Wall clock time and date at job start Tue Mar 31 2020 20:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.08997 * 109.50170 * 2 1 4 4 C 1.53197 * 109.50111 * 239.89858 * 2 1 3 5 5 N 1.46916 * 108.77914 * 185.41341 * 4 2 1 6 6 C 1.34772 * 120.63573 * 233.63136 * 5 4 2 7 7 O 1.21589 * 119.99721 * 355.84997 * 6 5 4 8 8 C 1.47571 * 120.00539 * 175.84921 * 6 5 4 9 9 C 1.39736 * 120.14146 * 54.27004 * 8 6 5 10 10 C 1.37731 * 119.90417 * 180.02562 * 9 8 6 11 11 C 1.38754 * 120.19342 * 0.02562 * 10 9 8 12 12 F 1.35101 * 119.85828 * 179.97438 * 11 10 9 13 13 C 1.38495 * 120.28935 * 0.02562 * 11 10 9 14 14 C 1.38198 * 120.08734 * 359.67267 * 13 11 10 15 15 F 1.35104 * 120.09875 * 180.32028 * 14 13 11 16 16 C 1.46933 * 118.73900 * 53.61179 * 5 4 2 17 17 C 1.53193 * 108.77092 * 306.38966 * 16 5 4 18 18 C 1.53038 * 109.49836 * 120.06320 * 2 1 3 19 19 H 1.09002 * 109.46169 * 61.31130 * 18 2 1 20 20 C 1.52998 * 109.46168 * 301.33663 * 18 2 1 21 21 N 1.46497 * 109.47789 * 174.99952 * 20 18 2 22 22 C 1.36931 * 120.00482 * 180.02562 * 21 20 18 23 23 H 1.08000 * 119.99831 * 0.02562 * 22 21 20 24 24 C 1.38814 * 120.00399 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99514 * 359.97438 * 24 22 21 26 26 Si 1.86791 * 120.00319 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47503 * 179.97438 * 26 24 22 28 28 H 1.48499 * 109.47392 * 300.00308 * 26 24 22 29 29 H 1.48506 * 109.47269 * 59.99696 * 26 24 22 30 30 H 1.08996 * 109.47590 * 299.93997 * 1 2 3 31 31 H 1.09002 * 109.47256 * 59.93861 * 1 2 3 32 32 H 1.09003 * 109.47573 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.58447 * 305.20594 * 4 2 1 34 34 H 1.09001 * 109.58575 * 65.48588 * 4 2 1 35 35 H 1.08005 * 120.04483 * 359.97438 * 9 8 6 36 36 H 1.08002 * 119.90106 * 180.02562 * 10 9 8 37 37 H 1.07996 * 119.95586 * 180.02562 * 13 11 10 38 38 H 1.09000 * 109.58613 * 66.17536 * 16 5 4 39 39 H 1.09003 * 109.58597 * 186.46268 * 16 5 4 40 40 H 1.08999 * 109.49801 * 294.68100 * 17 16 5 41 41 H 1.09005 * 109.49257 * 174.58888 * 17 16 5 42 42 H 1.09007 * 109.46708 * 54.99549 * 20 18 2 43 43 H 1.09001 * 109.46966 * 294.99928 * 20 18 2 44 44 H 0.97002 * 119.99421 * 0.02562 * 21 20 18 45 45 H 0.97004 * 120.00068 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7243 -1.2493 5 7 3.5045 -0.8295 -1.1693 6 6 4.2811 -0.3864 -2.1777 7 8 3.7710 0.0367 -3.1971 8 6 5.7505 -0.4146 -2.0447 9 6 6.4028 -1.6066 -1.7184 10 6 7.7744 -1.6272 -1.5950 11 6 8.5104 -0.4678 -1.7933 12 9 9.8555 -0.4957 -1.6700 13 6 7.8721 0.7182 -2.1159 14 6 6.4969 0.7510 -2.2488 15 9 5.8746 1.9064 -2.5699 16 6 4.1052 -1.4268 0.0313 17 6 3.5707 -0.6946 1.2662 18 6 2.0407 -0.7227 1.2485 19 1 1.6968 -1.7570 1.2357 20 6 1.5036 -0.0225 2.4984 21 7 1.8930 -0.7819 3.6891 22 6 1.5215 -0.3441 4.9322 23 1 0.9412 0.5609 5.0349 24 6 1.8900 -1.0640 6.0605 25 7 2.5960 -2.1677 5.9352 26 14 1.3827 -0.4671 7.7562 27 1 1.8964 -1.4060 8.7857 28 1 1.9466 0.8859 7.9940 29 1 -0.0989 -0.4070 7.8371 30 1 -0.3634 0.5129 0.8905 31 1 -0.3634 0.5148 -0.8894 32 1 -0.3634 -1.0277 -0.0005 33 1 1.6052 -1.7221 -1.2974 34 1 1.7616 -0.1600 -2.1390 35 1 5.8320 -2.5101 -1.5624 36 1 8.2785 -2.5486 -1.3432 37 1 8.4503 1.6173 -2.2694 38 1 3.8374 -2.4819 0.0876 39 1 5.1897 -1.3269 -0.0145 40 1 3.9158 0.3392 1.2540 41 1 3.9334 -1.1890 2.1675 42 1 0.4165 0.0353 2.4436 43 1 1.9184 0.9838 2.5576 44 1 2.4139 -1.5949 3.5968 45 1 2.8592 -2.4779 5.0546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185595071.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:09 Heat of formation + Delta-G solvation = -108.850574 kcal Electronic energy + Delta-G solvation = -29599.401884 eV Core-core repulsion = 25252.110379 eV Total energy + Delta-G solvation = -4347.291505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.24680 -50.15041 -41.76514 -39.84745 -38.98954 -36.85829 -35.26902 -33.58158 -32.33051 -31.96225 -31.71290 -28.26540 -27.85101 -25.69859 -24.92029 -24.25961 -23.70503 -22.89645 -21.44384 -20.60320 -19.36499 -19.32995 -18.68579 -18.34366 -17.54243 -17.07421 -16.92111 -16.86845 -16.46812 -16.13024 -16.00724 -15.92110 -15.62931 -15.57490 -15.31823 -15.13692 -14.62000 -14.54621 -14.35406 -13.98422 -13.81772 -13.58495 -13.31786 -13.16819 -12.96081 -12.75892 -12.69979 -12.60796 -12.55950 -12.08826 -11.90222 -11.81199 -11.66304 -11.43980 -11.17887 -11.11731 -10.88283 -10.24246 -9.99887 -9.76644 -9.06994 -8.38023 -5.31192 -0.53572 -0.17613 1.30829 1.59433 1.68373 1.74249 1.85207 2.19854 2.62593 2.71530 3.09262 3.18863 3.40547 3.42766 3.56841 3.65093 3.72459 3.77702 3.88412 3.96096 4.07581 4.20077 4.29790 4.40797 4.50098 4.52693 4.56204 4.60212 4.65155 4.69177 4.72299 4.76336 4.83207 4.87765 4.90546 5.00774 5.03106 5.11693 5.18040 5.27152 5.39160 5.49168 5.51867 5.60053 6.15184 6.53216 6.85495 7.12427 8.02909 8.13814 9.14377 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011958 B = 0.002973 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.994411 B = 9417.381026 C =10940.217643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.060 0.940 4 C 0.121 3.879 5 N -0.595 5.595 6 C 0.562 3.438 7 O -0.569 6.569 8 C -0.187 4.187 9 C -0.025 4.025 10 C -0.150 4.150 11 C 0.148 3.852 12 F -0.127 7.127 13 C -0.193 4.193 14 C 0.152 3.848 15 F -0.136 7.136 16 C 0.103 3.897 17 C -0.121 4.121 18 C -0.079 4.079 19 H 0.076 0.924 20 C 0.162 3.838 21 N -0.752 5.752 22 C -0.338 4.338 23 H 0.060 0.940 24 C -0.099 4.099 25 N -0.972 5.972 26 Si 1.124 2.876 27 H -0.291 1.291 28 H -0.281 1.281 29 H -0.280 1.280 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.177 0.823 36 H 0.184 0.816 37 H 0.168 0.832 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.051 0.949 41 H 0.069 0.931 42 H 0.025 0.975 43 H 0.004 0.996 44 H 0.364 0.636 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.501 -0.182 -19.070 21.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.078 0.922 4 C -0.001 4.001 5 N -0.326 5.326 6 C 0.350 3.650 7 O -0.449 6.449 8 C -0.191 4.191 9 C -0.043 4.043 10 C -0.168 4.168 11 C 0.129 3.871 12 F -0.105 7.105 13 C -0.213 4.213 14 C 0.132 3.868 15 F -0.114 7.114 16 C -0.018 4.018 17 C -0.160 4.160 18 C -0.098 4.098 19 H 0.094 0.906 20 C 0.036 3.964 21 N -0.397 5.397 22 C -0.469 4.469 23 H 0.078 0.922 24 C -0.290 4.290 25 N -0.620 5.620 26 Si 0.949 3.051 27 H -0.216 1.216 28 H -0.207 1.207 29 H -0.206 1.206 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.194 0.806 36 H 0.201 0.799 37 H 0.186 0.814 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.022 0.978 44 H 0.197 0.803 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.176 -0.018 -17.977 20.183 hybrid contribution 0.107 0.795 -1.516 1.715 sum 9.283 0.777 -19.493 21.605 Atomic orbital electron populations 1.21794 0.93216 1.02844 1.02284 1.21356 0.97040 0.99037 0.93380 0.92169 1.21748 0.78138 1.01991 0.98214 1.48110 1.07245 1.59410 1.17813 1.18271 0.86722 0.76998 0.82980 1.90791 1.75578 1.48381 1.30180 1.20027 0.93375 0.95514 1.10197 1.21339 0.94199 0.96451 0.92354 1.21503 0.93637 0.99007 1.02650 1.17604 0.77415 0.94038 0.98081 1.91571 1.28972 1.97098 1.92856 1.21103 0.92428 1.00748 1.06984 1.17433 0.90280 0.81058 0.98064 1.91546 1.83011 1.47170 1.89687 1.22197 0.99521 0.98078 0.82027 1.21832 0.95391 1.00740 0.98016 1.21244 0.95256 0.99918 0.93349 0.90564 1.20806 0.96694 0.93320 0.85603 1.42517 1.65921 1.29025 1.02214 1.20357 1.31145 1.08548 0.86854 0.92227 1.27081 0.99579 0.96458 1.05929 1.70994 1.41879 1.24411 1.24683 0.82662 0.76000 0.74931 0.71458 1.21648 1.20707 1.20580 0.92778 0.91155 0.91591 0.89134 0.89646 0.80551 0.79905 0.81406 0.88209 0.87637 0.93061 0.91285 0.95713 0.97793 0.80338 0.94343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 8.82 71.98 0.63 -2.60 16 2 C -0.09 -2.19 2.41 -10.72 -0.03 -2.21 16 3 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 4 C 0.12 2.70 5.70 86.37 0.49 3.20 16 5 N -0.60 -13.43 2.97 -822.61 -2.44 -15.88 16 6 C 0.56 14.57 6.91 86.71 0.60 15.17 16 7 O -0.57 -19.02 16.29 -4.00 -0.07 -19.09 16 8 C -0.19 -3.87 4.89 -20.05 -0.10 -3.97 16 9 C -0.03 -0.32 7.42 22.51 0.17 -0.16 16 10 C -0.15 -1.59 10.00 22.27 0.22 -1.37 16 11 C 0.15 2.11 7.30 22.45 0.16 2.27 16 12 F -0.13 -1.90 17.26 44.97 0.78 -1.13 16 13 C -0.19 -3.21 9.99 22.32 0.22 -2.99 16 14 C 0.15 3.33 7.27 22.66 0.16 3.50 16 15 F -0.14 -3.68 16.65 44.97 0.75 -2.93 16 16 C 0.10 2.00 5.53 86.36 0.48 2.48 16 17 C -0.12 -3.30 5.25 30.67 0.16 -3.14 16 18 C -0.08 -2.29 1.73 -10.77 -0.02 -2.31 16 19 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 20 C 0.16 6.35 5.41 86.38 0.47 6.82 16 21 N -0.75 -36.91 5.32 -343.46 -1.83 -38.73 16 22 C -0.34 -18.92 9.99 84.04 0.84 -18.08 16 23 H 0.06 3.31 7.83 -2.91 -0.02 3.29 16 24 C -0.10 -5.64 5.50 84.86 0.47 -5.18 16 25 N -0.97 -59.07 13.70 21.65 0.30 -58.77 16 26 Si 1.12 51.35 29.92 68.60 2.05 53.41 16 27 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 28 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 29 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 30 H 0.05 1.38 6.30 -2.39 -0.02 1.36 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.09 2.09 7.04 -2.39 -0.02 2.07 16 35 H 0.18 1.35 7.37 -2.91 -0.02 1.33 16 36 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 37 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.11 1.69 4.73 -2.39 -0.01 1.68 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.07 2.14 7.15 -2.38 -0.02 2.12 16 42 H 0.03 0.99 6.14 -2.38 -0.01 0.98 16 43 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.36 17.98 5.67 -92.71 -0.53 17.46 16 45 H 0.25 14.71 6.77 -92.71 -0.63 14.08 16 Total: -1.00 -73.38 367.80 5.12 -68.26 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.65 Total: 23.43 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 4.94 Total: -8.56 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -3.97 Total: -113.39 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: -0.07 Total: -19.09 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 1.53 Total: -4.06 kcal Atomic # 14 Polarization: 51.35 SS G_CDS: 2.05 Total: 53.41 kcal Total: -73.38 5.12 -68.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185595071.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.593 kcal (2) G-P(sol) polarization free energy of solvation -73.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds