Wall clock time and date at job start Tue Mar 31 2020 20:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.53081 * 2 1 4 4 C 1.53193 * 109.49840 * 239.91482 * 2 1 3 5 5 N 1.46963 * 108.88869 * 185.49550 * 4 2 1 6 6 C 1.34776 * 120.65072 * 233.53638 * 5 4 2 7 7 O 1.21560 * 120.00604 * 355.61982 * 6 5 4 8 8 C 1.47711 * 119.99713 * 175.63027 * 6 5 4 9 9 C 1.39680 * 120.15495 * 54.17490 * 8 6 5 10 10 C 1.37849 * 119.92280 * 180.02562 * 9 8 6 11 11 C 1.38445 * 120.24200 * 0.02562 * 10 9 8 12 12 C 1.38382 * 120.31404 * 359.97438 * 11 10 9 13 13 F 1.35095 * 119.96577 * 180.02562 * 12 11 10 14 14 C 1.38550 * 120.07081 * 359.71918 * 12 11 10 15 15 F 1.35092 * 120.12304 * 180.27607 * 14 12 11 16 16 C 1.46928 * 118.71503 * 53.35645 * 5 4 2 17 17 C 1.53188 * 108.89275 * 306.63919 * 16 5 4 18 18 C 1.53042 * 109.49449 * 120.07874 * 2 1 3 19 19 H 1.09002 * 109.45976 * 61.29697 * 18 2 1 20 20 C 1.52996 * 109.46334 * 301.33680 * 18 2 1 21 21 N 1.46493 * 109.47373 * 174.93058 * 20 18 2 22 22 C 1.36946 * 120.00264 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99273 * 359.97438 * 22 21 20 24 24 C 1.38805 * 120.00082 * 180.02562 * 22 21 20 25 25 N 1.31622 * 120.00215 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99815 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47108 * 59.99978 * 26 24 22 28 28 H 1.48506 * 109.47089 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47250 * 299.99923 * 26 24 22 30 30 H 1.09001 * 109.47196 * 299.92285 * 1 2 3 31 31 H 1.09006 * 109.46533 * 59.91931 * 1 2 3 32 32 H 1.08994 * 109.47048 * 179.91673 * 1 2 3 33 33 H 1.08997 * 109.59176 * 305.20384 * 4 2 1 34 34 H 1.09000 * 109.58322 * 65.48797 * 4 2 1 35 35 H 1.08001 * 120.04130 * 359.97438 * 9 8 6 36 36 H 1.08006 * 119.87644 * 180.02562 * 10 9 8 37 37 H 1.07998 * 119.84318 * 179.97438 * 11 10 9 38 38 H 1.08999 * 109.58360 * 186.78493 * 16 5 4 39 39 H 1.08997 * 109.58921 * 66.50383 * 16 5 4 40 40 H 1.09005 * 109.49864 * 174.51413 * 17 16 5 41 41 H 1.08998 * 109.50187 * 294.58441 * 17 16 5 42 42 H 1.09005 * 109.47102 * 294.93567 * 20 18 2 43 43 H 1.08997 * 109.47270 * 54.92910 * 20 18 2 44 44 H 0.97000 * 120.00486 * 0.02562 * 21 20 18 45 45 H 0.97001 * 119.99918 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2495 5 7 3.5048 -0.8323 -1.1711 6 6 4.2816 -0.3917 -2.1806 7 8 3.7718 0.0278 -3.2013 8 6 5.7523 -0.4188 -2.0467 9 6 6.4049 -1.6084 -1.7148 10 6 7.7776 -1.6281 -1.5906 11 6 8.5128 -0.4726 -1.7931 12 6 7.8765 0.7114 -2.1223 13 9 8.6008 1.8347 -2.3189 14 6 6.4979 0.7445 -2.2567 15 9 5.8762 1.8985 -2.5835 16 6 4.1052 -1.4268 0.0310 17 6 3.5708 -0.6951 1.2661 18 6 2.0407 -0.7231 1.2484 19 1 1.6966 -1.7573 1.2354 20 6 1.5036 -0.0232 2.4984 21 7 1.8915 -0.7839 3.6887 22 6 1.5207 -0.3461 4.9322 23 1 0.9426 0.5604 5.0352 24 6 1.8887 -1.0666 6.0601 25 7 2.5937 -2.1710 5.9345 26 14 1.3822 -0.4697 7.7561 27 1 -0.0994 -0.4082 7.8372 28 1 1.8952 -1.4093 8.7852 29 1 1.9475 0.8827 7.9941 30 1 -0.3634 0.5126 0.8907 31 1 -0.3632 0.5151 -0.8893 32 1 -0.3633 -1.0276 -0.0015 33 1 1.6053 -1.7217 -1.2980 34 1 1.7616 -0.1593 -2.1390 35 1 5.8346 -2.5115 -1.5549 36 1 8.2815 -2.5485 -1.3344 37 1 9.5879 -0.4953 -1.6938 38 1 5.1895 -1.3248 -0.0136 39 1 3.8397 -2.4824 0.0882 40 1 3.9333 -1.1897 2.1673 41 1 3.9164 0.3386 1.2544 42 1 1.9193 0.9827 2.5586 43 1 0.4167 0.0357 2.4432 44 1 2.4117 -1.5974 3.5963 45 1 2.8505 -2.6747 6.7226 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185029853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:42 Heat of formation + Delta-G solvation = -88.116295 kcal Electronic energy + Delta-G solvation = -29673.223595 eV Core-core repulsion = 25326.831196 eV Total energy + Delta-G solvation = -4346.392400 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -49.78055 -48.84960 -40.77068 -38.94792 -37.90359 -35.08945 -33.72453 -32.10733 -31.55201 -30.82520 -30.34412 -26.97551 -26.93764 -24.65594 -23.51488 -23.24486 -22.48777 -21.42326 -20.37109 -19.50930 -18.24279 -17.87323 -17.46175 -17.15436 -16.81121 -16.39726 -16.01967 -15.36893 -15.26808 -15.13943 -14.85714 -14.64507 -14.54043 -14.14222 -13.97263 -13.62736 -13.49411 -13.27850 -12.92773 -12.73846 -12.58240 -12.51692 -12.32889 -12.05528 -11.95959 -11.82478 -11.62787 -11.02259 -10.91705 -10.82637 -10.44774 -10.38955 -10.22730 -10.11974 -9.97219 -9.65723 -9.46104 -9.16118 -8.87892 -8.71730 -6.92574 -5.78982 -3.06766 0.25642 0.47684 2.28171 2.63798 2.99957 3.36620 3.42674 3.47243 3.48001 3.91494 3.98965 4.27308 4.30626 4.56704 4.58593 4.74911 4.87534 4.91008 5.05445 5.09373 5.24280 5.26684 5.38698 5.44281 5.46323 5.50155 5.55488 5.64529 5.67228 5.74369 5.81682 5.86457 5.93358 6.03593 6.17201 6.21922 6.25501 6.29222 6.39355 6.46727 6.58161 6.80805 6.90615 7.16788 7.68204 7.86943 8.40671 9.51832 10.09797 10.44471 11.43966 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012799 B = 0.002924 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.074202 B = 9573.248274 C =10725.452133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.073 0.927 4 C 0.119 3.881 5 N -0.596 5.596 6 C 0.562 3.438 7 O -0.528 6.528 8 C -0.131 4.131 9 C -0.071 4.071 10 C -0.102 4.102 11 C -0.107 4.107 12 C 0.064 3.936 13 F -0.125 7.125 14 C 0.113 3.887 15 F -0.114 7.114 16 C 0.095 3.905 17 C -0.126 4.126 18 C -0.089 4.089 19 H 0.073 0.927 20 C 0.156 3.844 21 N -0.731 5.731 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.935 5.935 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.016 0.984 43 H 0.025 0.975 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.757 -0.752 -18.294 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.092 0.908 4 C -0.003 4.003 5 N -0.328 5.328 6 C 0.348 3.652 7 O -0.404 6.404 8 C -0.135 4.135 9 C -0.090 4.090 10 C -0.121 4.121 11 C -0.126 4.126 12 C 0.044 3.956 13 F -0.103 7.103 14 C 0.092 3.908 15 F -0.092 7.092 16 C -0.027 4.027 17 C -0.164 4.164 18 C -0.108 4.108 19 H 0.092 0.908 20 C 0.029 3.971 21 N -0.376 5.376 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.584 5.584 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.169 0.831 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.082 0.918 42 H 0.034 0.966 43 H 0.043 0.957 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 9.393 -0.346 -18.719 20.946 hybrid contribution 0.012 0.497 1.027 1.141 sum 9.405 0.151 -17.691 20.037 Atomic orbital electron populations 1.21826 0.94170 1.02255 1.02164 1.21473 0.96280 0.99992 0.94046 0.90835 1.21778 0.77851 1.01251 0.99432 1.48064 1.07245 1.59805 1.17696 1.17909 0.85568 0.78055 0.83631 1.90817 1.74515 1.46584 1.28524 1.19889 0.94619 0.93572 1.05432 1.21335 0.94933 0.96747 0.96000 1.21067 0.93264 0.98491 0.99238 1.21283 1.01832 0.90545 0.98963 1.17536 0.87321 0.84580 1.06153 1.91558 1.76788 1.49224 1.92744 1.17568 0.88889 0.82727 1.01641 1.91591 1.82392 1.45821 1.89382 1.22168 0.98590 0.97691 0.84225 1.21941 0.96160 1.01205 0.97123 1.21347 0.94615 1.00243 0.94570 0.90834 1.20753 0.96717 0.94060 0.85595 1.42359 1.65476 1.28913 1.00833 1.19189 1.27749 1.06177 0.83862 0.91349 1.24703 1.00915 0.97518 0.97764 1.69637 1.42849 1.17224 1.28663 0.86284 0.78079 0.77665 0.84265 1.21307 1.21688 1.21309 0.91213 0.92941 0.92426 0.91058 0.89073 0.83396 0.83277 0.83104 0.89500 0.90533 0.89043 0.91756 0.96584 0.95741 0.78334 0.93515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.82 37.16 0.33 -1.40 16 2 C -0.10 -1.26 2.42 -90.50 -0.22 -1.48 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 4 C 0.12 1.43 5.70 -3.69 -0.02 1.41 16 5 N -0.60 -7.30 2.98 -173.91 -0.52 -7.82 16 6 C 0.56 7.70 6.92 -12.39 -0.09 7.61 16 7 O -0.53 -8.97 16.29 5.31 0.09 -8.88 16 8 C -0.13 -1.49 4.89 -104.92 -0.51 -2.00 16 9 C -0.07 -0.56 7.42 -39.19 -0.29 -0.85 16 10 C -0.10 -0.61 10.03 -39.65 -0.40 -1.00 16 11 C -0.11 -0.75 10.01 -39.45 -0.40 -1.14 16 12 C 0.06 0.66 7.30 -39.41 -0.29 0.37 16 13 F -0.12 -1.40 17.18 2.25 0.04 -1.36 16 14 C 0.11 1.39 7.28 -38.90 -0.28 1.11 16 15 F -0.11 -1.68 16.57 2.25 0.04 -1.65 16 16 C 0.10 1.04 5.52 -3.71 -0.02 1.02 16 17 C -0.13 -1.77 5.25 -26.61 -0.14 -1.91 16 18 C -0.09 -1.32 1.73 -90.57 -0.16 -1.48 16 19 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 20 C 0.16 3.00 5.41 -4.05 -0.02 2.98 16 21 N -0.73 -17.73 5.32 -59.91 -0.32 -18.05 16 22 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -27.44 13.06 55.49 0.72 -26.71 16 26 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 30 H 0.07 0.90 6.29 -51.93 -0.33 0.57 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.17 7.04 -51.93 -0.37 0.81 16 35 H 0.15 0.87 7.36 -52.49 -0.39 0.48 16 36 H 0.15 0.43 8.06 -52.48 -0.42 0.00 16 37 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.09 0.82 4.73 -51.93 -0.25 0.58 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.09 1.45 7.15 -51.93 -0.37 1.08 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.02 0.48 6.14 -51.93 -0.32 0.16 16 44 H 0.38 9.58 6.85 -40.82 -0.28 9.30 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 369.40 15.07 5.57 5.57 Total: -1.00 -32.93 369.40 -8.22 -41.15 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -6.07 Total: 4.60 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -2.75 Total: -3.92 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.11 Total: -52.58 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.08 Total: -3.01 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.93 -8.22 -41.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185029853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.965 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds