Wall clock time and date at job start Tue Mar 31 2020 20:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.49786 * 2 1 4 4 C 1.53193 * 109.49556 * 120.05874 * 2 1 3 5 5 N 1.46917 * 108.77767 * 174.58905 * 4 2 1 6 6 C 1.34778 * 120.63452 * 126.41452 * 5 4 2 7 7 O 1.21592 * 119.99343 * 354.16812 * 6 5 4 8 8 C 1.47562 * 120.00520 * 174.16527 * 6 5 4 9 9 C 1.39734 * 120.14284 * 306.19398 * 8 6 5 10 10 C 1.37740 * 119.90549 * 180.02562 * 9 8 6 11 11 C 1.38754 * 120.19166 * 359.96910 * 10 9 8 12 12 F 1.35103 * 119.85942 * 180.02562 * 11 10 9 13 13 C 1.38500 * 120.28836 * 0.05132 * 11 10 9 14 14 C 1.38196 * 120.09102 * 359.67522 * 13 11 10 15 15 F 1.35101 * 120.10005 * 180.32427 * 14 13 11 16 16 C 1.46932 * 118.74131 * 306.39110 * 5 4 2 17 17 C 1.53193 * 108.76966 * 53.60744 * 16 5 4 18 18 C 1.53043 * 109.34096 * 305.34884 * 17 16 5 19 19 H 1.08997 * 109.45848 * 301.35940 * 18 17 16 20 20 C 1.53007 * 109.45820 * 181.40360 * 18 17 16 21 21 N 1.46499 * 109.47002 * 65.00133 * 20 18 17 22 22 C 1.36932 * 119.99804 * 179.97438 * 21 20 18 23 23 H 1.08010 * 120.00118 * 0.02562 * 22 21 20 24 24 C 1.38814 * 120.00169 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00264 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 119.99795 * 0.02562 * 24 22 21 27 27 H 1.48491 * 109.47380 * 89.99831 * 26 24 22 28 28 H 1.48503 * 109.46805 * 210.00150 * 26 24 22 29 29 H 1.48501 * 109.46821 * 329.99614 * 26 24 22 30 30 H 1.08990 * 109.48120 * 299.93953 * 1 2 3 31 31 H 1.09004 * 109.46867 * 59.94198 * 1 2 3 32 32 H 1.09007 * 109.46942 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.58870 * 54.79917 * 4 2 1 34 34 H 1.09004 * 109.70801 * 294.45102 * 4 2 1 35 35 H 1.08003 * 120.04596 * 359.97278 * 9 8 6 36 36 H 1.08003 * 119.90061 * 179.97438 * 10 9 8 37 37 H 1.07994 * 119.95384 * 179.97438 * 13 11 10 38 38 H 1.08998 * 109.58610 * 293.82218 * 16 5 4 39 39 H 1.08991 * 109.58586 * 173.39060 * 16 5 4 40 40 H 1.09000 * 109.49930 * 65.31826 * 17 16 5 41 41 H 1.09003 * 109.49778 * 185.37992 * 17 16 5 42 42 H 1.08999 * 109.46431 * 184.99951 * 20 18 17 43 43 H 1.09003 * 109.46806 * 304.99850 * 20 18 17 44 44 H 0.97000 * 119.99754 * 359.97438 * 21 20 18 45 45 H 0.97001 * 120.00012 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7233 1.2499 5 7 3.5045 -0.8287 1.1700 6 6 4.2810 -0.3856 2.1786 7 8 3.7804 0.2020 3.1181 8 6 5.7384 -0.6137 2.1428 9 6 6.2424 -1.9048 1.9651 10 6 7.6037 -2.1122 1.9330 11 6 8.4761 -1.0427 2.0760 12 9 9.8101 -1.2537 2.0429 13 6 7.9852 0.2403 2.2530 14 6 6.6216 0.4626 2.2814 15 9 6.1425 1.7149 2.4475 16 6 4.1053 -1.4267 -0.0300 17 6 3.5709 -0.6954 -1.2655 18 6 2.0408 -0.7235 -1.2488 19 1 1.6968 -1.7577 -1.2355 20 6 1.5045 -0.0243 -2.4996 21 7 1.8933 -0.7857 -3.6893 22 6 1.5223 -0.3491 -4.9330 23 1 0.9435 0.5569 -5.0369 24 6 1.8911 -1.0702 -6.0603 25 7 1.5342 -0.6509 -7.2558 26 14 2.8928 -2.6367 -5.8806 27 1 1.9766 -3.7971 -5.7428 28 1 3.7457 -2.8194 -7.0825 29 1 3.7526 -2.5387 -4.6738 30 1 -0.3635 0.5128 0.8904 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6052 -1.7211 1.2987 34 1 1.7635 -0.1594 2.1404 35 1 5.5655 -2.7390 1.8540 36 1 7.9932 -3.1102 1.7961 37 1 8.6691 1.0687 2.3641 38 1 3.8376 -2.4818 -0.0856 39 1 5.1895 -1.3245 0.0145 40 1 3.9159 0.3384 -1.2540 41 1 3.9340 -1.1900 -2.1665 42 1 0.4175 0.0345 -2.4450 43 1 1.9202 0.9815 -2.5600 44 1 2.4134 -1.5991 -3.5959 45 1 1.7922 -1.1546 -8.0436 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185595072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:14 Heat of formation + Delta-G solvation = -87.366647 kcal Electronic energy + Delta-G solvation = -29614.658642 eV Core-core repulsion = 25268.298749 eV Total energy + Delta-G solvation = -4346.359892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -49.53211 -49.39408 -40.80488 -38.99580 -37.95540 -35.23863 -33.79972 -32.14992 -31.63987 -31.09086 -30.72034 -27.28411 -26.92636 -24.51736 -23.64960 -23.27711 -22.55845 -21.31025 -20.42591 -19.60779 -18.63889 -17.94268 -17.65572 -17.43587 -16.65116 -16.27611 -16.19432 -15.70544 -15.35665 -15.07172 -14.90430 -14.84373 -14.52864 -14.31665 -14.23034 -13.80514 -13.43119 -13.31571 -13.11457 -12.92197 -12.82484 -12.54126 -12.40935 -12.07478 -12.00352 -11.93984 -11.74761 -11.36990 -11.02797 -10.92777 -10.55961 -10.47824 -10.21942 -10.19062 -10.07330 -9.62435 -9.60525 -9.26510 -8.92450 -8.79059 -7.24363 -5.79080 -3.14387 0.15061 0.44972 2.22951 2.58984 2.91937 3.29226 3.31387 3.34661 3.41435 3.80164 3.96261 4.03855 4.29594 4.55277 4.55605 4.63674 4.73423 4.81764 4.92459 5.09044 5.14759 5.19050 5.26311 5.30940 5.34841 5.42379 5.45968 5.50578 5.56530 5.63756 5.67323 5.72607 5.75008 5.85951 6.06554 6.11920 6.14307 6.17413 6.29292 6.34683 6.39581 6.70574 6.78259 7.09499 7.81827 7.97637 8.40006 9.19166 9.91305 10.11276 11.39582 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011585 B = 0.003231 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.382854 B = 8665.136011 C =10233.601887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 H 0.076 0.924 4 C 0.118 3.882 5 N -0.599 5.599 6 C 0.563 3.437 7 O -0.527 6.527 8 C -0.171 4.171 9 C -0.030 4.030 10 C -0.167 4.167 11 C 0.150 3.850 12 F -0.126 7.126 13 C -0.196 4.196 14 C 0.178 3.822 15 F -0.115 7.115 16 C 0.100 3.900 17 C -0.129 4.129 18 C -0.093 4.093 19 H 0.073 0.927 20 C 0.160 3.840 21 N -0.755 5.755 22 C -0.243 4.243 23 H 0.089 0.911 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.885 3.115 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.278 1.278 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.034 0.966 43 H 0.025 0.975 44 H 0.359 0.641 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.185 -3.695 22.559 25.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.004 4.004 5 N -0.331 5.331 6 C 0.350 3.650 7 O -0.404 6.404 8 C -0.175 4.175 9 C -0.048 4.048 10 C -0.186 4.186 11 C 0.130 3.870 12 F -0.104 7.104 13 C -0.216 4.216 14 C 0.157 3.843 15 F -0.093 7.093 16 C -0.022 4.022 17 C -0.167 4.167 18 C -0.112 4.112 19 H 0.091 0.909 20 C 0.034 3.966 21 N -0.401 5.401 22 C -0.373 4.373 23 H 0.107 0.893 24 C -0.192 4.192 25 N -0.583 5.583 26 Si 0.715 3.285 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.168 0.832 36 H 0.169 0.831 37 H 0.174 0.826 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.051 0.949 43 H 0.043 0.957 44 H 0.192 0.808 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.828 -3.194 22.878 25.512 hybrid contribution 1.018 -0.936 -0.190 1.396 sum 11.846 -4.130 22.688 25.926 Atomic orbital electron populations 1.21836 0.94069 1.02260 1.02359 1.21459 0.96352 1.00100 0.93748 0.90593 1.21781 0.77897 1.01152 0.99587 1.48055 1.07236 1.60155 1.17677 1.17919 0.85497 0.78844 0.82699 1.90824 1.74496 1.40624 1.34448 1.20046 0.94215 0.94082 1.09176 1.21039 0.94953 0.95333 0.93516 1.21160 0.92840 0.99519 1.05040 1.17478 0.77737 0.93146 0.98594 1.91567 1.30098 1.95504 1.93265 1.21007 0.94530 0.97916 1.08145 1.17187 0.90579 0.79405 0.97084 1.91609 1.88532 1.37293 1.91838 1.22021 0.98359 0.97516 0.84302 1.21968 0.96274 1.01551 0.96885 1.21416 0.94523 1.00286 0.94980 0.90906 1.20737 0.97288 0.94111 0.84512 1.42720 1.66124 1.28619 1.02633 1.19068 1.28349 1.07937 0.81923 0.89285 1.24678 1.00736 0.98715 0.95113 1.69702 1.50923 1.40604 0.97064 0.86546 0.80401 0.84724 0.76795 1.21109 1.21763 1.20419 0.92811 0.91095 0.92465 0.91114 0.88894 0.83190 0.83134 0.82629 0.90791 0.89784 0.91284 0.89716 0.94858 0.95706 0.80776 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.82 37.16 0.33 -1.30 16 2 C -0.10 -1.15 2.42 -90.47 -0.22 -1.37 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.12 1.30 5.73 -3.71 -0.02 1.28 16 5 N -0.60 -6.72 2.97 -173.99 -0.52 -7.24 16 6 C 0.56 7.13 6.88 -12.46 -0.09 7.05 16 7 O -0.53 -8.46 16.28 5.28 0.09 -8.38 16 8 C -0.17 -1.76 4.61 -104.91 -0.48 -2.24 16 9 C -0.03 -0.22 7.77 -39.20 -0.30 -0.52 16 10 C -0.17 -1.07 10.01 -39.57 -0.40 -1.46 16 11 C 0.15 1.16 7.30 -39.29 -0.29 0.87 16 12 F -0.13 -1.03 17.26 2.25 0.04 -0.99 16 13 C -0.20 -1.63 9.99 -39.50 -0.39 -2.03 16 14 C 0.18 1.87 7.27 -38.97 -0.28 1.59 16 15 F -0.11 -1.45 16.65 2.25 0.04 -1.41 16 16 C 0.10 1.00 5.56 -3.71 -0.02 0.98 16 17 C -0.13 -1.67 5.25 -26.61 -0.14 -1.81 16 18 C -0.09 -1.28 1.73 -90.54 -0.16 -1.44 16 19 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 20 C 0.16 2.92 5.41 -4.04 -0.02 2.90 16 21 N -0.76 -17.15 5.12 -59.90 -0.31 -17.46 16 22 C -0.24 -6.75 10.47 -15.06 -0.16 -6.91 16 23 H 0.09 2.67 8.06 -52.48 -0.42 2.25 16 24 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 25 N -0.93 -29.11 13.97 55.49 0.78 -28.34 16 26 Si 0.88 21.45 27.74 -169.99 -4.71 16.73 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.86 6.31 -51.93 -0.33 0.54 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.11 7.00 -51.93 -0.36 0.74 16 35 H 0.15 0.78 7.75 -52.48 -0.41 0.38 16 36 H 0.15 0.61 8.06 -52.48 -0.42 0.19 16 37 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.74 5.38 -51.93 -0.28 0.46 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 1.22 7.15 -51.93 -0.37 0.85 16 42 H 0.03 0.62 6.15 -51.93 -0.32 0.30 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.36 7.84 4.71 -40.82 -0.19 7.65 16 45 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 367.50 15.07 5.54 5.54 Total: -1.00 -33.37 367.50 -7.88 -41.25 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.08 Total: 4.71 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -2.74 Total: -4.41 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.05 Total: -53.04 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.08 Total: -2.40 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.71 Total: 16.73 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.37 -7.88 -41.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185595072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.115 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds