Wall clock time and date at job start Tue Mar 31 2020 20:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 110.30659 * 2 1 4 4 C 1.54794 * 110.61294 * 237.82806 * 2 1 3 5 5 N 1.48148 * 104.41589 * 265.17685 * 4 2 1 6 6 C 1.34784 * 127.83524 * 140.36822 * 5 4 2 7 7 O 1.21583 * 119.99445 * 175.20851 * 6 5 4 8 8 C 1.47570 * 119.99956 * 355.48444 * 6 5 4 9 9 C 1.39730 * 120.14470 * 39.66873 * 8 6 5 10 10 C 1.37734 * 119.90560 * 179.69728 * 9 8 6 11 11 C 1.38756 * 120.19039 * 0.60209 * 10 9 8 12 12 F 1.35104 * 119.85976 * 179.69885 * 11 10 9 13 13 C 1.38493 * 120.28554 * 359.67230 * 11 10 9 14 14 C 1.38195 * 120.09541 * 0.02562 * 13 11 10 15 15 F 1.35096 * 120.09929 * 180.02562 * 14 13 11 16 16 C 1.48139 * 104.32438 * 320.10721 * 5 4 2 17 17 C 1.54285 * 110.34536 * 122.17941 * 2 1 3 18 18 C 1.53000 * 110.34071 * 0.10528 * 17 2 1 19 19 C 1.52997 * 110.34318 * 237.84810 * 17 2 1 20 20 N 1.46493 * 109.47419 * 183.00803 * 19 17 2 21 21 C 1.36935 * 120.00436 * 179.97438 * 20 19 17 22 22 H 1.07998 * 119.99784 * 359.97438 * 21 20 19 23 23 C 1.38813 * 120.00347 * 180.02562 * 21 20 19 24 24 N 1.31621 * 120.00252 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99931 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47234 * 89.99581 * 25 23 21 27 27 H 1.48497 * 109.47358 * 210.00269 * 25 23 21 28 28 H 1.48506 * 109.47181 * 330.00398 * 25 23 21 29 29 H 1.09004 * 109.47086 * 297.81949 * 1 2 3 30 30 H 1.09000 * 109.47415 * 57.81922 * 1 2 3 31 31 H 1.08999 * 109.47332 * 177.82451 * 1 2 3 32 32 H 1.08999 * 110.54216 * 146.43803 * 4 2 1 33 33 H 1.09000 * 110.46534 * 23.87727 * 4 2 1 34 34 H 1.08006 * 120.04633 * 359.97438 * 9 8 6 35 35 H 1.07996 * 119.90685 * 180.30058 * 10 9 8 36 36 H 1.08002 * 119.95556 * 180.02562 * 13 11 10 37 37 H 1.09004 * 110.40783 * 158.63072 * 16 5 4 38 38 H 1.09001 * 110.40783 * 281.05951 * 16 5 4 39 39 H 1.09000 * 109.46759 * 176.99320 * 18 17 2 40 40 H 1.09007 * 109.46870 * 296.99127 * 18 17 2 41 41 H 1.09001 * 109.47419 * 56.99049 * 18 17 2 42 42 H 1.09004 * 109.47051 * 303.00862 * 19 17 2 43 43 H 1.09002 * 109.47658 * 63.00426 * 19 17 2 44 44 H 0.97008 * 120.00060 * 0.02562 * 20 19 17 45 45 H 0.97000 * 119.99599 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0749 -0.7715 -1.2264 5 7 2.3176 -2.1429 -0.7213 6 6 2.0833 -3.3101 -1.3532 7 8 2.4183 -4.3587 -0.8369 8 6 1.4258 -3.3150 -2.6743 9 6 1.7497 -2.3415 -3.6229 10 6 1.1376 -2.3544 -4.8567 11 6 0.1910 -3.3238 -5.1559 12 9 -0.4098 -3.3265 -6.3660 13 6 -0.1403 -4.2890 -4.2196 14 6 0.4712 -4.2909 -2.9802 15 9 0.1485 -5.2327 -2.0670 16 6 2.8824 -1.9401 0.6331 17 6 2.0663 -0.7704 1.2244 18 6 0.9062 -1.3039 2.0672 19 6 2.9670 0.1333 2.0687 20 7 3.5225 -0.6361 3.1847 21 6 4.3640 -0.0327 4.0807 22 1 4.6186 1.0104 3.9644 23 6 4.8907 -0.7619 5.1379 24 7 5.7000 -0.1820 5.9989 25 14 4.4510 -2.5662 5.3388 26 1 5.4324 -3.4002 4.5995 27 1 4.4814 -2.9258 6.7793 28 1 3.0894 -2.8072 4.7971 29 1 -0.3633 0.4796 0.9089 30 1 -0.3634 0.5473 -0.8698 31 1 -0.3634 -1.0269 -0.0390 32 1 3.0056 -0.3250 -1.5764 33 1 1.3350 -0.7865 -2.0267 34 1 2.4824 -1.5827 -3.3906 35 1 1.3915 -1.6049 -5.5916 36 1 -0.8775 -5.0413 -4.4582 37 1 2.7524 -2.8379 1.2374 38 1 3.9373 -1.6734 0.5690 39 1 1.2998 -1.8900 2.8976 40 1 0.3250 -0.4676 2.4560 41 1 0.2671 -1.9339 1.4484 42 1 3.7797 0.5156 1.4509 43 1 2.3830 0.9675 2.4575 44 1 3.2947 -1.5733 3.2886 45 1 6.0677 -0.6915 6.7378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183298646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:29 Heat of formation + Delta-G solvation = -95.161942 kcal Electronic energy + Delta-G solvation = -29958.550743 eV Core-core repulsion = 25611.852822 eV Total energy + Delta-G solvation = -4346.697922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.20241 -50.12630 -41.76406 -40.09072 -38.97487 -36.67668 -34.72267 -33.32546 -32.46369 -31.77808 -31.35161 -28.72046 -27.49400 -26.74252 -25.16331 -24.37694 -24.04944 -22.41088 -21.07347 -20.21439 -19.55864 -19.23042 -18.55775 -18.16973 -17.33374 -17.08138 -16.97424 -16.79652 -16.55446 -16.42675 -15.75724 -15.69536 -15.52228 -15.35128 -15.24347 -14.97056 -14.68891 -14.56287 -14.14323 -13.92673 -13.69239 -13.51371 -13.41796 -13.25206 -13.11460 -12.93605 -12.65516 -12.59515 -12.55726 -12.36788 -12.11914 -11.87400 -11.52485 -11.48293 -11.26486 -11.19390 -10.98741 -10.26121 -10.03213 -9.77057 -9.27605 -8.03952 -5.34776 -0.56155 -0.14242 1.33742 1.35893 1.41151 1.42312 1.71156 2.26523 2.44690 2.65658 3.11399 3.22136 3.28674 3.41335 3.47055 3.54364 3.74552 3.78923 3.91773 3.98123 4.20671 4.22073 4.28174 4.48376 4.50438 4.58076 4.61927 4.67246 4.72857 4.74122 4.80500 4.85235 4.86225 4.91314 4.99773 5.02588 5.05828 5.10152 5.24067 5.33926 5.40072 5.54440 5.57422 5.77293 6.21068 6.39120 6.89408 7.07910 7.85823 8.01651 9.17740 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019958 B = 0.002924 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.617191 B = 9574.307704 C =10214.852715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.112 0.888 4 C 0.092 3.908 5 N -0.607 5.607 6 C 0.572 3.428 7 O -0.582 6.582 8 C -0.184 4.184 9 C -0.023 4.023 10 C -0.146 4.146 11 C 0.153 3.847 12 F -0.125 7.125 13 C -0.194 4.194 14 C 0.155 3.845 15 F -0.137 7.137 16 C 0.116 3.884 17 C -0.072 4.072 18 C -0.130 4.130 19 C 0.170 3.830 20 N -0.759 5.759 21 C -0.223 4.223 22 H 0.066 0.934 23 C -0.058 4.058 24 N -0.981 5.981 25 Si 0.939 3.061 26 H -0.284 1.284 27 H -0.294 1.294 28 H -0.260 1.260 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.178 0.822 35 H 0.188 0.812 36 H 0.168 0.832 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.038 0.962 43 H 0.036 0.964 44 H 0.362 0.638 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.547 -0.319 -29.214 33.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.130 0.870 4 C -0.029 4.029 5 N -0.338 5.338 6 C 0.362 3.638 7 O -0.463 6.463 8 C -0.188 4.188 9 C -0.041 4.041 10 C -0.165 4.165 11 C 0.134 3.866 12 F -0.104 7.104 13 C -0.214 4.214 14 C 0.135 3.865 15 F -0.115 7.115 16 C -0.007 4.007 17 C -0.073 4.073 18 C -0.187 4.187 19 C 0.045 3.955 20 N -0.405 5.405 21 C -0.354 4.354 22 H 0.084 0.916 23 C -0.250 4.250 24 N -0.633 5.633 25 Si 0.767 3.233 26 H -0.210 1.210 27 H -0.221 1.221 28 H -0.185 1.185 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.124 0.876 33 H 0.131 0.869 34 H 0.195 0.805 35 H 0.205 0.795 36 H 0.185 0.815 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.047 0.953 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.195 0.805 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.326 -0.817 -28.927 32.746 hybrid contribution 0.089 -1.806 1.272 2.211 sum -15.238 -2.624 -27.654 31.683 Atomic orbital electron populations 1.21892 0.93296 1.01509 1.03044 1.22227 0.97174 1.00080 0.91348 0.86988 1.23238 1.03090 0.78973 0.97606 1.48877 1.61459 1.06413 1.17059 1.18027 0.78576 0.82187 0.85042 1.90833 1.54145 1.32697 1.68645 1.19932 1.02265 1.00423 0.96163 1.21465 0.97182 0.94844 0.90590 1.21507 0.96469 1.00023 0.98477 1.17595 0.93248 0.95340 0.80459 1.91578 1.81712 1.95861 1.41209 1.21089 1.05227 1.03259 0.91782 1.17513 0.95266 0.86613 0.87118 1.91555 1.91188 1.62741 1.66012 1.22375 0.97679 0.97941 0.82657 1.21658 0.95168 0.94616 0.95857 1.21861 0.97332 1.01054 0.98474 1.20905 0.94261 0.92969 0.87413 1.42829 1.56716 1.10242 1.30673 1.19063 1.17787 0.95519 1.03005 0.91600 1.25324 1.00257 1.01517 0.97912 1.69847 1.38089 1.37398 1.17926 0.85658 0.78786 0.82093 0.76739 1.21027 1.22105 1.18461 0.92115 0.90069 0.93770 0.87635 0.86873 0.80477 0.79492 0.81470 0.93187 0.90658 0.95291 0.90871 0.92229 0.94382 0.94595 0.80526 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 7.95 71.98 0.57 -1.44 16 2 C -0.09 -1.46 3.30 -9.75 -0.03 -1.50 16 3 H 0.11 1.51 7.71 -2.38 -0.02 1.50 16 4 C 0.09 1.25 4.96 86.67 0.43 1.68 16 5 N -0.61 -14.48 3.31 -810.86 -2.69 -17.17 16 6 C 0.57 16.13 7.39 86.70 0.64 16.77 16 7 O -0.58 -22.74 16.58 -3.98 -0.07 -22.80 16 8 C -0.18 -3.64 5.51 -20.05 -0.11 -3.75 16 9 C -0.02 -0.23 7.77 22.51 0.17 -0.05 16 10 C -0.15 -1.00 10.01 22.27 0.22 -0.77 16 11 C 0.15 1.65 7.30 22.45 0.16 1.81 16 12 F -0.13 -1.42 17.26 44.97 0.78 -0.64 16 13 C -0.19 -2.75 9.99 22.32 0.22 -2.52 16 14 C 0.16 3.24 7.24 22.66 0.16 3.40 16 15 F -0.14 -3.78 16.25 44.97 0.73 -3.04 16 16 C 0.12 3.48 5.53 86.54 0.48 3.96 16 17 C -0.07 -1.89 0.73 -51.28 -0.04 -1.93 16 18 C -0.13 -3.66 7.08 71.98 0.51 -3.15 16 19 C 0.17 5.78 4.85 86.38 0.42 6.20 16 20 N -0.76 -34.51 4.93 -343.47 -1.69 -36.20 16 21 C -0.22 -12.48 10.47 84.03 0.88 -11.60 16 22 H 0.07 3.97 8.06 -2.91 -0.02 3.94 16 23 C -0.06 -3.47 5.50 84.86 0.47 -3.01 16 24 N -0.98 -63.15 13.97 21.65 0.30 -62.84 16 25 Si 0.94 47.27 27.73 68.60 1.90 49.17 16 26 H -0.28 -14.22 7.11 99.48 0.71 -13.51 16 27 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 28 H -0.26 -12.14 6.52 99.48 0.65 -11.49 16 29 H 0.06 0.95 6.89 -2.38 -0.02 0.93 16 30 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.04 0.76 6.72 -2.39 -0.02 0.74 16 32 H 0.11 0.99 8.12 -2.39 -0.02 0.97 16 33 H 0.11 0.91 5.60 -2.39 -0.01 0.89 16 34 H 0.18 0.88 6.29 -2.91 -0.02 0.87 16 35 H 0.19 -0.01 8.06 -2.91 -0.02 -0.03 16 36 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 37 H 0.05 1.82 7.64 -2.38 -0.02 1.80 16 38 H 0.08 2.37 7.86 -2.39 -0.02 2.35 16 39 H 0.03 0.97 7.01 -2.39 -0.02 0.96 16 40 H 0.07 1.88 6.98 -2.38 -0.02 1.86 16 41 H 0.06 1.57 6.62 -2.39 -0.02 1.55 16 42 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.36 16.52 4.14 -92.70 -0.38 16.13 16 45 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -79.21 364.85 5.03 -74.18 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: 0.59 Total: 15.26 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 5.17 Total: 4.09 kcal Atomic # 7 Polarization: -112.14 SS G_CDS: -4.08 Total: -116.21 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.07 Total: -22.80 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 1.51 Total: -3.68 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.90 Total: 49.17 kcal Total: -79.21 5.03 -74.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183298646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.978 kcal (2) G-P(sol) polarization free energy of solvation -79.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds