Wall clock time and date at job start Tue Mar 31 2020 20:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.30589 * 2 1 4 4 C 1.54385 * 110.34286 * 237.82299 * 2 1 3 5 5 N 1.48148 * 104.61981 * 217.15769 * 4 2 1 6 6 C 1.34772 * 127.84185 * 219.58910 * 5 4 2 7 7 O 1.21573 * 120.00110 * 6.07934 * 6 5 4 8 8 C 1.47726 * 120.00352 * 186.08592 * 6 5 4 9 9 C 1.39657 * 120.10673 * 22.06970 * 8 6 5 10 10 C 1.37849 * 119.92102 * 180.30198 * 9 8 6 11 11 C 1.38603 * 120.15011 * 359.71084 * 10 9 8 12 12 F 1.35099 * 119.89092 * 180.02562 * 11 10 9 13 13 C 1.38837 * 120.21942 * 0.03434 * 11 10 9 14 14 F 1.35101 * 119.96132 * 179.97438 * 13 11 10 15 15 C 1.38059 * 120.07250 * 359.95996 * 13 11 10 16 16 C 1.48153 * 104.32041 * 39.84996 * 5 4 2 17 17 C 1.54282 * 110.42850 * 122.23790 * 2 1 3 18 18 C 1.53002 * 110.34689 * 0.04182 * 17 2 1 19 19 C 1.53004 * 110.34064 * 237.89069 * 17 2 1 20 20 N 1.46504 * 109.46911 * 179.97438 * 19 17 2 21 21 C 1.36939 * 119.99528 * 179.97438 * 20 19 17 22 22 H 1.07992 * 120.00451 * 0.02562 * 21 20 19 23 23 C 1.38816 * 119.99909 * 180.02562 * 21 20 19 24 24 N 1.31615 * 120.00215 * 179.97438 * 23 21 20 25 25 Si 1.86807 * 119.99757 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.46915 * 89.99625 * 25 23 21 27 27 H 1.48497 * 109.47074 * 209.99867 * 25 23 21 28 28 H 1.48504 * 109.47000 * 329.99934 * 25 23 21 29 29 H 1.09000 * 109.47153 * 180.71885 * 1 2 3 30 30 H 1.08996 * 109.47214 * 300.72734 * 1 2 3 31 31 H 1.09000 * 109.46955 * 60.72214 * 1 2 3 32 32 H 1.09007 * 110.40455 * 98.37472 * 4 2 1 33 33 H 1.09001 * 110.50967 * 335.99818 * 4 2 1 34 34 H 1.08001 * 120.04027 * 0.03090 * 9 8 6 35 35 H 1.08004 * 119.92509 * 179.72098 * 10 9 8 36 36 H 1.07991 * 120.07084 * 180.02562 * 15 13 11 37 37 H 1.08997 * 110.40766 * 78.93940 * 16 5 4 38 38 H 1.08998 * 110.40170 * 201.37359 * 16 5 4 39 39 H 1.09008 * 109.46553 * 60.00217 * 18 17 2 40 40 H 1.08997 * 109.47465 * 180.02562 * 18 17 2 41 41 H 1.09001 * 109.46802 * 300.00664 * 18 17 2 42 42 H 1.08992 * 109.47300 * 300.00259 * 19 17 2 43 43 H 1.09000 * 109.47137 * 60.00343 * 19 17 2 44 44 H 0.96997 * 119.99899 * 0.02562 * 20 19 17 45 45 H 0.96998 * 119.99821 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7709 -1.2252 5 7 3.2679 -1.4790 -0.7247 6 6 4.4436 -1.6617 -1.3577 7 8 4.6467 -1.1255 -2.4297 8 6 5.4856 -2.5138 -0.7490 9 6 5.1366 -3.4775 0.1996 10 6 6.1128 -4.2663 0.7697 11 6 7.4392 -4.1092 0.3992 12 9 8.3916 -4.8855 0.9610 13 6 7.7923 -3.1567 -0.5471 14 9 9.0867 -3.0076 -0.9040 15 6 6.8220 -2.3618 -1.1240 16 6 2.8813 -1.9461 0.6270 17 6 2.0685 -0.7712 1.2229 18 6 0.9099 -1.3052 2.0676 19 6 2.9688 0.1327 2.0676 20 7 3.4685 -0.6175 3.2224 21 6 4.2995 -0.0104 4.1258 22 1 4.5862 1.0215 3.9871 23 6 4.7735 -0.7213 5.2198 24 7 5.5726 -0.1380 6.0877 25 14 4.2781 -2.5066 5.4593 26 1 5.2582 -3.3881 4.7756 27 1 4.2548 -2.8234 6.9099 28 1 2.9275 -2.7271 4.8826 29 1 -0.3633 -1.0276 0.0129 30 1 -0.3633 0.5251 0.8834 31 1 -0.3633 0.5026 -0.8964 32 1 2.3384 -0.0776 -2.0213 33 1 1.3250 -1.4857 -1.5816 34 1 4.1037 -3.6016 0.4894 35 1 5.8436 -5.0085 1.5067 36 1 7.0966 -1.6212 -1.8604 37 1 2.2640 -2.8418 0.5574 38 1 3.7682 -2.1405 1.2300 39 1 0.2998 -1.9772 1.4639 40 1 1.3058 -1.8465 2.9268 41 1 0.2985 -0.4718 2.4138 42 1 3.8097 0.4741 1.4641 43 1 2.3969 0.9936 2.4139 44 1 3.2113 -1.5445 3.3468 45 1 5.9035 -0.6347 6.8523 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181736786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:18 Heat of formation + Delta-G solvation = -86.569061 kcal Electronic energy + Delta-G solvation = -30507.097123 eV Core-core repulsion = 26160.771817 eV Total energy + Delta-G solvation = -4346.325306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.69575 -49.77236 -41.86131 -40.16586 -38.95647 -36.57901 -34.81564 -33.54866 -32.28472 -32.00076 -31.21219 -28.33944 -27.63135 -26.82268 -25.18176 -24.47069 -24.21218 -22.37511 -21.11080 -20.24273 -19.44525 -19.06565 -18.80249 -18.34817 -17.56593 -17.26667 -16.82568 -16.60479 -16.55733 -16.26783 -16.17685 -15.73191 -15.34927 -15.29873 -15.24867 -15.07679 -14.60904 -14.51847 -14.23805 -13.99824 -13.88670 -13.49154 -13.30020 -13.01392 -12.97575 -12.89600 -12.74520 -12.55206 -12.46179 -12.23150 -12.05829 -11.83566 -11.58440 -11.30180 -11.23279 -11.15846 -10.93942 -10.35926 -10.02067 -9.78479 -9.26951 -7.99310 -5.33502 -0.68611 -0.22147 1.37575 1.41043 1.45336 1.53062 1.71076 2.33765 2.52375 2.54202 3.08695 3.15499 3.31658 3.34650 3.42922 3.57433 3.70693 3.75661 3.83602 3.96621 4.18350 4.32751 4.35369 4.37453 4.51594 4.55476 4.62249 4.64994 4.69674 4.71776 4.78392 4.84287 4.87722 4.91998 5.03358 5.07974 5.14466 5.25358 5.32530 5.39169 5.44736 5.46962 5.68056 5.78497 6.22972 6.33891 6.89828 7.11769 7.84847 8.08208 9.22621 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007642 B = 0.005864 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3663.186024 B = 4774.021045 C = 7453.004976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.090 4.090 3 H 0.067 0.933 4 C 0.111 3.889 5 N -0.610 5.610 6 C 0.582 3.418 7 O -0.572 6.572 8 C -0.121 4.121 9 C -0.065 4.065 10 C -0.124 4.124 11 C 0.082 3.918 12 F -0.130 7.130 13 C 0.049 3.951 14 F -0.133 7.133 15 C -0.074 4.074 16 C 0.086 3.914 17 C -0.073 4.073 18 C -0.134 4.134 19 C 0.171 3.829 20 N -0.746 5.746 21 C -0.234 4.234 22 H 0.044 0.956 23 C -0.066 4.066 24 N -0.988 5.988 25 Si 0.948 3.052 26 H -0.268 1.268 27 H -0.303 1.303 28 H -0.233 1.233 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.181 0.819 35 H 0.182 0.818 36 H 0.155 0.845 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.003 0.997 43 H 0.022 0.978 44 H 0.370 0.630 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.166 -10.692 -15.596 21.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.011 4.011 5 N -0.341 5.341 6 C 0.372 3.628 7 O -0.453 6.453 8 C -0.125 4.125 9 C -0.083 4.083 10 C -0.142 4.142 11 C 0.062 3.938 12 F -0.108 7.108 13 C 0.028 3.972 14 F -0.112 7.112 15 C -0.094 4.094 16 C -0.036 4.036 17 C -0.074 4.074 18 C -0.192 4.192 19 C 0.045 3.955 20 N -0.393 5.393 21 C -0.365 4.365 22 H 0.062 0.938 23 C -0.257 4.257 24 N -0.639 5.639 25 Si 0.773 3.227 26 H -0.194 1.194 27 H -0.230 1.230 28 H -0.157 1.157 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.124 0.876 34 H 0.198 0.802 35 H 0.199 0.801 36 H 0.173 0.827 37 H 0.139 0.861 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.021 0.979 43 H 0.040 0.960 44 H 0.206 0.794 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.779 -10.261 -16.145 21.957 hybrid contribution 1.354 -0.276 0.828 1.611 sum -9.425 -10.537 -15.317 20.844 Atomic orbital electron populations 1.21869 0.91398 1.03593 1.02507 1.22084 0.98101 0.98695 0.92148 0.91471 1.22654 0.85381 0.96255 0.96759 1.48771 1.12532 1.54768 1.17994 1.17694 0.80845 0.80401 0.83881 1.90768 1.79663 1.51259 1.23599 1.19745 0.93009 0.99480 1.00233 1.22020 1.02291 0.91962 0.91994 1.21418 0.88946 1.02137 1.01693 1.18177 0.87773 0.92320 0.95544 1.91534 1.63332 1.72594 1.83350 1.17566 0.79565 0.99975 1.00054 1.91521 1.33750 1.95049 1.90831 1.21098 0.90909 0.98320 0.99086 1.23351 1.00255 0.98116 0.81839 1.21759 0.95681 0.94883 0.95111 1.21933 0.96371 1.01797 0.99058 1.20730 0.94085 0.93760 0.86951 1.42578 1.57790 1.12124 1.26771 1.18940 1.19637 0.95972 1.01920 0.93770 1.25589 0.99888 1.03266 0.96994 1.69915 1.39496 1.38636 1.15853 0.85521 0.80152 0.80049 0.76929 1.19387 1.23000 1.15689 0.90073 0.91982 0.91559 0.90958 0.87578 0.80227 0.80058 0.82705 0.86080 0.89948 0.88774 0.93620 0.91663 0.97854 0.96046 0.79446 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 7.93 71.98 0.57 -1.06 16 2 C -0.09 -1.65 3.30 -9.89 -0.03 -1.68 16 3 H 0.07 1.48 7.71 -2.39 -0.02 1.46 16 4 C 0.11 2.02 6.61 86.53 0.57 2.59 16 5 N -0.61 -13.94 3.31 -810.66 -2.68 -16.62 16 6 C 0.58 16.43 7.72 86.75 0.67 17.10 16 7 O -0.57 -19.60 16.80 -3.95 -0.07 -19.67 16 8 C -0.12 -3.18 5.75 -20.09 -0.12 -3.29 16 9 C -0.06 -1.37 7.97 22.52 0.18 -1.19 16 10 C -0.12 -2.66 10.01 22.26 0.22 -2.43 16 11 C 0.08 2.17 7.31 22.50 0.16 2.34 16 12 F -0.13 -3.61 17.17 44.97 0.77 -2.84 16 13 C 0.05 1.36 7.30 22.37 0.16 1.52 16 14 F -0.13 -3.93 17.18 44.97 0.77 -3.15 16 15 C -0.07 -2.04 9.56 22.56 0.22 -1.83 16 16 C 0.09 1.73 3.95 86.67 0.34 2.08 16 17 C -0.07 -1.63 0.73 -51.13 -0.04 -1.67 16 18 C -0.13 -2.48 7.11 71.98 0.51 -1.96 16 19 C 0.17 5.93 4.96 86.38 0.43 6.35 16 20 N -0.75 -31.29 4.60 -343.45 -1.58 -32.87 16 21 C -0.23 -12.87 10.47 84.03 0.88 -11.99 16 22 H 0.04 2.77 8.06 -2.91 -0.02 2.74 16 23 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 24 N -0.99 -62.78 13.97 21.65 0.30 -62.47 16 25 Si 0.95 41.54 27.74 68.60 1.90 43.44 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 28 H -0.23 -8.50 6.52 99.48 0.65 -7.85 16 29 H 0.08 0.68 6.62 -2.39 -0.02 0.67 16 30 H 0.06 0.82 6.99 -2.39 -0.02 0.80 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 1.52 7.84 -2.38 -0.02 1.50 16 33 H 0.11 1.31 7.87 -2.39 -0.02 1.29 16 34 H 0.18 2.78 4.84 -2.91 -0.01 2.77 16 35 H 0.18 2.84 8.06 -2.91 -0.02 2.81 16 36 H 0.16 4.17 7.80 -2.92 -0.02 4.15 16 37 H 0.12 1.45 7.55 -2.39 -0.02 1.44 16 38 H 0.08 2.01 4.78 -2.39 -0.01 2.00 16 39 H 0.09 1.05 6.68 -2.38 -0.02 1.03 16 40 H 0.04 1.01 6.74 -2.39 -0.02 1.00 16 41 H 0.06 1.24 6.89 -2.39 -0.02 1.22 16 42 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 43 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.37 13.95 3.85 -92.71 -0.36 13.60 16 45 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -74.57 362.72 5.25 -69.32 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.63 Total: 23.30 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 5.20 Total: 1.56 kcal Atomic # 7 Polarization: -108.01 SS G_CDS: -3.96 Total: -111.97 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.07 Total: -19.67 kcal Atomic # 9 Polarization: -7.54 SS G_CDS: 1.54 Total: -5.99 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.90 Total: 43.44 kcal Total: -74.57 5.25 -69.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181736786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.250 kcal (2) G-P(sol) polarization free energy of solvation -74.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds