Wall clock time and date at job start Tue Mar 31 2020 20:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.30697 * 2 1 4 4 C 1.54382 * 110.34403 * 237.70713 * 2 1 3 5 5 N 1.48145 * 104.61946 * 264.99619 * 4 2 1 6 6 C 1.34778 * 127.83671 * 140.41510 * 5 4 2 7 7 O 1.21570 * 119.99817 * 354.66199 * 6 5 4 8 8 C 1.47695 * 120.00225 * 174.65776 * 6 5 4 9 9 C 1.39686 * 120.15501 * 325.19621 * 8 6 5 10 10 C 1.37840 * 119.92718 * 179.76516 * 9 8 6 11 11 C 1.38453 * 120.23829 * 0.50611 * 10 9 8 12 12 C 1.38381 * 120.31408 * 359.74811 * 11 10 9 13 13 F 1.35099 * 119.95968 * 180.02562 * 12 11 10 14 14 C 1.38543 * 120.07295 * 359.97438 * 12 11 10 15 15 F 1.35090 * 120.12159 * 179.97438 * 14 12 11 16 16 C 1.48142 * 104.32461 * 320.41464 * 5 4 2 17 17 C 1.54286 * 110.34002 * 122.17066 * 2 1 3 18 18 C 1.53003 * 110.34316 * 359.89937 * 17 2 1 19 19 C 1.53002 * 110.34416 * 237.74108 * 17 2 1 20 20 N 1.46498 * 109.47344 * 179.97438 * 19 17 2 21 21 C 1.36935 * 120.00172 * 179.97438 * 20 19 17 22 22 H 1.07996 * 119.99880 * 0.02562 * 21 20 19 23 23 C 1.38810 * 119.99737 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00339 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99662 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46796 * 90.00517 * 25 23 21 27 27 H 1.48501 * 109.46963 * 209.99792 * 25 23 21 28 28 H 1.48494 * 109.47082 * 330.00156 * 25 23 21 29 29 H 1.09000 * 109.47848 * 297.83209 * 1 2 3 30 30 H 1.09008 * 109.47081 * 57.83036 * 1 2 3 31 31 H 1.08995 * 109.47096 * 177.82330 * 1 2 3 32 32 H 1.09005 * 110.40711 * 23.78738 * 4 2 1 33 33 H 1.09007 * 110.40503 * 146.21321 * 4 2 1 34 34 H 1.08004 * 120.03627 * 0.02562 * 9 8 6 35 35 H 1.08002 * 119.88139 * 180.25631 * 10 9 8 36 36 H 1.07998 * 119.84019 * 179.71894 * 11 10 9 37 37 H 1.09002 * 110.40817 * 280.80093 * 16 5 4 38 38 H 1.09000 * 110.40669 * 158.36823 * 16 5 4 39 39 H 1.09002 * 109.46564 * 298.51975 * 18 17 2 40 40 H 1.08998 * 109.47465 * 58.51942 * 18 17 2 41 41 H 1.08996 * 109.46741 * 178.52711 * 18 17 2 42 42 H 1.09009 * 109.46841 * 60.00352 * 19 17 2 43 43 H 1.08993 * 109.47179 * 300.00466 * 19 17 2 44 44 H 0.97008 * 119.99693 * 0.27875 * 20 19 17 45 45 H 0.97003 * 119.99556 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7733 -1.2236 5 7 2.3139 -2.1446 -0.7203 6 6 2.0774 -3.3119 -1.3511 7 8 1.5161 -3.3173 -2.4294 8 6 2.5001 -4.5846 -0.7323 9 6 3.6758 -4.6427 0.0198 10 6 4.0634 -5.8318 0.5993 11 6 3.2970 -6.9724 0.4301 12 6 2.1333 -6.9273 -0.3174 13 9 1.3906 -8.0444 -0.4774 14 6 1.7285 -5.7377 -0.9008 15 9 0.5929 -5.6927 -1.6311 16 6 2.8801 -1.9416 0.6335 17 6 2.0663 -0.7703 1.2245 18 6 0.9060 -1.2992 2.0701 19 6 2.9691 0.1328 2.0674 20 7 3.4666 -0.6165 3.2238 21 6 4.2994 -0.0100 4.1259 22 1 4.5891 1.0208 3.9850 23 6 4.7712 -0.7202 5.2213 24 7 4.4185 -1.9766 5.3926 25 14 5.9067 0.1075 6.4523 26 1 5.0973 0.7400 7.5247 27 1 6.8130 -0.9063 7.0490 28 1 6.7122 1.1464 5.7618 29 1 -0.3635 0.4798 0.9087 30 1 -0.3634 0.5472 -0.8700 31 1 -0.3633 -1.0269 -0.0390 32 1 1.3223 -0.7890 -2.0198 33 1 2.9950 -0.3257 -1.5789 34 1 4.2782 -3.7559 0.1507 35 1 4.9704 -5.8749 1.1841 36 1 3.6091 -7.9017 0.8832 37 1 3.9354 -1.6764 0.5683 38 1 2.7494 -2.8387 1.2386 39 1 0.3122 -0.4617 2.4364 40 1 0.2792 -1.9500 1.4605 41 1 1.3002 -1.8624 2.9159 42 1 2.3997 0.9961 2.4119 43 1 3.8110 0.4705 1.4632 44 1 3.2096 -1.5436 3.3481 45 1 4.7480 -2.4727 6.1583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182409617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:23 Heat of formation + Delta-G solvation = -77.924672 kcal Electronic energy + Delta-G solvation = -30337.145993 eV Core-core repulsion = 25991.195535 eV Total energy + Delta-G solvation = -4345.950458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.60429 -48.66937 -40.65759 -39.04776 -37.90249 -34.83063 -33.37473 -31.88413 -31.18893 -30.56964 -29.65374 -27.55358 -25.74007 -25.71323 -24.22836 -23.12362 -22.94424 -21.21619 -20.00989 -18.69754 -18.13208 -17.68010 -17.19198 -17.11646 -16.62196 -16.25218 -15.92031 -15.37301 -15.11349 -15.05887 -14.63389 -14.46216 -14.26508 -14.04380 -13.99533 -13.59419 -13.14298 -13.12487 -13.06635 -12.67229 -12.42338 -12.32125 -12.17183 -11.99574 -11.81311 -11.54556 -11.38593 -11.23787 -11.06017 -10.87720 -10.48562 -10.38469 -10.26594 -10.07789 -9.92939 -9.68161 -9.33661 -8.98081 -8.94739 -8.69811 -7.00253 -5.84686 -3.13067 0.39027 0.69931 2.52351 2.74961 3.27360 3.38236 3.44340 3.45134 3.55263 4.09513 4.17710 4.46227 4.47591 4.52654 4.63787 4.72665 4.82349 4.89952 5.27336 5.27707 5.31653 5.45054 5.46303 5.51195 5.59462 5.64015 5.68896 5.73394 5.77478 5.83594 5.89525 5.92099 5.94610 5.98047 6.05754 6.16872 6.22131 6.36872 6.43142 6.50723 6.60745 6.69581 6.78091 7.45679 7.63641 8.01429 8.34329 9.46278 10.02209 10.37114 11.38001 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010726 B = 0.003891 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.879746 B = 7194.123463 C = 9103.528431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.090 0.910 4 C 0.111 3.889 5 N -0.611 5.611 6 C 0.581 3.419 7 O -0.531 6.531 8 C -0.138 4.138 9 C -0.064 4.064 10 C -0.100 4.100 11 C -0.102 4.102 12 C 0.057 3.943 13 F -0.127 7.127 14 C 0.118 3.882 15 F -0.112 7.112 16 C 0.106 3.894 17 C -0.074 4.074 18 C -0.134 4.134 19 C 0.167 3.833 20 N -0.730 5.730 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.024 0.976 43 H 0.022 0.978 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.313 -5.156 -11.825 13.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.117 4.117 3 H 0.108 0.892 4 C -0.011 4.011 5 N -0.344 5.344 6 C 0.370 3.630 7 O -0.408 6.408 8 C -0.142 4.142 9 C -0.083 4.083 10 C -0.119 4.119 11 C -0.121 4.121 12 C 0.037 3.963 13 F -0.105 7.105 14 C 0.096 3.904 15 F -0.090 7.090 16 C -0.016 4.016 17 C -0.076 4.076 18 C -0.191 4.191 19 C 0.039 3.961 20 N -0.375 5.375 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.207 4.207 24 N -0.582 5.582 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.168 0.832 35 H 0.169 0.831 36 H 0.169 0.831 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.040 0.960 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.609 -5.172 -12.420 13.929 hybrid contribution 0.275 -0.090 0.798 0.849 sum -3.335 -5.262 -11.621 13.186 Atomic orbital electron populations 1.21906 0.94474 1.01959 1.01567 1.22151 0.96425 0.99512 0.93627 0.89205 1.22453 1.01017 0.80504 0.97141 1.48835 1.62357 1.05115 1.18108 1.17415 0.79043 0.82056 0.84504 1.90824 1.42024 1.86607 1.21369 1.19842 0.97836 0.93017 1.03471 1.21569 0.94244 0.99598 0.92887 1.21136 1.00550 0.91064 0.99103 1.21310 0.92461 1.01051 0.97321 1.17515 0.93596 0.81946 1.03259 1.91541 1.75631 1.49151 1.94223 1.17572 0.85154 0.92659 0.94987 1.91586 1.46571 1.96814 1.74034 1.22842 0.97885 0.99486 0.81417 1.21714 0.96199 0.94993 0.94658 1.21880 0.96876 1.00966 0.99370 1.20729 0.93669 0.93051 0.88619 1.42386 1.57421 1.12820 1.24911 1.19208 1.20256 0.95831 1.01783 0.91226 1.24694 1.01062 0.96086 0.98843 1.69643 1.49076 1.08492 1.30954 0.86229 0.80396 0.78204 0.81583 1.21759 1.21803 1.20790 0.91871 0.93078 0.92453 0.89853 0.90767 0.83164 0.83095 0.83141 0.89751 0.89601 0.92199 0.93381 0.91448 0.95791 0.96039 0.78145 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 7.92 37.16 0.29 -1.31 16 2 C -0.10 -1.16 3.31 -89.22 -0.30 -1.45 16 3 H 0.09 0.98 7.71 -51.93 -0.40 0.58 16 4 C 0.11 1.34 6.61 -2.41 -0.02 1.33 16 5 N -0.61 -8.33 3.31 -170.47 -0.56 -8.89 16 6 C 0.58 8.97 7.48 -12.40 -0.09 8.88 16 7 O -0.53 -9.79 16.31 5.30 0.09 -9.70 16 8 C -0.14 -1.88 5.50 -104.92 -0.58 -2.46 16 9 C -0.06 -0.73 7.91 -39.19 -0.31 -1.04 16 10 C -0.10 -0.96 10.03 -39.65 -0.40 -1.36 16 11 C -0.10 -0.99 10.01 -39.45 -0.40 -1.38 16 12 C 0.06 0.70 7.30 -39.42 -0.29 0.41 16 13 F -0.13 -1.62 17.18 2.25 0.04 -1.58 16 14 C 0.12 1.67 7.25 -38.90 -0.28 1.39 16 15 F -0.11 -1.81 16.01 2.25 0.04 -1.78 16 16 C 0.11 1.45 3.87 -2.41 -0.01 1.44 16 17 C -0.07 -1.05 0.73 -153.10 -0.11 -1.17 16 18 C -0.13 -1.98 7.07 37.16 0.26 -1.72 16 19 C 0.17 2.94 4.87 -4.04 -0.02 2.92 16 20 N -0.73 -16.40 5.13 -59.91 -0.31 -16.71 16 21 C -0.24 -6.19 9.99 -15.06 -0.15 -6.34 16 22 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 24 N -0.93 -26.21 13.06 55.49 0.72 -25.48 16 25 Si 0.90 21.24 29.55 -169.99 -5.02 16.22 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H 0.06 0.70 6.84 -51.93 -0.36 0.35 16 30 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.06 0.72 6.76 -51.93 -0.35 0.37 16 32 H 0.08 1.04 7.56 -51.93 -0.39 0.65 16 33 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.15 1.59 6.18 -52.48 -0.32 1.27 16 35 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.08 1.16 7.57 -51.93 -0.39 0.77 16 38 H 0.09 1.22 6.11 -51.93 -0.32 0.90 16 39 H 0.06 0.86 6.89 -51.93 -0.36 0.50 16 40 H 0.05 0.67 6.71 -51.93 -0.35 0.32 16 41 H 0.07 1.15 6.79 -51.93 -0.35 0.80 16 42 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 43 H 0.02 0.38 8.10 -51.93 -0.42 -0.04 16 44 H 0.38 8.98 6.19 -40.82 -0.25 8.73 16 45 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 367.31 15.07 5.54 5.54 Total: -1.00 -30.80 367.31 -7.88 -38.68 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.93 Total: 5.95 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -2.48 Total: -2.25 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.15 Total: -51.09 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.07 Total: -3.36 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.80 -7.88 -38.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182409617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.242 kcal (2) G-P(sol) polarization free energy of solvation -30.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds