Wall clock time and date at job start Tue Mar 31 2020 20:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08991 * 110.30688 * 2 1 4 4 C 1.54798 * 110.52292 * 237.77187 * 2 1 3 5 5 N 1.48146 * 104.41925 * 265.22529 * 4 2 1 6 6 C 1.34776 * 127.83733 * 140.37197 * 5 4 2 7 7 O 1.21567 * 119.99926 * 185.02784 * 6 5 4 8 8 C 1.47697 * 120.00212 * 5.02189 * 6 5 4 9 9 C 1.39655 * 120.15291 * 34.93800 * 8 6 5 10 10 C 1.38066 * 119.85408 * 180.02562 * 9 8 6 11 11 F 1.35101 * 119.92052 * 180.02562 * 10 9 8 12 12 C 1.38660 * 120.16193 * 0.02562 * 10 9 8 13 13 C 1.38182 * 120.31488 * 0.02562 * 12 10 9 14 14 C 1.38311 * 120.14761 * 359.97438 * 13 12 10 15 15 F 1.35096 * 120.08480 * 179.97438 * 14 13 12 16 16 C 1.48144 * 104.32409 * 320.10673 * 5 4 2 17 17 C 1.54286 * 110.34486 * 122.18334 * 2 1 3 18 18 C 1.53002 * 110.33758 * 359.97438 * 17 2 1 19 19 C 1.53007 * 110.33855 * 237.74301 * 17 2 1 20 20 N 1.46497 * 109.46593 * 183.00339 * 19 17 2 21 21 C 1.36940 * 119.99793 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99888 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00274 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00000 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99771 * 359.97438 * 23 21 20 26 26 H 1.48501 * 109.46738 * 90.00346 * 25 23 21 27 27 H 1.48500 * 109.47062 * 210.00000 * 25 23 21 28 28 H 1.48497 * 109.47313 * 329.99862 * 25 23 21 29 29 H 1.09000 * 109.47363 * 297.82092 * 1 2 3 30 30 H 1.09002 * 109.47087 * 57.82456 * 1 2 3 31 31 H 1.09005 * 109.47388 * 177.81923 * 1 2 3 32 32 H 1.09007 * 110.54201 * 146.48487 * 4 2 1 33 33 H 1.09002 * 110.46278 * 23.92552 * 4 2 1 34 34 H 1.08004 * 120.07538 * 359.97438 * 9 8 6 35 35 H 1.08005 * 119.83644 * 180.02562 * 12 10 9 36 36 H 1.07999 * 119.92755 * 179.70317 * 13 12 10 37 37 H 1.08999 * 110.40795 * 158.62954 * 16 5 4 38 38 H 1.09001 * 110.41070 * 280.94779 * 16 5 4 39 39 H 1.09005 * 109.46937 * 176.99721 * 18 17 2 40 40 H 1.08999 * 109.47184 * 296.99385 * 18 17 2 41 41 H 1.08999 * 109.47316 * 56.99796 * 18 17 2 42 42 H 1.09002 * 109.46961 * 303.00175 * 19 17 2 43 43 H 1.08994 * 109.47214 * 63.00401 * 19 17 2 44 44 H 0.96997 * 120.00338 * 359.97438 * 20 19 17 45 45 H 0.97006 * 120.00388 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0726 -0.7731 -1.2264 5 7 2.3138 -2.1446 -0.7207 6 6 2.0773 -3.3118 -1.3516 7 8 2.2446 -4.3640 -0.7661 8 6 1.6146 -3.3127 -2.7542 9 6 2.0731 -2.3395 -3.6447 10 6 1.6362 -2.3459 -4.9544 11 9 2.0792 -1.4053 -5.8172 12 6 0.7438 -3.3152 -5.3865 13 6 0.2849 -4.2807 -4.5109 14 6 0.7141 -4.2865 -3.1961 15 9 0.2643 -5.2308 -2.3410 16 6 2.8801 -1.9417 0.6331 17 6 2.0663 -0.7705 1.2243 18 6 0.9061 -1.3012 2.0688 19 6 2.9692 0.1325 2.0673 20 7 3.5244 -0.6371 3.1833 21 6 4.3676 -0.0343 4.0782 22 1 4.6230 1.0085 3.9614 23 6 4.8942 -0.7636 5.1354 24 7 5.7042 -0.1841 5.9958 25 14 4.4519 -2.5672 5.3378 26 1 5.4316 -3.4030 4.5983 27 1 4.4831 -2.9258 6.7785 28 1 3.0895 -2.8064 4.7976 29 1 -0.3634 0.4796 0.9089 30 1 -0.3633 0.5473 -0.8699 31 1 -0.3634 -1.0269 -0.0391 32 1 3.0038 -0.3283 -1.5776 33 1 1.3320 -0.7876 -2.0260 34 1 2.7673 -1.5831 -3.3095 35 1 0.4058 -3.3154 -6.4123 36 1 -0.4138 -5.0299 -4.8529 37 1 2.7494 -2.8389 1.2381 38 1 3.9359 -1.6786 0.5680 39 1 1.2996 -1.8875 2.8993 40 1 0.3269 -0.4637 2.4576 41 1 0.2653 -1.9306 1.4512 42 1 3.7818 0.5132 1.4485 43 1 2.3866 0.9677 2.4560 44 1 3.2947 -1.5736 3.2884 45 1 6.0725 -0.6938 6.7344 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181736778.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:14 Heat of formation + Delta-G solvation = -95.079211 kcal Electronic energy + Delta-G solvation = -30054.215291 eV Core-core repulsion = 25707.520957 eV Total energy + Delta-G solvation = -4346.694334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.09568 -49.99220 -41.79277 -40.10953 -39.00088 -36.70339 -34.78606 -33.35938 -32.78264 -31.45006 -31.16074 -28.78686 -27.61123 -26.77205 -25.38907 -24.47898 -23.76503 -22.45974 -21.13592 -20.23601 -19.61023 -18.70049 -18.63795 -18.31805 -17.63594 -17.15225 -16.92488 -16.61906 -16.53034 -16.43687 -15.73528 -15.56895 -15.44874 -15.35645 -15.19710 -14.97552 -14.68670 -14.45688 -14.22241 -13.93526 -13.72177 -13.66500 -13.49826 -13.24976 -13.08006 -12.93469 -12.67866 -12.63416 -12.54110 -12.40701 -12.12944 -11.88576 -11.55451 -11.51233 -11.29739 -11.21447 -10.99878 -10.44235 -9.93943 -9.71384 -9.28913 -8.04699 -5.35851 -0.55399 -0.18344 1.33536 1.35401 1.40975 1.43265 1.66092 2.25871 2.44160 2.92309 2.96877 3.17444 3.27805 3.38257 3.44649 3.56874 3.71830 3.79896 3.89346 3.96355 4.16143 4.19148 4.23232 4.39506 4.46298 4.56175 4.60335 4.67410 4.72401 4.77235 4.78776 4.81154 4.82989 4.90689 4.97070 4.99418 5.03408 5.08271 5.21189 5.30749 5.36799 5.53753 5.57159 5.76217 6.20182 6.33505 6.84009 7.06919 7.84502 8.00738 9.17041 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017121 B = 0.003078 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.007499 B = 9094.757816 C = 9692.846076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.112 0.888 4 C 0.095 3.905 5 N -0.607 5.607 6 C 0.570 3.430 7 O -0.576 6.576 8 C -0.149 4.149 9 C -0.093 4.093 10 C 0.086 3.914 11 F -0.130 7.130 12 C -0.082 4.082 13 C -0.117 4.117 14 C 0.118 3.882 15 F -0.138 7.138 16 C 0.115 3.885 17 C -0.071 4.071 18 C -0.129 4.129 19 C 0.171 3.829 20 N -0.759 5.759 21 C -0.224 4.224 22 H 0.065 0.935 23 C -0.058 4.058 24 N -0.982 5.982 25 Si 0.939 3.061 26 H -0.283 1.283 27 H -0.294 1.294 28 H -0.259 1.259 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.163 0.837 35 H 0.188 0.812 36 H 0.183 0.817 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.029 0.971 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.037 0.963 43 H 0.036 0.964 44 H 0.362 0.638 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.965 -2.343 -30.092 34.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.130 0.870 4 C -0.026 4.026 5 N -0.339 5.339 6 C 0.360 3.640 7 O -0.457 6.457 8 C -0.154 4.154 9 C -0.112 4.112 10 C 0.067 3.933 11 F -0.109 7.109 12 C -0.101 4.101 13 C -0.135 4.135 14 C 0.098 3.902 15 F -0.116 7.116 16 C -0.007 4.007 17 C -0.073 4.073 18 C -0.187 4.187 19 C 0.045 3.955 20 N -0.404 5.404 21 C -0.355 4.355 22 H 0.083 0.917 23 C -0.250 4.250 24 N -0.633 5.633 25 Si 0.768 3.232 26 H -0.210 1.210 27 H -0.220 1.220 28 H -0.184 1.184 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.181 0.819 35 H 0.205 0.795 36 H 0.200 0.800 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.195 0.805 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.789 -2.801 -29.750 33.797 hybrid contribution 0.494 -1.293 1.349 1.933 sum -15.296 -4.094 -28.401 32.517 Atomic orbital electron populations 1.21891 0.93193 1.01555 1.03053 1.22229 0.97293 1.00005 0.91268 0.87037 1.23134 1.02666 0.79275 0.97538 1.48872 1.61501 1.06302 1.17217 1.18033 0.77425 0.82313 0.86193 1.90830 1.54483 1.32158 1.68227 1.19590 1.02830 0.99210 0.93721 1.21358 1.00171 0.97946 0.91722 1.17533 0.98551 0.90110 0.87118 1.91568 1.87999 1.62720 1.68587 1.21583 0.94385 0.91432 1.02660 1.21299 1.01853 1.01259 0.89116 1.18114 0.95847 0.87054 0.89200 1.91551 1.87186 1.62388 1.70500 1.22405 0.97585 0.98128 0.82614 1.21648 0.95264 0.94593 0.95746 1.21855 0.97262 1.01082 0.98462 1.20896 0.94220 0.92981 0.87433 1.42816 1.56583 1.10334 1.30686 1.19063 1.17795 0.95549 1.03098 0.91662 1.25328 1.00198 1.01594 0.97845 1.69846 1.38028 1.37442 1.17968 0.85650 0.78815 0.81984 0.76789 1.20972 1.22033 1.18425 0.91844 0.90302 0.93687 0.88211 0.87584 0.81923 0.79450 0.79987 0.92828 0.90544 0.95141 0.90823 0.92228 0.94493 0.94553 0.80479 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 7.94 71.98 0.57 -1.64 16 2 C -0.09 -1.61 3.31 -9.75 -0.03 -1.65 16 3 H 0.11 1.71 7.71 -2.39 -0.02 1.69 16 4 C 0.10 1.55 4.78 86.68 0.41 1.96 16 5 N -0.61 -15.44 3.31 -810.71 -2.68 -18.13 16 6 C 0.57 16.72 7.47 86.74 0.65 17.37 16 7 O -0.58 -22.65 16.33 -3.93 -0.06 -22.72 16 8 C -0.15 -3.14 5.50 -20.06 -0.11 -3.25 16 9 C -0.09 -1.33 7.88 22.57 0.18 -1.15 16 10 C 0.09 0.95 7.29 22.33 0.16 1.11 16 11 F -0.13 -1.54 17.26 44.97 0.78 -0.77 16 12 C -0.08 -0.57 10.01 22.36 0.22 -0.35 16 13 C -0.12 -1.17 10.01 22.27 0.22 -0.95 16 14 C 0.12 2.32 7.24 22.67 0.16 2.48 16 15 F -0.14 -3.63 16.11 44.97 0.72 -2.90 16 16 C 0.12 3.56 5.56 86.53 0.48 4.04 16 17 C -0.07 -1.95 0.73 -51.27 -0.04 -1.99 16 18 C -0.13 -3.73 7.08 71.98 0.51 -3.22 16 19 C 0.17 5.93 4.85 86.38 0.42 6.35 16 20 N -0.76 -34.87 4.93 -343.45 -1.69 -36.56 16 21 C -0.22 -12.65 10.47 84.03 0.88 -11.77 16 22 H 0.07 3.97 8.06 -2.91 -0.02 3.94 16 23 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 24 N -0.98 -63.44 13.97 21.65 0.30 -63.14 16 25 Si 0.94 47.39 27.74 68.60 1.90 49.29 16 26 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 27 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 28 H -0.26 -12.15 6.52 99.48 0.65 -11.50 16 29 H 0.06 1.05 6.88 -2.39 -0.02 1.03 16 30 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.04 0.83 6.72 -2.38 -0.02 0.81 16 32 H 0.10 1.27 7.89 -2.38 -0.02 1.25 16 33 H 0.11 1.26 6.11 -2.39 -0.01 1.24 16 34 H 0.16 1.93 6.18 -2.91 -0.02 1.91 16 35 H 0.19 0.00 8.06 -2.91 -0.02 -0.03 16 36 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 37 H 0.05 1.97 7.56 -2.39 -0.02 1.95 16 38 H 0.08 2.46 7.87 -2.39 -0.02 2.44 16 39 H 0.03 1.04 7.01 -2.38 -0.02 1.02 16 40 H 0.07 1.93 6.98 -2.39 -0.02 1.91 16 41 H 0.06 1.61 6.61 -2.39 -0.02 1.60 16 42 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.36 16.66 4.14 -92.71 -0.38 16.27 16 45 H 0.26 15.91 8.31 -92.70 -0.77 15.14 16 Total: -1.00 -78.54 364.59 5.02 -73.52 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.59 Total: 17.06 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 5.16 Total: 4.35 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -4.07 Total: -117.82 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.06 Total: -22.72 kcal Atomic # 9 Polarization: -5.17 SS G_CDS: 1.50 Total: -3.67 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.90 Total: 49.29 kcal Total: -78.54 5.02 -73.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181736778.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.563 kcal (2) G-P(sol) polarization free energy of solvation -78.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds