Wall clock time and date at job start Tue Mar 31 2020 20:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.49821 * 2 1 4 4 C 1.53191 * 109.50183 * 120.09964 * 2 1 3 5 5 N 1.46923 * 108.77660 * 174.58630 * 4 2 1 6 6 C 1.34774 * 120.63032 * 126.36674 * 5 4 2 7 7 O 1.21575 * 120.00341 * 175.86824 * 6 5 4 8 8 C 1.47698 * 120.00068 * 355.87207 * 6 5 4 9 9 C 1.39649 * 120.15693 * 54.19862 * 8 6 5 10 10 C 1.38067 * 119.85386 * 179.97438 * 9 8 6 11 11 F 1.35099 * 119.92092 * 179.97438 * 10 9 8 12 12 C 1.38657 * 120.16409 * 0.02562 * 10 9 8 13 13 C 1.38181 * 120.31740 * 359.97414 * 12 10 9 14 14 C 1.38314 * 120.14331 * 359.74760 * 13 12 10 15 15 F 1.35105 * 120.08622 * 180.28161 * 14 13 12 16 16 C 1.46924 * 118.73831 * 306.39295 * 5 4 2 17 17 C 1.53189 * 108.78049 * 53.60829 * 16 5 4 18 18 C 1.53036 * 109.31005 * 305.36619 * 17 16 5 19 19 H 1.09004 * 109.46078 * 301.34399 * 18 17 16 20 20 C 1.52997 * 109.45956 * 181.38385 * 18 17 16 21 21 N 1.46499 * 109.47425 * 65.00294 * 20 18 17 22 22 C 1.36939 * 120.00545 * 180.02562 * 21 20 18 23 23 H 1.07995 * 119.99379 * 359.97438 * 22 21 20 24 24 C 1.38810 * 120.00158 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00022 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99864 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46810 * 60.00743 * 26 24 22 28 28 H 1.48502 * 109.46974 * 179.97438 * 26 24 22 29 29 H 1.48500 * 109.47393 * 300.00421 * 26 24 22 30 30 H 1.08997 * 109.46776 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46819 * 300.06104 * 1 2 3 32 32 H 1.08996 * 109.47300 * 60.06668 * 1 2 3 33 33 H 1.08999 * 109.58427 * 294.37181 * 4 2 1 34 34 H 1.08991 * 109.58645 * 54.65483 * 4 2 1 35 35 H 1.08001 * 120.07403 * 359.97438 * 9 8 6 36 36 H 1.08004 * 119.84235 * 179.97438 * 12 10 9 37 37 H 1.07996 * 119.93014 * 179.97438 * 13 12 10 38 38 H 1.08995 * 109.58569 * 293.81472 * 16 5 4 39 39 H 1.09008 * 109.58655 * 173.39440 * 16 5 4 40 40 H 1.08997 * 109.49545 * 65.31469 * 17 16 5 41 41 H 1.08998 * 109.50042 * 185.37993 * 17 16 5 42 42 H 1.09007 * 109.47359 * 185.00029 * 20 18 17 43 43 H 1.08995 * 109.47327 * 304.99784 * 20 18 17 44 44 H 0.97007 * 119.99602 * 359.97438 * 21 20 18 45 45 H 0.97002 * 120.00141 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7242 1.2493 5 7 3.5047 -0.8294 1.1692 6 6 4.2812 -0.3862 2.1776 7 8 5.4855 -0.5466 2.1332 8 6 3.6692 0.2945 3.3367 9 6 2.6415 -0.3245 4.0515 10 6 2.0742 0.3172 5.1344 11 9 1.0796 -0.2801 5.8265 12 6 2.5221 1.5738 5.5127 13 6 3.5386 2.1926 4.8104 14 6 4.1200 1.5591 3.7270 15 9 5.1176 2.1628 3.0447 16 6 4.1053 -1.4266 -0.0314 17 6 3.5709 -0.6946 -1.2664 18 6 2.0409 -0.7227 -1.2487 19 1 1.6968 -1.7569 -1.2359 20 6 1.5037 -0.0225 -2.4984 21 7 1.8916 -0.7828 -3.6891 22 6 1.5207 -0.3447 -4.9323 23 1 0.9419 0.5612 -5.0350 24 6 1.8887 -1.0649 -6.0604 25 7 2.5937 -2.1693 -5.9351 26 14 1.3822 -0.4676 -7.7562 27 1 1.9476 0.8849 -7.9939 28 1 1.8963 -1.4063 -8.7857 29 1 -0.0993 -0.4060 -7.8373 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5148 0.8894 32 1 -0.3634 0.5128 -0.8905 33 1 1.7639 -0.1586 2.1388 34 1 1.6034 -1.7210 1.2988 35 1 2.2913 -1.3030 3.7579 36 1 2.0744 2.0712 6.3603 37 1 3.8823 3.1715 5.1102 38 1 3.8377 -2.4817 -0.0876 39 1 5.1897 -1.3244 0.0131 40 1 3.9159 0.3393 -1.2541 41 1 3.9339 -1.1886 -2.1676 42 1 0.4166 0.0363 -2.4431 43 1 1.9193 0.9834 -2.5583 44 1 2.4118 -1.5964 -3.5967 45 1 2.8506 -2.6728 -6.7234 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184566075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:15 Heat of formation + Delta-G solvation = -108.257138 kcal Electronic energy + Delta-G solvation = -29644.749714 eV Core-core repulsion = 25297.483942 eV Total energy + Delta-G solvation = -4347.265772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -50.11535 -49.98167 -41.75202 -39.76976 -39.00190 -36.64412 -34.90450 -33.78733 -32.90970 -31.79262 -31.14519 -28.52260 -27.65307 -26.05852 -25.13229 -24.15536 -23.32968 -22.73078 -21.39618 -20.61182 -19.26290 -18.82017 -18.69699 -18.36305 -17.72841 -17.04853 -16.87714 -16.74467 -16.44633 -16.23392 -15.77809 -15.60520 -15.47521 -15.42199 -15.24597 -14.98812 -14.56292 -14.37183 -14.22579 -14.01055 -13.84539 -13.66542 -13.22856 -13.13154 -12.96764 -12.85050 -12.77387 -12.67487 -12.52165 -12.24319 -11.99745 -11.90809 -11.67502 -11.45304 -11.37141 -11.07788 -10.88829 -10.33721 -9.83487 -9.70750 -8.96944 -7.94795 -5.22717 -0.46086 -0.17608 1.31853 1.46509 1.49341 1.55455 1.74050 2.21661 2.56050 2.93602 2.97010 3.22372 3.38522 3.52460 3.62705 3.73572 3.77379 3.81984 3.93711 3.99196 4.20747 4.24645 4.30789 4.43046 4.50494 4.60601 4.61364 4.70025 4.71630 4.76491 4.80092 4.84389 4.84741 4.92840 4.96080 5.08570 5.12056 5.13108 5.25246 5.39334 5.44907 5.50081 5.57052 5.58433 6.16965 6.27922 6.84437 7.34302 8.11572 8.34549 9.28517 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019553 B = 0.002569 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.647706 B =10896.770327 C =11399.106231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 H 0.066 0.934 4 C 0.104 3.896 5 N -0.594 5.594 6 C 0.556 3.444 7 O -0.571 6.571 8 C -0.147 4.147 9 C -0.096 4.096 10 C 0.090 3.910 11 F -0.130 7.130 12 C -0.087 4.087 13 C -0.114 4.114 14 C 0.111 3.889 15 F -0.141 7.141 16 C 0.118 3.882 17 C -0.116 4.116 18 C -0.079 4.079 19 H 0.074 0.926 20 C 0.157 3.843 21 N -0.743 5.743 22 C -0.246 4.246 23 H 0.073 0.927 24 C -0.075 4.075 25 N -0.969 5.969 26 Si 0.972 3.028 27 H -0.280 1.280 28 H -0.295 1.295 29 H -0.276 1.276 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.109 0.891 34 H 0.096 0.904 35 H 0.164 0.836 36 H 0.187 0.813 37 H 0.182 0.818 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.007 0.993 44 H 0.374 0.626 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.341 7.077 28.853 30.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.085 0.915 4 C -0.018 4.018 5 N -0.325 5.325 6 C 0.345 3.655 7 O -0.451 6.451 8 C -0.151 4.151 9 C -0.115 4.115 10 C 0.070 3.930 11 F -0.109 7.109 12 C -0.106 4.106 13 C -0.132 4.132 14 C 0.091 3.909 15 F -0.120 7.120 16 C -0.004 4.004 17 C -0.155 4.155 18 C -0.098 4.098 19 H 0.092 0.908 20 C 0.030 3.970 21 N -0.386 5.386 22 C -0.377 4.377 23 H 0.091 0.909 24 C -0.267 4.267 25 N -0.619 5.619 26 Si 0.800 3.200 27 H -0.207 1.207 28 H -0.222 1.222 29 H -0.202 1.202 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.182 0.818 36 H 0.204 0.796 37 H 0.199 0.801 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.025 0.975 44 H 0.207 0.793 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.803 7.092 28.690 29.797 hybrid contribution 0.482 -0.228 -1.699 1.781 sum -3.321 6.864 26.991 28.048 Atomic orbital electron populations 1.21807 0.92599 1.02961 1.02728 1.21404 0.97397 0.99212 0.93022 0.91503 1.22331 0.77247 1.02833 0.99341 1.48128 1.08157 1.59020 1.17175 1.18424 0.85979 0.78169 0.82939 1.90801 1.15894 1.58446 1.79990 1.19620 1.00619 0.95792 0.99106 1.21205 0.94201 1.01683 0.94389 1.17518 0.89527 0.93248 0.92697 1.91567 1.58210 1.83396 1.77706 1.21553 0.95510 0.92684 1.00817 1.21286 0.96514 1.02492 0.92929 1.18061 0.88152 0.91116 0.93598 1.91542 1.58720 1.82702 1.79000 1.21614 0.98646 0.97405 0.82737 1.21784 0.96285 1.00297 0.97123 1.21248 0.94200 1.00121 0.94187 0.90805 1.20901 0.97008 0.93391 0.85649 1.42579 1.65319 1.29063 1.01681 1.19582 1.26906 1.06022 0.85239 0.90911 1.25532 1.01657 0.98011 1.01494 1.69799 1.44371 1.18525 1.29239 0.85242 0.77999 0.77060 0.79653 1.20670 1.22156 1.20227 0.91704 0.90270 0.92763 0.87311 0.88560 0.81810 0.79581 0.80114 0.89575 0.90507 0.93136 0.91875 0.94946 0.97507 0.79314 0.94021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.82 71.98 0.63 -2.03 16 2 C -0.09 -2.01 2.41 -10.71 -0.03 -2.03 16 3 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 4 C 0.10 1.88 4.81 86.36 0.42 2.30 16 5 N -0.59 -14.61 2.97 -822.51 -2.44 -17.06 16 6 C 0.56 15.37 6.92 86.74 0.60 15.97 16 7 O -0.57 -20.68 16.28 -3.95 -0.06 -20.74 16 8 C -0.15 -3.00 4.89 -20.06 -0.10 -3.10 16 9 C -0.10 -1.33 7.40 22.57 0.17 -1.16 16 10 C 0.09 0.98 7.29 22.33 0.16 1.15 16 11 F -0.13 -1.55 17.26 44.97 0.78 -0.78 16 12 C -0.09 -0.63 10.01 22.36 0.22 -0.41 16 13 C -0.11 -1.17 10.01 22.27 0.22 -0.95 16 14 C 0.11 2.15 7.27 22.67 0.16 2.31 16 15 F -0.14 -3.63 16.65 44.97 0.75 -2.88 16 16 C 0.12 3.31 6.42 86.36 0.55 3.86 16 17 C -0.12 -3.74 5.25 30.67 0.16 -3.58 16 18 C -0.08 -2.37 1.73 -10.77 -0.02 -2.39 16 19 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 20 C 0.16 6.11 5.41 86.38 0.47 6.57 16 21 N -0.74 -37.56 5.32 -343.46 -1.83 -39.38 16 22 C -0.25 -13.79 9.99 84.03 0.84 -12.95 16 23 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 24 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 25 N -0.97 -59.45 13.06 21.65 0.28 -59.17 16 26 Si 0.97 46.40 29.55 68.60 2.03 48.42 16 27 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 28 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 29 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.20 6.29 -2.39 -0.02 1.18 16 33 H 0.11 1.52 4.73 -2.39 -0.01 1.51 16 34 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.16 1.81 7.37 -2.91 -0.02 1.79 16 36 H 0.19 0.09 8.06 -2.91 -0.02 0.07 16 37 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 38 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.08 2.41 7.03 -2.38 -0.02 2.39 16 40 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.06 2.38 7.15 -2.39 -0.02 2.36 16 42 H 0.03 1.24 6.14 -2.38 -0.01 1.22 16 43 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.37 20.00 6.85 -92.70 -0.63 19.37 16 45 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -74.08 369.50 4.83 -69.25 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.39 Total: 22.62 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: 4.94 Total: -0.29 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -3.99 Total: -115.61 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.06 Total: -20.74 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 1.52 Total: -3.66 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.42 kcal Total: -74.08 4.83 -69.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184566075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.012 kcal (2) G-P(sol) polarization free energy of solvation -74.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds