Wall clock time and date at job start Tue Mar 31 2020 20:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.50038 * 2 1 4 4 C 1.52758 * 109.36133 * 120.10393 * 2 1 3 5 5 N 1.46924 * 109.00982 * 65.49237 * 4 2 1 6 6 C 1.34779 * 120.63433 * 233.58219 * 5 4 2 7 7 O 1.21572 * 119.99469 * 5.57262 * 6 5 4 8 8 C 1.47721 * 120.00218 * 185.56142 * 6 5 4 9 9 C 1.39653 * 120.11112 * 41.44806 * 8 6 5 10 10 C 1.37845 * 119.92825 * 179.97438 * 9 8 6 11 11 C 1.38602 * 120.14793 * 359.97171 * 10 9 8 12 12 F 1.35102 * 119.89087 * 180.02562 * 11 10 9 13 13 C 1.38841 * 120.22228 * 0.02562 * 11 10 9 14 14 F 1.35096 * 119.96704 * 179.97438 * 13 11 10 15 15 C 1.38059 * 120.06939 * 359.97438 * 13 11 10 16 16 C 1.46932 * 118.73941 * 53.31243 * 5 4 2 17 17 C 1.53188 * 108.77151 * 306.64620 * 16 5 4 18 18 C 1.53034 * 109.31729 * 54.63058 * 17 16 5 19 19 H 1.09001 * 109.46074 * 58.65638 * 18 17 16 20 20 C 1.53002 * 109.46061 * 178.61284 * 18 17 16 21 21 N 1.46504 * 109.47334 * 295.00342 * 20 18 17 22 22 C 1.36931 * 120.00223 * 180.02562 * 21 20 18 23 23 H 1.08004 * 119.99870 * 359.97438 * 22 21 20 24 24 C 1.38810 * 120.00101 * 179.97438 * 22 21 20 25 25 N 1.31621 * 120.00178 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00121 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47391 * 89.99732 * 26 24 22 28 28 H 1.48495 * 109.47338 * 210.00215 * 26 24 22 29 29 H 1.48503 * 109.47052 * 329.99824 * 26 24 22 30 30 H 1.08991 * 109.47403 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46634 * 300.06046 * 1 2 3 32 32 H 1.09001 * 109.47078 * 60.05573 * 1 2 3 33 33 H 1.09007 * 109.50545 * 305.61397 * 4 2 1 34 34 H 1.09001 * 109.43701 * 185.33361 * 4 2 1 35 35 H 1.08005 * 120.02989 * 0.25023 * 9 8 6 36 36 H 1.08001 * 119.92359 * 180.02562 * 10 9 8 37 37 H 1.08000 * 120.07184 * 180.02562 * 15 13 11 38 38 H 1.09005 * 109.58233 * 66.43148 * 16 5 4 39 39 H 1.09001 * 109.58816 * 186.85497 * 16 5 4 40 40 H 1.09007 * 109.49467 * 174.58534 * 17 16 5 41 41 H 1.09004 * 109.49683 * 294.64556 * 17 16 5 42 42 H 1.09004 * 109.46992 * 54.99999 * 20 18 17 43 43 H 1.08999 * 109.46921 * 175.00242 * 20 18 17 44 44 H 0.97006 * 119.99791 * 359.97438 * 21 20 18 45 45 H 0.96996 * 119.99765 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0365 -0.7229 1.2468 5 7 1.6515 -2.1386 1.1687 6 6 0.9740 -2.7227 2.1768 7 8 0.5873 -2.0550 3.1163 8 6 0.7012 -4.1740 2.1401 9 6 1.6894 -5.0620 1.7097 10 6 1.4309 -6.4156 1.6775 11 6 0.1926 -6.8974 2.0718 12 9 -0.0550 -8.2252 2.0386 13 6 -0.7944 -6.0202 2.5008 14 9 -1.9997 -6.4954 2.8836 15 6 -0.5453 -4.6627 2.5368 16 6 2.0139 -2.9041 -0.0320 17 6 1.5029 -2.1553 -1.2668 18 6 2.0407 -0.7227 -1.2486 19 1 3.1305 -0.7440 -1.2356 20 6 1.5606 0.0179 -2.4984 21 7 2.1479 -0.6016 -3.6891 22 6 1.8600 -0.1047 -4.9321 23 1 1.1997 0.7438 -5.0349 24 6 2.4169 -0.6913 -6.0602 25 7 3.2220 -1.7250 -5.9350 26 14 2.0236 -0.0139 -7.7560 27 1 3.0161 1.0311 -8.1141 28 1 2.0800 -1.1126 -8.7533 29 1 0.6619 0.5786 -7.7488 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5148 0.8895 32 1 -0.3633 0.5130 -0.8905 33 1 1.5926 -0.2719 2.1344 34 1 3.1223 -0.6417 1.2972 35 1 2.6565 -4.6889 1.4067 36 1 2.1953 -7.1023 1.3450 37 1 -1.3128 -3.9803 2.8709 38 1 3.0979 -3.0044 -0.0879 39 1 1.5552 -3.8919 0.0122 40 1 1.8480 -2.6621 -2.1682 41 1 0.4131 -2.1354 -1.2552 42 1 0.4737 -0.0376 -2.5586 43 1 1.8686 1.0620 -2.4427 44 1 2.7413 -1.3634 -3.5968 45 1 3.6114 -2.1347 -6.7233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184566563.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:26 Heat of formation + Delta-G solvation = -102.888057 kcal Electronic energy + Delta-G solvation = -29492.951954 eV Core-core repulsion = 25145.919002 eV Total energy + Delta-G solvation = -4347.032951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.63079 -49.70919 -41.87171 -39.92112 -38.84038 -36.57782 -34.94152 -33.33325 -32.22766 -31.95499 -31.61832 -28.49526 -27.90829 -25.75106 -24.74880 -24.59306 -23.82425 -22.83543 -21.39995 -19.80989 -19.26107 -18.90318 -18.69098 -18.29829 -17.51567 -17.24873 -16.91913 -16.78065 -16.42547 -16.11760 -15.84219 -15.62409 -15.45844 -15.34629 -15.17346 -15.11398 -14.82795 -14.44038 -14.09773 -14.06175 -13.71454 -13.63981 -13.48014 -13.18189 -12.96114 -12.79547 -12.67264 -12.52622 -12.36933 -12.15534 -11.99780 -11.89048 -11.53437 -11.42640 -11.19990 -10.99031 -10.86058 -10.28195 -9.89975 -9.63836 -8.93411 -7.92670 -5.19348 -0.57088 -0.16380 1.44232 1.49259 1.49481 1.57853 1.81412 2.30697 2.57995 2.60733 3.14969 3.23309 3.41125 3.45574 3.72840 3.74957 3.81845 3.86608 3.91092 4.07499 4.25782 4.32698 4.42098 4.45637 4.52091 4.58404 4.68974 4.72818 4.75748 4.77406 4.82800 4.84955 4.89132 4.96422 5.00929 5.11826 5.20596 5.21410 5.26118 5.35662 5.49759 5.52266 5.56188 5.64538 6.28532 6.31021 6.97776 7.38011 8.14965 8.39221 9.30485 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013036 B = 0.002755 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.453853 B =10159.458483 C =11452.980372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 H 0.093 0.907 4 C 0.120 3.880 5 N -0.591 5.591 6 C 0.563 3.437 7 O -0.570 6.570 8 C -0.117 4.117 9 C -0.057 4.057 10 C -0.114 4.114 11 C 0.081 3.919 12 F -0.131 7.131 13 C 0.049 3.951 14 F -0.136 7.136 15 C -0.080 4.080 16 C 0.101 3.899 17 C -0.124 4.124 18 C -0.078 4.078 19 H 0.075 0.925 20 C 0.158 3.842 21 N -0.741 5.741 22 C -0.244 4.244 23 H 0.069 0.931 24 C -0.070 4.070 25 N -0.964 5.964 26 Si 0.966 3.034 27 H -0.288 1.288 28 H -0.295 1.295 29 H -0.274 1.274 30 H 0.046 0.954 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.177 0.823 36 H 0.187 0.813 37 H 0.150 0.850 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.016 0.984 43 H 0.014 0.986 44 H 0.377 0.623 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.710 -7.866 19.474 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 H 0.111 0.889 4 C -0.002 4.002 5 N -0.322 5.322 6 C 0.352 3.648 7 O -0.450 6.450 8 C -0.121 4.121 9 C -0.075 4.075 10 C -0.132 4.132 11 C 0.061 3.939 12 F -0.110 7.110 13 C 0.029 3.971 14 F -0.115 7.115 15 C -0.099 4.099 16 C -0.021 4.021 17 C -0.162 4.162 18 C -0.097 4.097 19 H 0.093 0.907 20 C 0.031 3.969 21 N -0.384 5.384 22 C -0.376 4.376 23 H 0.087 0.913 24 C -0.263 4.263 25 N -0.615 5.615 26 Si 0.796 3.204 27 H -0.215 1.215 28 H -0.221 1.221 29 H -0.199 1.199 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.195 0.805 36 H 0.204 0.796 37 H 0.168 0.832 38 H 0.117 0.883 39 H 0.123 0.877 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.034 0.966 43 H 0.032 0.968 44 H 0.210 0.790 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.055 -7.447 19.855 21.304 hybrid contribution -0.607 -0.184 -1.172 1.332 sum -2.662 -7.631 18.683 20.356 Atomic orbital electron populations 1.21821 0.95357 1.01358 1.01339 1.21346 0.96202 1.00050 0.93469 0.88885 1.21666 1.00741 0.79438 0.98383 1.48030 1.54663 1.11919 1.17566 1.18265 0.77311 0.87022 0.82205 1.90788 1.52915 1.65336 1.35957 1.19738 0.95214 0.93512 1.03617 1.21667 1.00039 0.91529 0.94281 1.21383 0.94979 0.96910 0.99947 1.18161 0.95222 0.77399 1.03157 1.91544 1.94742 1.30587 1.94077 1.17606 0.81878 0.92297 1.05315 1.91525 1.42133 1.88719 1.89081 1.21040 0.98046 0.92815 0.98039 1.22283 1.02110 0.95450 0.82219 1.21872 1.00829 0.95634 0.97863 1.21194 1.00300 0.94928 0.93273 0.90708 1.20849 0.95310 0.94744 0.85971 1.42538 1.56816 1.37563 1.01474 1.19574 1.22224 1.10446 0.85370 0.91299 1.25439 1.00678 0.99083 1.01116 1.69776 1.36953 1.25721 1.29069 0.85245 0.77876 0.76965 0.80310 1.21539 1.22126 1.19879 0.93466 0.92508 0.93047 0.89419 0.89107 0.80548 0.79594 0.83232 0.88269 0.87700 0.91450 0.92347 0.96632 0.96807 0.79014 0.94011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.38 71.98 0.60 -2.78 16 2 C -0.09 -2.01 2.72 -10.86 -0.03 -2.04 16 3 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 4 C 0.12 2.31 5.80 86.22 0.50 2.80 16 5 N -0.59 -11.36 2.42 -823.26 -1.99 -13.35 16 6 C 0.56 12.40 7.30 86.75 0.63 13.03 16 7 O -0.57 -16.51 16.36 -3.94 -0.06 -16.57 16 8 C -0.12 -2.09 5.08 -20.09 -0.10 -2.19 16 9 C -0.06 -0.67 7.38 22.52 0.17 -0.50 16 10 C -0.11 -1.27 10.01 22.26 0.22 -1.04 16 11 C 0.08 1.37 7.31 22.50 0.16 1.53 16 12 F -0.13 -2.50 17.17 44.97 0.77 -1.73 16 13 C 0.05 0.96 7.30 22.37 0.16 1.12 16 14 F -0.14 -3.04 17.18 44.97 0.77 -2.27 16 15 C -0.08 -1.53 9.63 22.56 0.22 -1.31 16 16 C 0.10 1.73 4.93 86.36 0.43 2.16 16 17 C -0.12 -3.12 4.90 30.67 0.15 -2.97 16 18 C -0.08 -2.11 1.96 -10.77 -0.02 -2.13 16 19 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 20 C 0.16 5.84 5.18 86.38 0.45 6.29 16 21 N -0.74 -35.46 5.32 -343.44 -1.83 -37.29 16 22 C -0.24 -13.27 9.99 84.03 0.84 -12.43 16 23 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 24 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 25 N -0.96 -56.62 13.06 21.65 0.28 -56.33 16 26 Si 0.97 45.16 29.55 68.60 2.03 47.18 16 27 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 28 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 29 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 30 H 0.05 1.19 5.97 -2.39 -0.01 1.18 16 31 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.05 1.33 6.58 -2.39 -0.02 1.31 16 33 H 0.09 1.86 7.00 -2.38 -0.02 1.84 16 34 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.18 1.19 6.72 -2.91 -0.02 1.17 16 36 H 0.19 0.93 8.06 -2.91 -0.02 0.91 16 37 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 38 H 0.10 1.33 8.13 -2.38 -0.02 1.31 16 39 H 0.11 1.49 4.81 -2.39 -0.01 1.48 16 40 H 0.07 2.04 7.15 -2.38 -0.02 2.02 16 41 H 0.06 1.59 6.34 -2.38 -0.02 1.58 16 42 H 0.02 0.61 6.74 -2.39 -0.02 0.59 16 43 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.38 18.74 6.85 -92.70 -0.63 18.11 16 45 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -68.07 364.99 5.22 -62.84 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.40 Total: 21.44 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 4.85 Total: -3.92 kcal Atomic # 7 Polarization: -103.44 SS G_CDS: -3.53 Total: -106.97 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.06 Total: -16.57 kcal Atomic # 9 Polarization: -5.55 SS G_CDS: 1.54 Total: -4.00 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -68.07 5.22 -62.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184566563.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.046 kcal (2) G-P(sol) polarization free energy of solvation -68.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds