Wall clock time and date at job start Tue Mar 31 2020 20:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.08997 * 109.50170 * 2 1 4 4 C 1.53197 * 109.50111 * 239.89858 * 2 1 3 5 5 N 1.46916 * 108.77914 * 185.41341 * 4 2 1 6 6 C 1.34772 * 120.63573 * 233.63136 * 5 4 2 7 7 O 1.21589 * 119.99721 * 355.84997 * 6 5 4 8 8 C 1.47571 * 120.00539 * 175.84921 * 6 5 4 9 9 C 1.39736 * 120.14146 * 54.27004 * 8 6 5 10 10 C 1.37731 * 119.90417 * 180.02562 * 9 8 6 11 11 C 1.38754 * 120.19342 * 0.02562 * 10 9 8 12 12 F 1.35101 * 119.85828 * 179.97438 * 11 10 9 13 13 C 1.38495 * 120.28935 * 0.02562 * 11 10 9 14 14 C 1.38198 * 120.08734 * 359.67267 * 13 11 10 15 15 F 1.35104 * 120.09875 * 180.32028 * 14 13 11 16 16 C 1.46933 * 118.73900 * 53.61179 * 5 4 2 17 17 C 1.53193 * 108.77092 * 306.38966 * 16 5 4 18 18 C 1.53038 * 109.49836 * 120.06320 * 2 1 3 19 19 H 1.09002 * 109.46169 * 61.31130 * 18 2 1 20 20 C 1.52998 * 109.46168 * 301.33663 * 18 2 1 21 21 N 1.46497 * 109.47789 * 174.99952 * 20 18 2 22 22 C 1.36931 * 120.00482 * 180.02562 * 21 20 18 23 23 H 1.08000 * 119.99831 * 0.02562 * 22 21 20 24 24 C 1.38814 * 120.00399 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99514 * 359.97438 * 24 22 21 26 26 Si 1.86791 * 120.00319 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47503 * 179.97438 * 26 24 22 28 28 H 1.48499 * 109.47392 * 300.00308 * 26 24 22 29 29 H 1.48506 * 109.47269 * 59.99696 * 26 24 22 30 30 H 1.08996 * 109.47590 * 299.93997 * 1 2 3 31 31 H 1.09002 * 109.47256 * 59.93861 * 1 2 3 32 32 H 1.09003 * 109.47573 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.58447 * 305.20594 * 4 2 1 34 34 H 1.09001 * 109.58575 * 65.48588 * 4 2 1 35 35 H 1.08005 * 120.04483 * 359.97438 * 9 8 6 36 36 H 1.08002 * 119.90106 * 180.02562 * 10 9 8 37 37 H 1.07996 * 119.95586 * 180.02562 * 13 11 10 38 38 H 1.09000 * 109.58613 * 66.17536 * 16 5 4 39 39 H 1.09003 * 109.58597 * 186.46268 * 16 5 4 40 40 H 1.08999 * 109.49801 * 294.68100 * 17 16 5 41 41 H 1.09005 * 109.49257 * 174.58888 * 17 16 5 42 42 H 1.09007 * 109.46708 * 54.99549 * 20 18 2 43 43 H 1.09001 * 109.46966 * 294.99928 * 20 18 2 44 44 H 0.97002 * 119.99421 * 0.02562 * 21 20 18 45 45 H 0.97004 * 120.00068 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7243 -1.2493 5 7 3.5045 -0.8295 -1.1693 6 6 4.2811 -0.3864 -2.1777 7 8 3.7710 0.0367 -3.1971 8 6 5.7505 -0.4146 -2.0447 9 6 6.4028 -1.6066 -1.7184 10 6 7.7744 -1.6272 -1.5950 11 6 8.5104 -0.4678 -1.7933 12 9 9.8555 -0.4957 -1.6700 13 6 7.8721 0.7182 -2.1159 14 6 6.4969 0.7510 -2.2488 15 9 5.8746 1.9064 -2.5699 16 6 4.1052 -1.4268 0.0313 17 6 3.5707 -0.6946 1.2662 18 6 2.0407 -0.7227 1.2485 19 1 1.6968 -1.7570 1.2357 20 6 1.5036 -0.0225 2.4984 21 7 1.8930 -0.7819 3.6891 22 6 1.5215 -0.3441 4.9322 23 1 0.9412 0.5609 5.0349 24 6 1.8900 -1.0640 6.0605 25 7 2.5960 -2.1677 5.9352 26 14 1.3827 -0.4671 7.7562 27 1 1.8964 -1.4060 8.7857 28 1 1.9466 0.8859 7.9940 29 1 -0.0989 -0.4070 7.8371 30 1 -0.3634 0.5129 0.8905 31 1 -0.3634 0.5148 -0.8894 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6052 -1.7221 -1.2974 34 1 1.7616 -0.1600 -2.1390 35 1 5.8320 -2.5101 -1.5624 36 1 8.2785 -2.5486 -1.3432 37 1 8.4503 1.6173 -2.2694 38 1 3.8374 -2.4819 0.0876 39 1 5.1897 -1.3269 -0.0145 40 1 3.9158 0.3392 1.2540 41 1 3.9334 -1.1890 2.1675 42 1 0.4165 0.0353 2.4436 43 1 1.9184 0.9838 2.5576 44 1 2.4139 -1.5949 3.5968 45 1 2.8592 -2.4779 5.0546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185595071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:10 Heat of formation + Delta-G solvation = -89.426205 kcal Electronic energy + Delta-G solvation = -29598.559580 eV Core-core repulsion = 25252.110379 eV Total energy + Delta-G solvation = -4346.449201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.49053 -49.36559 -40.79813 -38.94971 -37.93314 -35.25349 -33.91218 -32.21096 -31.58903 -31.05228 -30.22237 -26.93302 -26.77456 -24.40560 -23.60107 -23.32257 -22.60583 -21.58801 -20.39422 -19.53476 -18.59265 -17.87107 -17.52718 -17.27922 -16.61177 -16.24008 -16.15213 -15.67636 -15.35262 -15.11424 -14.89514 -14.81584 -14.62714 -14.35397 -14.03546 -13.68878 -13.56959 -13.36298 -13.07415 -12.90814 -12.79673 -12.53084 -12.42330 -12.03664 -12.00004 -11.87182 -11.70370 -11.00933 -10.76863 -10.73326 -10.51351 -10.42847 -10.20643 -10.10565 -9.96718 -9.55336 -9.23573 -9.18787 -8.89300 -8.75443 -7.00819 -6.12404 -3.11489 0.19264 0.48461 2.26070 2.61731 2.96047 3.32872 3.50563 3.53730 3.71161 3.83753 3.99023 4.07740 4.33782 4.58504 4.62970 4.67636 4.81800 4.85156 4.96998 5.11870 5.19151 5.22545 5.31039 5.34304 5.39470 5.46463 5.49566 5.58127 5.59756 5.67788 5.74266 5.77872 5.82233 5.90384 6.10243 6.15479 6.17006 6.20475 6.32138 6.38120 6.45444 6.72382 6.81494 7.12922 7.79519 7.84731 8.73955 9.21549 10.07768 10.22957 11.36203 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011958 B = 0.002973 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.994411 B = 9417.381026 C =10940.217643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.074 0.926 4 C 0.119 3.881 5 N -0.598 5.598 6 C 0.563 3.437 7 O -0.529 6.529 8 C -0.171 4.171 9 C -0.032 4.032 10 C -0.166 4.166 11 C 0.150 3.850 12 F -0.126 7.126 13 C -0.196 4.196 14 C 0.178 3.822 15 F -0.115 7.115 16 C 0.096 3.904 17 C -0.125 4.125 18 C -0.090 4.090 19 H 0.072 0.928 20 C 0.162 3.838 21 N -0.743 5.743 22 C -0.330 4.330 23 H 0.063 0.937 24 C -0.045 4.045 25 N -0.945 5.945 26 Si 1.079 2.921 27 H -0.285 1.285 28 H -0.296 1.296 29 H -0.296 1.296 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.026 0.974 43 H 0.017 0.983 44 H 0.366 0.634 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.880 0.988 -18.800 20.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.092 0.908 4 C -0.003 4.003 5 N -0.330 5.330 6 C 0.350 3.650 7 O -0.406 6.406 8 C -0.175 4.175 9 C -0.050 4.050 10 C -0.185 4.185 11 C 0.131 3.869 12 F -0.104 7.104 13 C -0.216 4.216 14 C 0.158 3.842 15 F -0.094 7.094 16 C -0.026 4.026 17 C -0.164 4.164 18 C -0.109 4.109 19 H 0.090 0.910 20 C 0.035 3.965 21 N -0.389 5.389 22 C -0.461 4.461 23 H 0.081 0.919 24 C -0.243 4.243 25 N -0.590 5.590 26 Si 0.910 3.090 27 H -0.210 1.210 28 H -0.223 1.223 29 H -0.223 1.223 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.110 0.890 35 H 0.169 0.831 36 H 0.169 0.831 37 H 0.174 0.826 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.044 0.956 43 H 0.035 0.965 44 H 0.199 0.801 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.562 1.137 -17.684 19.680 hybrid contribution 0.271 0.397 -1.575 1.647 sum 8.833 1.534 -19.259 21.243 Atomic orbital electron populations 1.21826 0.94148 1.02255 1.02214 1.21461 0.96302 0.99990 0.93963 0.90791 1.21762 0.77956 1.01215 0.99393 1.48051 1.07203 1.59874 1.17831 1.17912 0.85675 0.77937 0.83463 1.90820 1.74611 1.46598 1.28557 1.20032 0.94682 0.94291 1.08494 1.21065 0.93690 0.96866 0.93403 1.21166 0.94114 0.98393 1.04819 1.17471 0.77408 0.93797 0.98253 1.91566 1.28873 1.97096 1.92882 1.20996 0.93249 0.99705 1.07649 1.17159 0.89391 0.81386 0.96311 1.91604 1.82532 1.46051 1.89166 1.22144 0.98589 0.97575 0.84291 1.21927 0.96149 1.01276 0.97005 1.21366 0.94599 1.00189 0.94760 0.90988 1.20689 0.96763 0.93967 0.85116 1.42373 1.65985 1.28726 1.01772 1.20032 1.31947 1.08880 0.85244 0.91887 1.25744 0.99567 0.96603 1.02340 1.70901 1.40076 1.23083 1.24983 0.83253 0.75399 0.74932 0.75439 1.21022 1.22301 1.22301 0.91259 0.92824 0.92454 0.91109 0.88980 0.83080 0.83052 0.82643 0.90632 0.89477 0.91622 0.89542 0.95647 0.96495 0.80089 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.82 37.15 0.33 -1.40 16 2 C -0.10 -1.24 2.41 -90.50 -0.22 -1.46 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.41 5.70 -3.71 -0.02 1.39 16 5 N -0.60 -7.18 2.97 -173.98 -0.52 -7.69 16 6 C 0.56 7.50 6.91 -12.46 -0.09 7.41 16 7 O -0.53 -8.77 16.29 5.29 0.09 -8.68 16 8 C -0.17 -1.87 4.89 -104.91 -0.51 -2.38 16 9 C -0.03 -0.25 7.42 -39.21 -0.29 -0.54 16 10 C -0.17 -1.17 10.00 -39.58 -0.40 -1.57 16 11 C 0.15 1.24 7.30 -39.30 -0.29 0.96 16 12 F -0.13 -1.09 17.26 2.25 0.04 -1.05 16 13 C -0.20 -1.73 9.99 -39.50 -0.39 -2.13 16 14 C 0.18 1.97 7.27 -38.97 -0.28 1.69 16 15 F -0.12 -1.51 16.65 2.25 0.04 -1.47 16 16 C 0.10 1.04 5.53 -3.71 -0.02 1.02 16 17 C -0.13 -1.74 5.25 -26.61 -0.14 -1.88 16 18 C -0.09 -1.34 1.73 -90.58 -0.16 -1.49 16 19 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 20 C 0.16 3.15 5.41 -4.04 -0.02 3.13 16 21 N -0.74 -18.08 5.32 -59.91 -0.32 -18.40 16 22 C -0.33 -9.21 9.99 -15.06 -0.15 -9.36 16 23 H 0.06 1.75 7.83 -52.49 -0.41 1.34 16 24 C -0.05 -1.30 5.50 -17.43 -0.10 -1.39 16 25 N -0.94 -28.59 13.70 55.49 0.76 -27.83 16 26 Si 1.08 25.67 29.92 -169.99 -5.09 20.59 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 30 H 0.07 0.90 6.30 -51.93 -0.33 0.57 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.16 7.04 -51.93 -0.37 0.80 16 35 H 0.15 0.89 7.37 -52.48 -0.39 0.51 16 36 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.16 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.81 4.73 -51.93 -0.25 0.57 16 40 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 1.35 7.15 -51.93 -0.37 0.98 16 42 H 0.03 0.51 6.14 -51.93 -0.32 0.19 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.37 8.94 5.67 -40.82 -0.23 8.71 16 45 H 0.25 7.48 6.77 -40.82 -0.28 7.20 16 LS Contribution 367.80 15.07 5.54 5.54 Total: -1.00 -33.47 367.80 -8.16 -41.63 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -5.96 Total: 5.39 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -2.75 Total: -8.02 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: -0.08 Total: -53.92 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.08 Total: -2.52 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.09 Total: 20.59 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.47 -8.16 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185595071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.800 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds