Wall clock time and date at job start Tue Mar 31 2020 20:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.30697 * 2 1 4 4 C 1.54382 * 110.34403 * 237.70713 * 2 1 3 5 5 N 1.48145 * 104.61946 * 264.99619 * 4 2 1 6 6 C 1.34778 * 127.83671 * 140.41510 * 5 4 2 7 7 O 1.21570 * 119.99817 * 354.66199 * 6 5 4 8 8 C 1.47695 * 120.00225 * 174.65776 * 6 5 4 9 9 C 1.39686 * 120.15501 * 325.19621 * 8 6 5 10 10 C 1.37840 * 119.92718 * 179.76516 * 9 8 6 11 11 C 1.38453 * 120.23829 * 0.50611 * 10 9 8 12 12 C 1.38381 * 120.31408 * 359.74811 * 11 10 9 13 13 F 1.35099 * 119.95968 * 180.02562 * 12 11 10 14 14 C 1.38543 * 120.07295 * 359.97438 * 12 11 10 15 15 F 1.35090 * 120.12159 * 179.97438 * 14 12 11 16 16 C 1.48142 * 104.32461 * 320.41464 * 5 4 2 17 17 C 1.54286 * 110.34002 * 122.17066 * 2 1 3 18 18 C 1.53003 * 110.34316 * 359.89937 * 17 2 1 19 19 C 1.53002 * 110.34416 * 237.74108 * 17 2 1 20 20 N 1.46498 * 109.47344 * 179.97438 * 19 17 2 21 21 C 1.36935 * 120.00172 * 179.97438 * 20 19 17 22 22 H 1.07996 * 119.99880 * 0.02562 * 21 20 19 23 23 C 1.38810 * 119.99737 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00339 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99662 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46796 * 90.00517 * 25 23 21 27 27 H 1.48501 * 109.46963 * 209.99792 * 25 23 21 28 28 H 1.48494 * 109.47082 * 330.00156 * 25 23 21 29 29 H 1.09000 * 109.47848 * 297.83209 * 1 2 3 30 30 H 1.09008 * 109.47081 * 57.83036 * 1 2 3 31 31 H 1.08995 * 109.47096 * 177.82330 * 1 2 3 32 32 H 1.09005 * 110.40711 * 23.78738 * 4 2 1 33 33 H 1.09007 * 110.40503 * 146.21321 * 4 2 1 34 34 H 1.08004 * 120.03627 * 0.02562 * 9 8 6 35 35 H 1.08002 * 119.88139 * 180.25631 * 10 9 8 36 36 H 1.07998 * 119.84019 * 179.71894 * 11 10 9 37 37 H 1.09002 * 110.40817 * 280.80093 * 16 5 4 38 38 H 1.09000 * 110.40669 * 158.36823 * 16 5 4 39 39 H 1.09002 * 109.46564 * 298.51975 * 18 17 2 40 40 H 1.08998 * 109.47465 * 58.51942 * 18 17 2 41 41 H 1.08996 * 109.46741 * 178.52711 * 18 17 2 42 42 H 1.09009 * 109.46841 * 60.00352 * 19 17 2 43 43 H 1.08993 * 109.47179 * 300.00466 * 19 17 2 44 44 H 0.97008 * 119.99693 * 0.27875 * 20 19 17 45 45 H 0.97003 * 119.99556 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7733 -1.2236 5 7 2.3139 -2.1446 -0.7203 6 6 2.0774 -3.3119 -1.3511 7 8 1.5161 -3.3173 -2.4294 8 6 2.5001 -4.5846 -0.7323 9 6 3.6758 -4.6427 0.0198 10 6 4.0634 -5.8318 0.5993 11 6 3.2970 -6.9724 0.4301 12 6 2.1333 -6.9273 -0.3174 13 9 1.3906 -8.0444 -0.4774 14 6 1.7285 -5.7377 -0.9008 15 9 0.5929 -5.6927 -1.6311 16 6 2.8801 -1.9416 0.6335 17 6 2.0663 -0.7703 1.2245 18 6 0.9060 -1.2992 2.0701 19 6 2.9691 0.1328 2.0674 20 7 3.4666 -0.6165 3.2238 21 6 4.2994 -0.0100 4.1259 22 1 4.5891 1.0208 3.9850 23 6 4.7712 -0.7202 5.2213 24 7 4.4185 -1.9766 5.3926 25 14 5.9067 0.1075 6.4523 26 1 5.0973 0.7400 7.5247 27 1 6.8130 -0.9063 7.0490 28 1 6.7122 1.1464 5.7618 29 1 -0.3635 0.4798 0.9087 30 1 -0.3634 0.5472 -0.8700 31 1 -0.3633 -1.0269 -0.0390 32 1 1.3223 -0.7890 -2.0198 33 1 2.9950 -0.3257 -1.5789 34 1 4.2782 -3.7559 0.1507 35 1 4.9704 -5.8749 1.1841 36 1 3.6091 -7.9017 0.8832 37 1 3.9354 -1.6764 0.5683 38 1 2.7494 -2.8387 1.2386 39 1 0.3122 -0.4617 2.4364 40 1 0.2792 -1.9500 1.4605 41 1 1.3002 -1.8624 2.9159 42 1 2.3997 0.9961 2.4119 43 1 3.8110 0.4705 1.4632 44 1 3.2096 -1.5436 3.3481 45 1 4.7480 -2.4727 6.1583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182409617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:22 Heat of formation + Delta-G solvation = -95.088748 kcal Electronic energy + Delta-G solvation = -30337.890283 eV Core-core repulsion = 25991.195535 eV Total energy + Delta-G solvation = -4346.694748 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.64450 -49.72253 -41.77564 -40.08446 -39.03223 -36.42187 -34.67849 -33.31299 -32.27149 -31.52775 -31.08958 -28.69837 -27.22527 -26.79487 -25.47122 -24.57722 -23.87991 -22.43794 -21.09041 -19.96099 -19.19361 -18.97607 -18.57649 -18.18310 -17.69901 -17.32893 -17.12962 -16.49009 -16.38820 -16.13173 -15.98692 -15.62605 -15.47002 -15.34205 -15.24198 -14.75531 -14.71807 -14.43283 -14.06921 -13.92871 -13.51902 -13.29972 -13.23146 -13.05567 -12.99257 -12.84798 -12.75172 -12.57622 -12.50069 -12.39036 -12.03988 -11.91191 -11.50247 -11.35804 -11.28168 -11.15635 -10.84998 -10.29064 -9.93060 -9.81491 -8.87896 -7.86343 -5.12567 -0.54964 -0.22896 1.42960 1.53543 1.55153 1.62043 1.69337 2.31363 2.59967 2.62848 3.04603 3.23765 3.43423 3.49513 3.50434 3.65804 3.71939 3.80250 4.01060 4.18016 4.24885 4.29201 4.33099 4.35995 4.55917 4.58817 4.62604 4.74086 4.77937 4.80100 4.84110 4.85267 4.94496 4.96878 5.04213 5.08682 5.10127 5.16706 5.24791 5.37521 5.42842 5.55113 5.56621 5.61075 6.30851 6.36480 6.85550 7.44840 8.19973 8.44152 9.36677 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010726 B = 0.003891 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.879746 B = 7194.123463 C = 9103.528431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 H 0.108 0.892 4 C 0.107 3.893 5 N -0.606 5.606 6 C 0.577 3.423 7 O -0.570 6.570 8 C -0.154 4.154 9 C -0.063 4.063 10 C -0.090 4.090 11 C -0.085 4.085 12 C 0.049 3.951 13 F -0.133 7.133 14 C 0.089 3.911 15 F -0.133 7.133 16 C 0.112 3.888 17 C -0.068 4.068 18 C -0.126 4.126 19 C 0.169 3.831 20 N -0.738 5.738 21 C -0.238 4.238 22 H 0.073 0.927 23 C -0.066 4.066 24 N -0.963 5.963 25 Si 0.961 3.039 26 H -0.294 1.294 27 H -0.298 1.298 28 H -0.272 1.272 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.158 0.842 35 H 0.182 0.818 36 H 0.186 0.814 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.041 0.959 42 H 0.024 0.976 43 H 0.032 0.968 44 H 0.378 0.622 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 -4.492 -11.602 12.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 H 0.126 0.874 4 C -0.014 4.014 5 N -0.337 5.337 6 C 0.367 3.633 7 O -0.450 6.450 8 C -0.158 4.158 9 C -0.082 4.082 10 C -0.107 4.107 11 C -0.103 4.103 12 C 0.029 3.971 13 F -0.111 7.111 14 C 0.068 3.932 15 F -0.112 7.112 16 C -0.010 4.010 17 C -0.069 4.069 18 C -0.183 4.183 19 C 0.042 3.958 20 N -0.382 5.382 21 C -0.370 4.370 22 H 0.091 0.909 23 C -0.259 4.259 24 N -0.614 5.614 25 Si 0.791 3.209 26 H -0.222 1.222 27 H -0.224 1.224 28 H -0.197 1.197 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.175 0.825 35 H 0.200 0.800 36 H 0.203 0.797 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.042 0.958 43 H 0.050 0.950 44 H 0.211 0.789 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.321 -4.460 -12.211 13.206 hybrid contribution -0.125 -0.261 0.724 0.779 sum -2.446 -4.720 -11.487 12.658 Atomic orbital electron populations 1.21872 0.93969 1.01244 1.02514 1.22132 0.96775 0.99965 0.91936 0.87368 1.22628 1.01942 0.79715 0.97121 1.48834 1.61562 1.05404 1.17899 1.17718 0.78511 0.82936 0.84127 1.90791 1.43977 1.87198 1.23064 1.19810 0.98994 0.92169 1.04779 1.21732 0.93325 1.00789 0.92352 1.21525 1.01121 0.90063 0.98033 1.21713 0.90701 1.02481 0.95452 1.17726 0.94439 0.81147 1.03764 1.91524 1.76011 1.49240 1.94352 1.17921 0.85221 0.93897 0.96193 1.91519 1.47792 1.96998 1.74845 1.22754 0.97934 0.99061 0.81257 1.21594 0.95424 0.94943 0.94984 1.21790 0.97099 1.00832 0.98584 1.20841 0.94291 0.93106 0.87529 1.42533 1.57032 1.12833 1.25806 1.19565 1.19567 0.95947 1.01930 0.90864 1.25341 1.03077 0.96736 1.00761 1.69771 1.50615 1.09653 1.31406 0.85326 0.78709 0.77308 0.79507 1.22178 1.22446 1.19653 0.91588 0.91431 0.94054 0.90211 0.88887 0.82497 0.80042 0.79683 0.89319 0.90220 0.91831 0.92917 0.94003 0.95803 0.95049 0.78897 0.94155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 7.92 71.98 0.57 -2.33 16 2 C -0.09 -1.92 3.31 -9.89 -0.03 -1.95 16 3 H 0.11 2.01 7.71 -2.39 -0.02 2.00 16 4 C 0.11 2.43 6.61 86.53 0.57 3.00 16 5 N -0.61 -16.10 3.31 -811.52 -2.69 -18.79 16 6 C 0.58 18.06 7.48 86.74 0.65 18.70 16 7 O -0.57 -21.66 16.31 -3.94 -0.06 -21.72 16 8 C -0.15 -4.23 5.50 -20.06 -0.11 -4.34 16 9 C -0.06 -1.36 7.91 22.53 0.18 -1.18 16 10 C -0.09 -1.48 10.03 22.23 0.22 -1.25 16 11 C -0.08 -1.42 10.01 22.36 0.22 -1.20 16 12 C 0.05 1.18 7.30 22.38 0.16 1.34 16 13 F -0.13 -3.34 17.18 44.97 0.77 -2.57 16 14 C 0.09 2.58 7.25 22.71 0.16 2.75 16 15 F -0.13 -4.56 16.01 44.97 0.72 -3.84 16 16 C 0.11 2.95 3.87 86.54 0.33 3.29 16 17 C -0.07 -1.84 0.73 -51.27 -0.04 -1.88 16 18 C -0.13 -3.66 7.07 71.98 0.51 -3.15 16 19 C 0.17 5.63 4.87 86.38 0.42 6.05 16 20 N -0.74 -32.44 5.13 -343.46 -1.76 -34.20 16 21 C -0.24 -12.01 9.99 84.03 0.84 -11.17 16 22 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 23 C -0.07 -3.51 5.50 84.86 0.47 -3.04 16 24 N -0.96 -54.01 13.06 21.65 0.28 -53.72 16 25 Si 0.96 43.12 29.55 68.60 2.03 45.15 16 26 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 27 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 28 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 29 H 0.07 1.34 6.84 -2.39 -0.02 1.33 16 30 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.04 1.00 6.76 -2.39 -0.02 0.98 16 32 H 0.08 1.91 7.56 -2.38 -0.02 1.89 16 33 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.16 3.09 6.18 -2.91 -0.02 3.07 16 35 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 36 H 0.19 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.09 2.30 7.57 -2.39 -0.02 2.28 16 38 H 0.08 2.22 6.11 -2.39 -0.01 2.21 16 39 H 0.06 1.78 6.89 -2.39 -0.02 1.76 16 40 H 0.05 1.47 6.71 -2.39 -0.02 1.45 16 41 H 0.04 1.43 6.79 -2.39 -0.02 1.41 16 42 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.03 1.02 8.10 -2.39 -0.02 1.00 16 44 H 0.38 17.56 6.19 -92.70 -0.57 16.99 16 45 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -66.84 367.31 4.89 -61.95 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.46 Total: 24.10 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 5.13 Total: 3.64 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -4.16 Total: -106.71 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.06 Total: -21.72 kcal Atomic # 9 Polarization: -7.90 SS G_CDS: 1.49 Total: -6.41 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -66.84 4.89 -61.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182409617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.138 kcal (2) G-P(sol) polarization free energy of solvation -66.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds