Wall clock time and date at job start Tue Mar 31 2020 20:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.30589 * 2 1 4 4 C 1.54385 * 110.34286 * 237.82299 * 2 1 3 5 5 N 1.48148 * 104.61981 * 217.15769 * 4 2 1 6 6 C 1.34772 * 127.84185 * 219.58910 * 5 4 2 7 7 O 1.21573 * 120.00110 * 6.07934 * 6 5 4 8 8 C 1.47726 * 120.00352 * 186.08592 * 6 5 4 9 9 C 1.39657 * 120.10673 * 22.06970 * 8 6 5 10 10 C 1.37849 * 119.92102 * 180.30198 * 9 8 6 11 11 C 1.38603 * 120.15011 * 359.71084 * 10 9 8 12 12 F 1.35099 * 119.89092 * 180.02562 * 11 10 9 13 13 C 1.38837 * 120.21942 * 0.03434 * 11 10 9 14 14 F 1.35101 * 119.96132 * 179.97438 * 13 11 10 15 15 C 1.38059 * 120.07250 * 359.95996 * 13 11 10 16 16 C 1.48153 * 104.32041 * 39.84996 * 5 4 2 17 17 C 1.54282 * 110.42850 * 122.23790 * 2 1 3 18 18 C 1.53002 * 110.34689 * 0.04182 * 17 2 1 19 19 C 1.53004 * 110.34064 * 237.89069 * 17 2 1 20 20 N 1.46504 * 109.46911 * 179.97438 * 19 17 2 21 21 C 1.36939 * 119.99528 * 179.97438 * 20 19 17 22 22 H 1.07992 * 120.00451 * 0.02562 * 21 20 19 23 23 C 1.38816 * 119.99909 * 180.02562 * 21 20 19 24 24 N 1.31615 * 120.00215 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 119.99757 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.46915 * 89.99625 * 25 23 21 27 27 H 1.48497 * 109.47074 * 209.99867 * 25 23 21 28 28 H 1.48504 * 109.47000 * 329.99934 * 25 23 21 29 29 H 1.09000 * 109.47153 * 180.71885 * 1 2 3 30 30 H 1.08996 * 109.47214 * 300.72734 * 1 2 3 31 31 H 1.09000 * 109.46955 * 60.72214 * 1 2 3 32 32 H 1.09007 * 110.40455 * 98.37472 * 4 2 1 33 33 H 1.09001 * 110.50967 * 335.99818 * 4 2 1 34 34 H 1.08001 * 120.04027 * 0.03090 * 9 8 6 35 35 H 1.08004 * 119.92509 * 179.72098 * 10 9 8 36 36 H 1.07991 * 120.07084 * 180.02562 * 15 13 11 37 37 H 1.08997 * 110.40766 * 78.93940 * 16 5 4 38 38 H 1.08998 * 110.40170 * 201.37359 * 16 5 4 39 39 H 1.09008 * 109.46553 * 60.00217 * 18 17 2 40 40 H 1.08997 * 109.47465 * 180.02562 * 18 17 2 41 41 H 1.09001 * 109.46802 * 300.00664 * 18 17 2 42 42 H 1.08992 * 109.47300 * 300.00259 * 19 17 2 43 43 H 1.09000 * 109.47137 * 60.00343 * 19 17 2 44 44 H 0.96997 * 119.99899 * 0.02562 * 20 19 17 45 45 H 0.96998 * 119.99821 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7709 -1.2252 5 7 3.2679 -1.4790 -0.7247 6 6 4.4436 -1.6617 -1.3577 7 8 4.6467 -1.1255 -2.4297 8 6 5.4856 -2.5138 -0.7490 9 6 5.1366 -3.4775 0.1996 10 6 6.1128 -4.2663 0.7697 11 6 7.4392 -4.1092 0.3992 12 9 8.3916 -4.8855 0.9610 13 6 7.7923 -3.1567 -0.5471 14 9 9.0867 -3.0076 -0.9040 15 6 6.8220 -2.3618 -1.1240 16 6 2.8813 -1.9461 0.6270 17 6 2.0685 -0.7712 1.2229 18 6 0.9099 -1.3052 2.0676 19 6 2.9688 0.1327 2.0676 20 7 3.4685 -0.6175 3.2224 21 6 4.2995 -0.0104 4.1258 22 1 4.5862 1.0215 3.9871 23 6 4.7735 -0.7213 5.2198 24 7 5.5726 -0.1380 6.0877 25 14 4.2781 -2.5066 5.4593 26 1 5.2582 -3.3881 4.7756 27 1 4.2548 -2.8234 6.9099 28 1 2.9275 -2.7271 4.8826 29 1 -0.3633 -1.0276 0.0129 30 1 -0.3633 0.5251 0.8834 31 1 -0.3633 0.5026 -0.8964 32 1 2.3384 -0.0776 -2.0213 33 1 1.3250 -1.4857 -1.5816 34 1 4.1037 -3.6016 0.4894 35 1 5.8436 -5.0085 1.5067 36 1 7.0966 -1.6212 -1.8604 37 1 2.2640 -2.8418 0.5574 38 1 3.7682 -2.1405 1.2300 39 1 0.2998 -1.9772 1.4639 40 1 1.3058 -1.8465 2.9268 41 1 0.2985 -0.4718 2.4138 42 1 3.8097 0.4741 1.4641 43 1 2.3969 0.9936 2.4139 44 1 3.2113 -1.5445 3.3468 45 1 5.9035 -0.6347 6.8523 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001181736786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:19 Heat of formation + Delta-G solvation = -67.092296 kcal Electronic energy + Delta-G solvation = -30506.252547 eV Core-core repulsion = 26160.771817 eV Total energy + Delta-G solvation = -4345.480730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.60711 -48.67699 -40.83302 -39.13607 -37.85165 -34.97940 -33.64975 -31.88694 -31.27257 -30.80638 -29.99874 -27.33925 -26.22977 -25.96726 -23.92815 -23.35563 -22.86896 -21.10994 -20.06994 -18.87159 -18.12629 -17.95625 -17.54337 -17.29468 -16.47990 -16.17611 -15.78671 -15.54673 -15.12433 -15.07190 -14.73452 -14.60877 -14.27647 -14.16484 -14.04340 -13.89109 -13.42492 -13.24604 -13.01843 -12.85724 -12.65025 -12.26686 -12.16705 -12.03379 -11.80717 -11.63309 -11.56359 -11.49298 -11.33112 -10.98089 -10.65123 -10.40473 -10.32439 -10.13059 -10.05108 -9.61996 -9.34585 -8.97405 -8.96340 -8.79195 -7.30268 -5.82094 -3.18276 0.35584 0.78209 2.48103 2.70653 3.26086 3.28090 3.36860 3.37851 3.56186 4.11703 4.17515 4.31745 4.43850 4.51307 4.54617 4.69247 4.72778 4.83799 5.04694 5.16819 5.30307 5.31539 5.40204 5.46591 5.48515 5.51089 5.54470 5.57839 5.59276 5.64622 5.69052 5.71224 5.73661 5.84973 5.94059 6.04570 6.10243 6.18160 6.29072 6.44144 6.45955 6.58171 6.65343 7.37712 7.93420 7.97560 8.36273 9.14542 9.86146 10.05339 11.36449 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007642 B = 0.005864 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3663.186024 B = 4774.021045 C = 7453.004976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.085 0.915 4 C 0.112 3.888 5 N -0.612 5.612 6 C 0.587 3.413 7 O -0.537 6.537 8 C -0.110 4.110 9 C -0.074 4.074 10 C -0.129 4.129 11 C 0.094 3.906 12 F -0.123 7.123 13 C 0.062 3.938 14 F -0.125 7.125 15 C -0.067 4.067 16 C 0.090 3.910 17 C -0.080 4.080 18 C -0.137 4.137 19 C 0.172 3.828 20 N -0.753 5.753 21 C -0.243 4.243 22 H 0.089 0.911 23 C 0.006 3.994 24 N -0.932 5.932 25 Si 0.877 3.123 26 H -0.283 1.283 27 H -0.290 1.290 28 H -0.276 1.276 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.028 0.972 43 H 0.032 0.968 44 H 0.359 0.641 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.703 -7.781 -14.857 18.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.104 0.896 4 C -0.010 4.010 5 N -0.344 5.344 6 C 0.376 3.624 7 O -0.415 6.415 8 C -0.113 4.113 9 C -0.092 4.092 10 C -0.147 4.147 11 C 0.074 3.926 12 F -0.102 7.102 13 C 0.042 3.958 14 F -0.103 7.103 15 C -0.087 4.087 16 C -0.033 4.033 17 C -0.081 4.081 18 C -0.195 4.195 19 C 0.044 3.956 20 N -0.399 5.399 21 C -0.373 4.373 22 H 0.107 0.893 23 C -0.190 4.190 24 N -0.580 5.580 25 Si 0.707 3.293 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.202 1.202 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.172 0.828 35 H 0.171 0.829 36 H 0.175 0.825 37 H 0.094 0.906 38 H 0.118 0.882 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.046 0.954 43 H 0.050 0.950 44 H 0.193 0.807 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.256 -7.352 -15.366 18.515 hybrid contribution 0.262 -1.370 0.616 1.525 sum -6.994 -8.722 -14.751 18.508 Atomic orbital electron populations 1.21890 0.93951 1.02137 1.01952 1.22138 0.96161 1.00021 0.93380 0.89616 1.22455 0.85648 0.95751 0.97179 1.48703 1.12627 1.55256 1.17800 1.17536 0.80258 0.80460 0.84125 1.90790 1.78997 1.49697 1.22013 1.19652 0.93360 0.98814 0.99476 1.21734 1.01039 0.93187 0.93239 1.21074 0.89958 1.01986 1.01717 1.17931 0.87033 0.92276 0.95370 1.91553 1.62907 1.72458 1.83259 1.17430 0.79789 0.99269 0.99334 1.91550 1.33214 1.94913 1.90650 1.21059 0.90530 0.98208 0.98891 1.23177 1.00434 0.96921 0.82733 1.21863 0.96012 0.95231 0.94992 1.21919 0.96848 1.01269 0.99416 1.20654 0.94133 0.92949 0.87827 1.42728 1.58726 1.11586 1.26861 1.19028 1.19629 0.97602 1.01074 0.89279 1.24661 0.99484 0.97517 0.97290 1.69688 1.37211 1.36221 1.14867 0.86662 0.78115 0.86962 0.77519 1.20920 1.21651 1.20243 0.92102 0.91662 0.92809 0.89807 0.90869 0.82834 0.82876 0.82494 0.90616 0.88159 0.92685 0.91970 0.91581 0.95442 0.95047 0.80725 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 7.93 37.16 0.29 -0.87 16 2 C -0.10 -1.03 3.30 -89.22 -0.29 -1.32 16 3 H 0.09 0.98 7.71 -51.93 -0.40 0.58 16 4 C 0.11 1.20 6.61 -2.41 -0.02 1.18 16 5 N -0.61 -7.79 3.31 -170.20 -0.56 -8.35 16 6 C 0.59 8.59 7.72 -12.39 -0.10 8.49 16 7 O -0.54 -9.18 16.80 5.30 0.09 -9.09 16 8 C -0.11 -1.49 5.75 -104.97 -0.60 -2.09 16 9 C -0.07 -0.89 7.97 -39.19 -0.31 -1.20 16 10 C -0.13 -1.56 10.01 -39.59 -0.40 -1.95 16 11 C 0.09 1.29 7.31 -39.22 -0.29 1.00 16 12 F -0.12 -1.77 17.17 2.25 0.04 -1.73 16 13 C 0.06 0.86 7.30 -39.43 -0.29 0.57 16 14 F -0.12 -1.79 17.18 2.25 0.04 -1.75 16 15 C -0.07 -0.91 9.56 -39.13 -0.37 -1.28 16 16 C 0.09 1.09 3.95 -2.19 -0.01 1.08 16 17 C -0.08 -1.02 0.73 -152.89 -0.11 -1.13 16 18 C -0.14 -1.60 7.11 37.16 0.26 -1.33 16 19 C 0.17 3.01 4.96 -4.04 -0.02 2.99 16 20 N -0.75 -16.20 4.60 -59.91 -0.28 -16.47 16 21 C -0.24 -6.57 10.47 -15.06 -0.16 -6.73 16 22 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 23 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 24 N -0.93 -28.67 13.97 55.49 0.78 -27.89 16 25 Si 0.88 20.73 27.74 -169.99 -4.71 16.02 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.28 -5.91 6.52 56.52 0.37 -5.54 16 29 H 0.06 0.45 6.62 -51.93 -0.34 0.11 16 30 H 0.06 0.56 6.99 -51.93 -0.36 0.19 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.95 7.84 -51.92 -0.41 0.54 16 33 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 34 H 0.15 1.56 4.84 -52.49 -0.25 1.30 16 35 H 0.15 1.53 8.06 -52.48 -0.42 1.10 16 36 H 0.16 2.00 7.80 -52.49 -0.41 1.59 16 37 H 0.08 0.72 7.55 -51.93 -0.39 0.33 16 38 H 0.10 1.41 4.78 -51.93 -0.25 1.16 16 39 H 0.05 0.50 6.68 -51.92 -0.35 0.15 16 40 H 0.06 0.85 6.74 -51.93 -0.35 0.50 16 41 H 0.07 0.76 6.89 -51.93 -0.36 0.40 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.36 7.35 3.85 -40.82 -0.16 7.19 16 45 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 362.72 15.07 5.47 5.47 Total: -1.00 -32.19 362.72 -7.37 -39.56 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.72 Total: 6.75 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -2.50 Total: -2.50 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: -0.06 Total: -52.72 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.08 Total: -3.48 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.71 Total: 16.02 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.19 -7.37 -39.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181736786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.529 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds