Wall clock time and date at job start Tue Mar 31 2020 20:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.50038 * 2 1 4 4 C 1.52758 * 109.36133 * 120.10393 * 2 1 3 5 5 N 1.46924 * 109.00982 * 65.49237 * 4 2 1 6 6 C 1.34779 * 120.63433 * 233.58219 * 5 4 2 7 7 O 1.21572 * 119.99469 * 5.57262 * 6 5 4 8 8 C 1.47721 * 120.00218 * 185.56142 * 6 5 4 9 9 C 1.39653 * 120.11112 * 41.44806 * 8 6 5 10 10 C 1.37845 * 119.92825 * 179.97438 * 9 8 6 11 11 C 1.38602 * 120.14793 * 359.97171 * 10 9 8 12 12 F 1.35102 * 119.89087 * 180.02562 * 11 10 9 13 13 C 1.38841 * 120.22228 * 0.02562 * 11 10 9 14 14 F 1.35096 * 119.96704 * 179.97438 * 13 11 10 15 15 C 1.38059 * 120.06939 * 359.97438 * 13 11 10 16 16 C 1.46932 * 118.73941 * 53.31243 * 5 4 2 17 17 C 1.53188 * 108.77151 * 306.64620 * 16 5 4 18 18 C 1.53034 * 109.31729 * 54.63058 * 17 16 5 19 19 H 1.09001 * 109.46074 * 58.65638 * 18 17 16 20 20 C 1.53002 * 109.46061 * 178.61284 * 18 17 16 21 21 N 1.46504 * 109.47334 * 295.00342 * 20 18 17 22 22 C 1.36931 * 120.00223 * 180.02562 * 21 20 18 23 23 H 1.08004 * 119.99870 * 359.97438 * 22 21 20 24 24 C 1.38810 * 120.00101 * 179.97438 * 22 21 20 25 25 N 1.31621 * 120.00178 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00121 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47391 * 89.99732 * 26 24 22 28 28 H 1.48495 * 109.47338 * 210.00215 * 26 24 22 29 29 H 1.48503 * 109.47052 * 329.99824 * 26 24 22 30 30 H 1.08991 * 109.47403 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46634 * 300.06046 * 1 2 3 32 32 H 1.09001 * 109.47078 * 60.05573 * 1 2 3 33 33 H 1.09007 * 109.50545 * 305.61397 * 4 2 1 34 34 H 1.09001 * 109.43701 * 185.33361 * 4 2 1 35 35 H 1.08005 * 120.02989 * 0.25023 * 9 8 6 36 36 H 1.08001 * 119.92359 * 180.02562 * 10 9 8 37 37 H 1.08000 * 120.07184 * 180.02562 * 15 13 11 38 38 H 1.09005 * 109.58233 * 66.43148 * 16 5 4 39 39 H 1.09001 * 109.58816 * 186.85497 * 16 5 4 40 40 H 1.09007 * 109.49467 * 174.58534 * 17 16 5 41 41 H 1.09004 * 109.49683 * 294.64556 * 17 16 5 42 42 H 1.09004 * 109.46992 * 54.99999 * 20 18 17 43 43 H 1.08999 * 109.46921 * 175.00242 * 20 18 17 44 44 H 0.97006 * 119.99791 * 359.97438 * 21 20 18 45 45 H 0.96996 * 119.99765 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0365 -0.7229 1.2468 5 7 1.6515 -2.1386 1.1687 6 6 0.9740 -2.7227 2.1768 7 8 0.5873 -2.0550 3.1163 8 6 0.7012 -4.1740 2.1401 9 6 1.6894 -5.0620 1.7097 10 6 1.4309 -6.4156 1.6775 11 6 0.1926 -6.8974 2.0718 12 9 -0.0550 -8.2252 2.0386 13 6 -0.7944 -6.0202 2.5008 14 9 -1.9997 -6.4954 2.8836 15 6 -0.5453 -4.6627 2.5368 16 6 2.0139 -2.9041 -0.0320 17 6 1.5029 -2.1553 -1.2668 18 6 2.0407 -0.7227 -1.2486 19 1 3.1305 -0.7440 -1.2356 20 6 1.5606 0.0179 -2.4984 21 7 2.1479 -0.6016 -3.6891 22 6 1.8600 -0.1047 -4.9321 23 1 1.1997 0.7438 -5.0349 24 6 2.4169 -0.6913 -6.0602 25 7 3.2220 -1.7250 -5.9350 26 14 2.0236 -0.0139 -7.7560 27 1 3.0161 1.0311 -8.1141 28 1 2.0800 -1.1126 -8.7533 29 1 0.6619 0.5786 -7.7488 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5148 0.8895 32 1 -0.3633 0.5130 -0.8905 33 1 1.5926 -0.2719 2.1344 34 1 3.1223 -0.6417 1.2972 35 1 2.6565 -4.6889 1.4067 36 1 2.1953 -7.1023 1.3450 37 1 -1.3128 -3.9803 2.8709 38 1 3.0979 -3.0044 -0.0879 39 1 1.5552 -3.8919 0.0122 40 1 1.8480 -2.6621 -2.1682 41 1 0.4131 -2.1354 -1.2552 42 1 0.4737 -0.0376 -2.5586 43 1 1.8686 1.0620 -2.4427 44 1 2.7413 -1.3634 -3.5968 45 1 3.6114 -2.1347 -6.7233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184566563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:27 Heat of formation + Delta-G solvation = -85.637928 kcal Electronic energy + Delta-G solvation = -29492.203932 eV Core-core repulsion = 25145.919002 eV Total energy + Delta-G solvation = -4346.284929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.86371 -48.93339 -40.98502 -39.04328 -37.87190 -35.09028 -33.59232 -31.98282 -31.53717 -30.84128 -30.38318 -27.11473 -26.90703 -24.42295 -23.85590 -23.37231 -22.92483 -21.52259 -20.45414 -18.77223 -18.15084 -18.10523 -17.55332 -17.09606 -16.72802 -16.33220 -16.06058 -15.54671 -15.33090 -15.08109 -14.90022 -14.62075 -14.35699 -14.31780 -13.97913 -13.90538 -13.61378 -13.28797 -13.08646 -12.97591 -12.68971 -12.58030 -12.27019 -12.23447 -11.82534 -11.62884 -11.41377 -11.07621 -10.96962 -10.80126 -10.43546 -10.36081 -10.24478 -10.05300 -9.97243 -9.67549 -9.60156 -9.14646 -8.88983 -8.72496 -6.94074 -5.80181 -3.07993 0.15235 0.50272 2.28055 2.64726 3.05657 3.30335 3.41253 3.46940 3.48098 3.88619 4.00919 4.10482 4.40181 4.55817 4.57443 4.73093 4.84156 4.95155 5.04995 5.12908 5.17648 5.28461 5.33697 5.37694 5.42306 5.48607 5.56318 5.61853 5.66147 5.72598 5.77679 5.81098 5.99876 6.04004 6.13291 6.19099 6.24707 6.33036 6.40180 6.41793 6.60549 6.76726 6.89793 7.17128 7.67549 7.87110 8.39407 9.50709 10.08568 10.43085 11.42802 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013036 B = 0.002755 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.453853 B =10159.458483 C =11452.980372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.084 0.916 4 C 0.117 3.883 5 N -0.595 5.595 6 C 0.561 3.439 7 O -0.534 6.534 8 C -0.107 4.107 9 C -0.069 4.069 10 C -0.129 4.129 11 C 0.088 3.912 12 F -0.124 7.124 13 C 0.064 3.936 14 F -0.124 7.124 15 C -0.075 4.075 16 C 0.094 3.906 17 C -0.128 4.128 18 C -0.089 4.089 19 H 0.072 0.928 20 C 0.158 3.842 21 N -0.732 5.732 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.022 0.978 43 H 0.017 0.983 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.800 -7.586 19.103 20.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.102 0.898 4 C -0.005 4.005 5 N -0.327 5.327 6 C 0.349 3.651 7 O -0.412 6.412 8 C -0.110 4.110 9 C -0.087 4.087 10 C -0.148 4.148 11 C 0.068 3.932 12 F -0.102 7.102 13 C 0.044 3.956 14 F -0.103 7.103 15 C -0.094 4.094 16 C -0.028 4.028 17 C -0.166 4.166 18 C -0.108 4.108 19 H 0.091 0.909 20 C 0.031 3.969 21 N -0.376 5.376 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.169 0.831 36 H 0.173 0.827 37 H 0.172 0.828 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.039 0.961 43 H 0.035 0.965 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.130 -7.187 19.470 20.989 hybrid contribution -0.229 -0.312 -1.076 1.144 sum -3.359 -7.500 18.394 20.146 Atomic orbital electron populations 1.21870 0.94859 1.01956 1.01576 1.21406 0.96758 0.99587 0.94106 0.89824 1.21666 0.99624 0.79602 0.99572 1.48010 1.55160 1.11850 1.17676 1.18031 0.78041 0.86387 0.82651 1.90803 1.51522 1.64336 1.34540 1.19808 0.94596 0.94276 1.02348 1.21400 0.99802 0.91804 0.95718 1.21066 0.95438 0.96627 1.01659 1.17922 0.94586 0.77805 1.02933 1.91560 1.94603 1.30087 1.93989 1.17474 0.81871 0.91995 1.04295 1.91560 1.41345 1.88598 1.88788 1.21072 0.97740 0.92887 0.97713 1.22247 1.00693 0.95526 0.84326 1.21984 1.01519 0.96070 0.97038 1.21313 1.00282 0.94611 0.94565 0.90945 1.20713 0.95938 0.94660 0.85624 1.42374 1.56789 1.37601 1.00862 1.19223 1.23010 1.10821 0.83854 0.91303 1.24712 1.00092 0.98368 0.97792 1.69645 1.35676 1.24441 1.28565 0.86208 0.77820 0.77810 0.84474 1.21761 1.21779 1.20798 0.92679 0.93230 0.91909 0.88942 0.91147 0.83106 0.82717 0.82752 0.90646 0.89353 0.89210 0.91264 0.96073 0.96474 0.78328 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.38 37.16 0.31 -1.48 16 2 C -0.10 -1.17 2.72 -90.72 -0.25 -1.42 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 4 C 0.12 1.27 5.80 -3.94 -0.02 1.24 16 5 N -0.59 -6.40 2.42 -174.18 -0.42 -6.82 16 6 C 0.56 6.62 7.30 -12.39 -0.09 6.53 16 7 O -0.53 -7.94 16.36 5.30 0.09 -7.85 16 8 C -0.11 -1.04 5.08 -104.97 -0.53 -1.58 16 9 C -0.07 -0.52 7.38 -39.20 -0.29 -0.80 16 10 C -0.13 -0.93 10.01 -39.59 -0.40 -1.32 16 11 C 0.09 0.81 7.31 -39.22 -0.29 0.53 16 12 F -0.12 -1.26 17.17 2.25 0.04 -1.22 16 13 C 0.06 0.64 7.30 -39.42 -0.29 0.35 16 14 F -0.12 -1.37 17.18 2.25 0.04 -1.33 16 15 C -0.07 -0.73 9.63 -39.13 -0.38 -1.11 16 16 C 0.09 0.94 4.93 -3.71 -0.02 0.92 16 17 C -0.13 -1.69 4.90 -26.62 -0.13 -1.82 16 18 C -0.09 -1.26 1.96 -90.58 -0.18 -1.43 16 19 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 20 C 0.16 2.96 5.18 -4.04 -0.02 2.94 16 21 N -0.73 -17.50 5.32 -59.90 -0.32 -17.82 16 22 C -0.24 -6.47 9.99 -15.06 -0.15 -6.62 16 23 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -27.33 13.06 55.49 0.72 -26.60 16 26 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 29 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 30 H 0.05 0.71 5.97 -51.93 -0.31 0.40 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.82 6.58 -51.93 -0.34 0.48 16 33 H 0.09 1.06 7.00 -51.92 -0.36 0.70 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.15 0.87 6.72 -52.48 -0.35 0.51 16 36 H 0.16 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 39 H 0.09 0.77 4.81 -51.93 -0.25 0.52 16 40 H 0.09 1.38 7.15 -51.93 -0.37 1.01 16 41 H 0.07 0.96 6.34 -51.93 -0.33 0.63 16 42 H 0.02 0.41 6.74 -51.93 -0.35 0.06 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.38 9.47 6.85 -40.82 -0.28 9.19 16 45 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 364.99 15.07 5.50 5.50 Total: -1.00 -31.45 364.99 -8.06 -39.51 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.87 Total: 5.22 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -2.81 Total: -5.56 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.02 Total: -51.24 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.09 Total: -7.85 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.08 Total: -2.56 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.45 -8.06 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184566563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.129 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds