Wall clock time and date at job start Tue Mar 31 2020 20:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.49786 * 2 1 4 4 C 1.53193 * 109.49556 * 120.05874 * 2 1 3 5 5 N 1.46917 * 108.77767 * 174.58905 * 4 2 1 6 6 C 1.34778 * 120.63452 * 126.41452 * 5 4 2 7 7 O 1.21592 * 119.99343 * 354.16812 * 6 5 4 8 8 C 1.47562 * 120.00520 * 174.16527 * 6 5 4 9 9 C 1.39734 * 120.14284 * 306.19398 * 8 6 5 10 10 C 1.37740 * 119.90549 * 180.02562 * 9 8 6 11 11 C 1.38754 * 120.19166 * 359.96910 * 10 9 8 12 12 F 1.35103 * 119.85942 * 180.02562 * 11 10 9 13 13 C 1.38500 * 120.28836 * 0.05132 * 11 10 9 14 14 C 1.38196 * 120.09102 * 359.67522 * 13 11 10 15 15 F 1.35101 * 120.10005 * 180.32427 * 14 13 11 16 16 C 1.46932 * 118.74131 * 306.39110 * 5 4 2 17 17 C 1.53193 * 108.76966 * 53.60744 * 16 5 4 18 18 C 1.53043 * 109.34096 * 305.34884 * 17 16 5 19 19 H 1.08997 * 109.45848 * 301.35940 * 18 17 16 20 20 C 1.53007 * 109.45820 * 181.40360 * 18 17 16 21 21 N 1.46499 * 109.47002 * 65.00133 * 20 18 17 22 22 C 1.36932 * 119.99804 * 179.97438 * 21 20 18 23 23 H 1.08010 * 120.00118 * 0.02562 * 22 21 20 24 24 C 1.38814 * 120.00169 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00264 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 119.99795 * 0.02562 * 24 22 21 27 27 H 1.48491 * 109.47380 * 89.99831 * 26 24 22 28 28 H 1.48503 * 109.46805 * 210.00150 * 26 24 22 29 29 H 1.48501 * 109.46821 * 329.99614 * 26 24 22 30 30 H 1.08990 * 109.48120 * 299.93953 * 1 2 3 31 31 H 1.09004 * 109.46867 * 59.94198 * 1 2 3 32 32 H 1.09007 * 109.46942 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.58870 * 54.79917 * 4 2 1 34 34 H 1.09004 * 109.70801 * 294.45102 * 4 2 1 35 35 H 1.08003 * 120.04596 * 359.97278 * 9 8 6 36 36 H 1.08003 * 119.90061 * 179.97438 * 10 9 8 37 37 H 1.07994 * 119.95384 * 179.97438 * 13 11 10 38 38 H 1.08998 * 109.58610 * 293.82218 * 16 5 4 39 39 H 1.08991 * 109.58586 * 173.39060 * 16 5 4 40 40 H 1.09000 * 109.49930 * 65.31826 * 17 16 5 41 41 H 1.09003 * 109.49778 * 185.37992 * 17 16 5 42 42 H 1.08999 * 109.46431 * 184.99951 * 20 18 17 43 43 H 1.09003 * 109.46806 * 304.99850 * 20 18 17 44 44 H 0.97000 * 119.99754 * 359.97438 * 21 20 18 45 45 H 0.97001 * 120.00012 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7233 1.2499 5 7 3.5045 -0.8287 1.1700 6 6 4.2810 -0.3856 2.1786 7 8 3.7804 0.2020 3.1181 8 6 5.7384 -0.6137 2.1428 9 6 6.2424 -1.9048 1.9651 10 6 7.6037 -2.1122 1.9330 11 6 8.4761 -1.0427 2.0760 12 9 9.8101 -1.2537 2.0429 13 6 7.9852 0.2403 2.2530 14 6 6.6216 0.4626 2.2814 15 9 6.1425 1.7149 2.4475 16 6 4.1053 -1.4267 -0.0300 17 6 3.5709 -0.6954 -1.2655 18 6 2.0408 -0.7235 -1.2488 19 1 1.6968 -1.7577 -1.2355 20 6 1.5045 -0.0243 -2.4996 21 7 1.8933 -0.7857 -3.6893 22 6 1.5223 -0.3491 -4.9330 23 1 0.9435 0.5569 -5.0369 24 6 1.8911 -1.0702 -6.0603 25 7 1.5342 -0.6509 -7.2558 26 14 2.8928 -2.6367 -5.8806 27 1 1.9766 -3.7971 -5.7428 28 1 3.7457 -2.8194 -7.0825 29 1 3.7526 -2.5387 -4.6738 30 1 -0.3635 0.5128 0.8904 31 1 -0.3633 0.5148 -0.8895 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6052 -1.7211 1.2987 34 1 1.7635 -0.1594 2.1404 35 1 5.5655 -2.7390 1.8540 36 1 7.9932 -3.1102 1.7961 37 1 8.6691 1.0687 2.3641 38 1 3.8376 -2.4818 -0.0856 39 1 5.1895 -1.3245 0.0145 40 1 3.9159 0.3384 -1.2540 41 1 3.9340 -1.1900 -2.1665 42 1 0.4175 0.0345 -2.4450 43 1 1.9202 0.9815 -2.5600 44 1 2.4134 -1.5991 -3.5959 45 1 1.7922 -1.1546 -8.0436 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185595072.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:13 Heat of formation + Delta-G solvation = -107.653019 kcal Electronic energy + Delta-G solvation = -29615.538325 eV Core-core repulsion = 25268.298749 eV Total energy + Delta-G solvation = -4347.239575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.22247 -50.13001 -41.69127 -39.81085 -38.93683 -36.71920 -35.10008 -33.65029 -32.37409 -32.27835 -31.72852 -28.68283 -27.80049 -25.66079 -24.64980 -24.18794 -23.64295 -22.69302 -21.44568 -20.58694 -19.62673 -19.31222 -18.61837 -18.30168 -17.51032 -17.04080 -16.86771 -16.67724 -16.45284 -16.28444 -15.88163 -15.82199 -15.61666 -15.53863 -15.11739 -14.94679 -14.66199 -14.52027 -14.29418 -14.03692 -13.85975 -13.55726 -13.30596 -13.19844 -13.11630 -12.89892 -12.77510 -12.65831 -12.58727 -12.15340 -11.97921 -11.84061 -11.63371 -11.56504 -11.24958 -11.12925 -10.90905 -10.23839 -9.95564 -9.71665 -9.26092 -8.00677 -5.34590 -0.50798 -0.14148 1.35649 1.38809 1.45351 1.52607 1.79397 2.23436 2.51521 2.65622 3.13805 3.22805 3.30622 3.46135 3.52956 3.70642 3.76731 3.82334 3.93590 4.00215 4.04902 4.26812 4.36108 4.46414 4.54332 4.58517 4.60787 4.66925 4.72390 4.73862 4.78636 4.82072 4.86727 4.91365 4.98165 5.06802 5.09469 5.18831 5.24647 5.34305 5.46201 5.53984 5.57235 5.77506 6.20455 6.22931 6.90812 7.10554 7.85612 8.07463 9.21248 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011585 B = 0.003231 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.382854 B = 8665.136011 C =10233.601887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.057 0.943 4 C 0.121 3.879 5 N -0.596 5.596 6 C 0.561 3.439 7 O -0.571 6.571 8 C -0.186 4.186 9 C -0.020 4.020 10 C -0.149 4.149 11 C 0.148 3.852 12 F -0.128 7.128 13 C -0.195 4.195 14 C 0.150 3.850 15 F -0.137 7.137 16 C 0.105 3.895 17 C -0.128 4.128 18 C -0.082 4.082 19 H 0.088 0.912 20 C 0.158 3.842 21 N -0.753 5.753 22 C -0.237 4.237 23 H 0.049 0.951 24 C -0.068 4.068 25 N -0.988 5.988 26 Si 0.959 3.041 27 H -0.276 1.276 28 H -0.299 1.299 29 H -0.240 1.240 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.179 0.821 36 H 0.184 0.816 37 H 0.166 0.834 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.051 0.949 41 H 0.076 0.924 42 H 0.031 0.969 43 H 0.008 0.992 44 H 0.369 0.631 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.930 -7.241 24.258 28.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.075 0.925 4 C -0.001 4.001 5 N -0.327 5.327 6 C 0.350 3.650 7 O -0.451 6.451 8 C -0.190 4.190 9 C -0.038 4.038 10 C -0.167 4.167 11 C 0.128 3.872 12 F -0.106 7.106 13 C -0.214 4.214 14 C 0.130 3.870 15 F -0.116 7.116 16 C -0.016 4.016 17 C -0.166 4.166 18 C -0.101 4.101 19 H 0.106 0.894 20 C 0.032 3.968 21 N -0.399 5.399 22 C -0.368 4.368 23 H 0.067 0.933 24 C -0.259 4.259 25 N -0.639 5.639 26 Si 0.785 3.215 27 H -0.202 1.202 28 H -0.226 1.226 29 H -0.164 1.164 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.101 0.899 35 H 0.196 0.804 36 H 0.201 0.799 37 H 0.183 0.817 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.049 0.951 43 H 0.026 0.974 44 H 0.203 0.797 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.580 -6.742 24.619 28.457 hybrid contribution 0.436 0.285 -0.734 0.900 sum 13.016 -6.457 23.884 27.956 Atomic orbital electron populations 1.21806 0.93315 1.03015 1.02136 1.21358 0.96950 0.99043 0.93549 0.92471 1.21769 0.78067 1.02127 0.98164 1.48124 1.07257 1.59586 1.17691 1.18296 0.86517 0.77955 0.82262 1.90797 1.75498 1.42599 1.36240 1.20035 0.92706 0.95418 1.10825 1.21329 0.95753 0.94523 0.92241 1.21502 0.92130 1.00453 1.02644 1.17621 0.77858 0.93264 0.98476 1.91570 1.30311 1.95463 1.93258 1.21097 0.93783 0.98942 1.07602 1.17480 0.91594 0.78862 0.99079 1.91547 1.88903 1.38750 1.92354 1.22121 0.99146 0.98407 0.81944 1.21923 0.95445 1.01027 0.98254 1.21314 0.95220 1.00496 0.93058 0.89380 1.20869 0.97218 0.93510 0.85178 1.42644 1.66059 1.29198 1.02005 1.19020 1.27074 1.06421 0.84296 0.93334 1.25608 1.02710 1.03122 0.94458 1.69912 1.53074 1.42711 0.98169 0.85352 0.78896 0.79378 0.77840 1.20187 1.22587 1.16422 0.91539 0.92859 0.91175 0.88571 0.89933 0.80404 0.79889 0.81651 0.87630 0.88215 0.93040 0.90538 0.95121 0.97364 0.79739 0.93373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.82 71.98 0.63 -2.37 16 2 C -0.09 -2.01 2.42 -10.70 -0.03 -2.04 16 3 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 4 C 0.12 2.39 5.73 86.36 0.49 2.88 16 5 N -0.60 -11.94 2.97 -822.63 -2.44 -14.38 16 6 C 0.56 13.51 6.88 86.70 0.60 14.11 16 7 O -0.57 -18.41 16.28 -4.01 -0.07 -18.48 16 8 C -0.19 -3.48 4.61 -20.05 -0.09 -3.57 16 9 C -0.02 -0.21 7.77 22.51 0.17 -0.04 16 10 C -0.15 -1.26 10.01 22.28 0.22 -1.04 16 11 C 0.15 1.85 7.30 22.46 0.16 2.02 16 12 F -0.13 -1.73 17.26 44.97 0.78 -0.96 16 13 C -0.19 -2.98 9.99 22.32 0.22 -2.76 16 14 C 0.15 3.08 7.27 22.67 0.16 3.25 16 15 F -0.14 -3.61 16.65 44.97 0.75 -2.86 16 16 C 0.11 1.71 5.56 86.36 0.48 2.19 16 17 C -0.13 -3.03 5.25 30.67 0.16 -2.87 16 18 C -0.08 -2.10 1.73 -10.74 -0.02 -2.12 16 19 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 20 C 0.16 5.74 5.41 86.38 0.47 6.21 16 21 N -0.75 -33.55 5.12 -343.43 -1.76 -35.31 16 22 C -0.24 -13.43 10.47 84.03 0.88 -12.55 16 23 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 24 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 25 N -0.99 -63.20 13.97 21.65 0.30 -62.90 16 26 Si 0.96 43.34 27.74 68.60 1.90 45.24 16 27 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 28 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 29 H -0.24 -9.26 6.52 99.48 0.65 -8.61 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.29 6.31 -2.38 -0.02 1.27 16 32 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 1.87 7.00 -2.39 -0.02 1.85 16 35 H 0.18 0.86 7.75 -2.91 -0.02 0.84 16 36 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 37 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.10 1.35 5.38 -2.39 -0.01 1.34 16 40 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 41 H 0.08 1.96 7.15 -2.39 -0.02 1.94 16 42 H 0.03 1.15 6.15 -2.39 -0.01 1.13 16 43 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.37 15.04 4.71 -92.71 -0.44 14.60 16 45 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -76.40 367.50 4.99 -71.41 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.53 Total: 20.41 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 4.99 Total: -2.17 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -3.90 Total: -112.60 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.07 Total: -18.48 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 1.53 Total: -3.82 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.90 Total: 45.24 kcal Total: -76.40 4.99 -71.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185595072.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.239 kcal (2) G-P(sol) polarization free energy of solvation -76.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds