0.32 0.82 16 35 H 0.15 0.47 8.06 -52.48 -0.42 0.05 16 36 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.08 1.47 7.56 -51.93 -0.39 1.08 16 38 H 0.09 1.35 7.87 -51.93 -0.41 0.94 16 39 H 0.06 1.02 7.01 -51.93 -0.36 0.66 16 40 H 0.06 0.85 6.98 -51.93 -0.36 0.49 16 41 H 0.05 0.71 6.61 -51.93 -0.34 0.36 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.36 8.26 4.14 -40.82 -0.17 8.09 16 45 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -33.99 364.59 -7.53 -41.52 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.90 Total: 4.03 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -2.48 Total: -2.06 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.08 Total: -54.62 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.08 Total: -2.44 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.71 Total: 17.67 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.99 -7.53 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181736778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.069 kcal (2) G-P(sol) polarization free energy of solvation -33.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds