Wall clock time and date at job start Tue Mar 31 2020 20:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.52649 * 2 1 4 4 C 1.53193 * 109.49655 * 120.07545 * 2 1 3 5 5 N 1.46926 * 108.77477 * 65.31999 * 4 2 1 6 6 C 1.34779 * 120.63111 * 233.63236 * 5 4 2 7 7 O 1.21585 * 119.99890 * 174.16511 * 6 5 4 8 8 C 1.47568 * 119.99699 * 354.15939 * 6 5 4 9 9 C 1.39736 * 120.14145 * 306.19425 * 8 6 5 10 10 C 1.37737 * 119.90268 * 180.02562 * 9 8 6 11 11 C 1.38762 * 120.19347 * 359.97438 * 10 9 8 12 12 F 1.35102 * 119.86110 * 180.02562 * 11 10 9 13 13 C 1.38502 * 120.28577 * 0.04399 * 11 10 9 14 14 C 1.38200 * 120.08726 * 359.67748 * 13 11 10 15 15 F 1.35106 * 120.09348 * 180.31521 * 14 13 11 16 16 C 1.46925 * 118.74071 * 53.60364 * 5 4 2 17 17 C 1.53194 * 108.78008 * 306.39455 * 16 5 4 18 18 C 1.53044 * 109.50164 * 239.91448 * 2 1 3 19 19 H 1.08999 * 109.46345 * 181.38956 * 18 2 1 20 20 C 1.53004 * 109.44419 * 61.42850 * 18 2 1 21 21 N 1.46500 * 109.46608 * 174.97081 * 20 18 2 22 22 C 1.36945 * 119.99534 * 180.02562 * 21 20 18 23 23 H 1.07996 * 120.00119 * 359.97438 * 22 21 20 24 24 C 1.38820 * 119.99640 * 179.97438 * 22 21 20 25 25 N 1.31615 * 119.99783 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99552 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46957 * 60.00429 * 26 24 22 28 28 H 1.48503 * 109.46791 * 180.02562 * 26 24 22 29 29 H 1.48491 * 109.47352 * 299.99905 * 26 24 22 30 30 H 1.09000 * 109.47038 * 180.08271 * 1 2 3 31 31 H 1.08998 * 109.47227 * 300.08609 * 1 2 3 32 32 H 1.09002 * 109.46852 * 60.08143 * 1 2 3 33 33 H 1.08992 * 109.58949 * 305.53265 * 4 2 1 34 34 H 1.08999 * 109.58884 * 185.09959 * 4 2 1 35 35 H 1.07992 * 120.04775 * 359.97438 * 9 8 6 36 36 H 1.07998 * 119.90517 * 180.02562 * 10 9 8 37 37 H 1.07996 * 119.95621 * 180.02562 * 13 11 10 38 38 H 1.08998 * 109.58899 * 186.60325 * 16 5 4 39 39 H 1.09008 * 109.58675 * 66.18389 * 16 5 4 40 40 H 1.09001 * 109.49515 * 294.68576 * 17 16 5 41 41 H 1.08993 * 109.52447 * 174.59988 * 17 16 5 42 42 H 1.09003 * 109.46804 * 294.96440 * 20 18 2 43 43 H 1.08999 * 109.47336 * 54.96643 * 20 18 2 44 44 H 0.96994 * 120.00670 * 359.97438 * 21 20 18 45 45 H 0.97007 * 119.99454 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7237 1.2497 5 7 1.6515 -2.1381 1.1697 6 6 0.9739 -2.7217 2.1781 7 8 0.5647 -3.8602 2.0567 8 6 0.7288 -1.9789 3.4294 9 6 1.7957 -1.4018 4.1232 10 6 1.5613 -0.7100 5.2910 11 6 0.2689 -0.5842 5.7802 12 9 0.0467 0.0963 6.9261 13 6 -0.7943 -1.1534 5.0991 14 6 -0.5732 -1.8451 3.9233 15 9 -1.6110 -2.3949 3.2555 16 6 2.0140 -2.9040 -0.0306 17 6 1.5030 -2.1559 -1.2659 18 6 2.0409 -0.7232 -1.2483 19 1 3.1306 -0.7444 -1.2353 20 6 1.5605 0.0170 -2.4982 21 7 2.1471 -0.6034 -3.6887 22 6 1.8588 -0.1069 -4.9320 23 1 1.1988 0.7417 -5.0349 24 6 2.4150 -0.6944 -6.0600 25 7 3.2190 -1.7289 -5.9346 26 14 2.0212 -0.0176 -7.7560 27 1 2.4581 1.3995 -7.8371 28 1 2.7346 -0.8157 -8.7853 29 1 0.5578 -0.0988 -7.9938 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3633 0.5152 0.8892 32 1 -0.3633 0.5126 -0.8907 33 1 1.6007 -0.2730 2.1389 34 1 3.1274 -0.6463 1.2981 35 1 2.8025 -1.4987 3.7448 36 1 2.3858 -0.2636 5.8271 37 1 -1.7980 -1.0518 5.4845 38 1 1.5554 -3.8918 0.0140 39 1 3.0980 -3.0043 -0.0865 40 1 0.4132 -2.1356 -1.2540 41 1 1.8476 -2.6628 -2.1672 42 1 0.4735 -0.0383 -2.5579 43 1 1.8687 1.0611 -2.4432 44 1 2.7402 -1.3653 -3.5963 45 1 3.6080 -2.1392 -6.7229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185595073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:18 Heat of formation + Delta-G solvation = -88.252094 kcal Electronic energy + Delta-G solvation = -29720.976852 eV Core-core repulsion = 25374.578564 eV Total energy + Delta-G solvation = -4346.398288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.54057 -49.36946 -40.81553 -38.98955 -37.93016 -35.03372 -33.27757 -32.31464 -31.47601 -31.08741 -30.15307 -27.13263 -26.75319 -24.57633 -23.71541 -23.52601 -22.65287 -21.57821 -20.39107 -18.85182 -18.46085 -17.90457 -17.56796 -16.86033 -16.57595 -16.24005 -16.17537 -15.71953 -15.36267 -15.07711 -14.94635 -14.80037 -14.45164 -14.25329 -14.04791 -13.82910 -13.49725 -13.38307 -13.01705 -12.81065 -12.61104 -12.46154 -12.34254 -12.14499 -11.98787 -11.72484 -11.43562 -11.06738 -10.95765 -10.77402 -10.45411 -10.29491 -10.11861 -10.09476 -9.96831 -9.68558 -9.58318 -9.24686 -8.85823 -8.68283 -6.91079 -5.76735 -3.04794 0.16616 0.45407 2.30151 2.66804 2.96625 3.30080 3.43942 3.48442 3.49323 3.81338 4.00289 4.06444 4.29605 4.55883 4.57251 4.66872 4.87135 4.91087 5.11243 5.19461 5.20340 5.26351 5.33153 5.35753 5.42010 5.47420 5.53329 5.56309 5.61381 5.67164 5.83220 5.86998 6.00096 6.06806 6.12599 6.20045 6.26307 6.34228 6.35789 6.50295 6.68755 6.79437 6.92440 7.20779 7.69542 7.91978 8.42717 9.53721 10.12062 10.46418 11.46183 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024396 B = 0.002414 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.445822 B =11595.173885 C =11827.672608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 H 0.084 0.916 4 C 0.107 3.893 5 N -0.595 5.595 6 C 0.561 3.439 7 O -0.526 6.526 8 C -0.168 4.168 9 C -0.030 4.030 10 C -0.167 4.167 11 C 0.148 3.852 12 F -0.127 7.127 13 C -0.197 4.197 14 C 0.177 3.823 15 F -0.114 7.114 16 C 0.111 3.889 17 C -0.127 4.127 18 C -0.089 4.089 19 H 0.072 0.928 20 C 0.159 3.841 21 N -0.732 5.732 22 C -0.239 4.239 23 H 0.068 0.932 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.021 0.979 43 H 0.017 0.983 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.901 3.021 26.330 26.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 H 0.102 0.898 4 C -0.016 4.016 5 N -0.327 5.327 6 C 0.348 3.652 7 O -0.403 6.403 8 C -0.172 4.172 9 C -0.049 4.049 10 C -0.186 4.186 11 C 0.128 3.872 12 F -0.105 7.105 13 C -0.217 4.217 14 C 0.157 3.843 15 F -0.092 7.092 16 C -0.010 4.010 17 C -0.165 4.165 18 C -0.108 4.108 19 H 0.091 0.909 20 C 0.031 3.969 21 N -0.376 5.376 22 C -0.370 4.370 23 H 0.086 0.914 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.168 0.832 36 H 0.168 0.832 37 H 0.173 0.827 38 H 0.110 0.890 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.039 0.961 43 H 0.035 0.965 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.230 2.497 26.115 26.432 hybrid contribution -0.246 0.267 -0.872 0.945 sum -3.476 2.764 25.242 25.630 Atomic orbital electron populations 1.21899 0.94888 1.02223 1.01567 1.21472 0.96653 0.99498 0.94176 0.89789 1.21998 1.00069 0.80230 0.99293 1.48031 1.55189 1.11654 1.17873 1.17904 0.78372 0.86132 0.82802 1.90835 1.50106 1.18141 1.81209 1.20096 0.93055 1.04867 0.99194 1.21046 0.98787 0.92248 0.92827 1.21148 0.95882 1.03368 0.98196 1.17473 0.93383 0.93124 0.83182 1.91562 1.95495 1.76908 1.46565 1.21003 1.01081 1.03325 0.96247 1.17201 0.83291 0.93574 0.90252 1.91616 1.55941 1.82590 1.79087 1.21793 1.00117 0.96026 0.83111 1.21971 1.01495 0.95757 0.97262 1.21317 1.00276 0.94798 0.94370 0.90928 1.20706 0.95928 0.94562 0.85684 1.42369 1.56810 1.37602 1.00831 1.19177 1.23109 1.10866 0.83868 0.91358 1.24725 1.00090 0.98357 0.97806 1.69641 1.35629 1.24329 1.28690 0.86277 0.77664 0.78029 0.84273 1.21315 1.21697 1.21308 0.92356 0.93590 0.91611 0.89909 0.90807 0.83173 0.83198 0.82716 0.89009 0.91035 0.91346 0.89294 0.96120 0.96536 0.78278 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.38 37.16 0.31 -1.48 16 2 C -0.10 -1.12 2.72 -90.50 -0.25 -1.37 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 4 C 0.11 1.00 4.96 -3.71 -0.02 0.98 16 5 N -0.59 -6.98 2.41 -173.98 -0.42 -7.40 16 6 C 0.56 7.35 6.88 -12.45 -0.09 7.26 16 7 O -0.53 -8.94 16.28 5.29 0.09 -8.85 16 8 C -0.17 -1.71 4.61 -104.91 -0.48 -2.19 16 9 C -0.03 -0.21 7.77 -39.21 -0.30 -0.51 16 10 C -0.17 -0.97 10.01 -39.57 -0.40 -1.37 16 11 C 0.15 1.06 7.30 -39.29 -0.29 0.77 16 12 F -0.13 -0.96 17.26 2.25 0.04 -0.92 16 13 C -0.20 -1.56 9.99 -39.50 -0.39 -1.95 16 14 C 0.18 1.83 7.27 -38.97 -0.28 1.55 16 15 F -0.11 -1.44 16.65 2.25 0.04 -1.41 16 16 C 0.11 1.45 6.44 -3.71 -0.02 1.42 16 17 C -0.13 -1.91 4.91 -26.61 -0.13 -2.04 16 18 C -0.09 -1.30 1.96 -90.57 -0.18 -1.48 16 19 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 20 C 0.16 3.04 5.19 -4.04 -0.02 3.02 16 21 N -0.73 -18.00 5.32 -59.90 -0.32 -18.32 16 22 C -0.24 -6.63 9.99 -15.05 -0.15 -6.78 16 23 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -27.98 13.06 55.49 0.72 -27.25 16 26 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 30 H 0.06 0.79 5.97 -51.93 -0.31 0.48 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.85 6.58 -51.93 -0.34 0.51 16 33 H 0.08 0.65 5.38 -51.93 -0.28 0.37 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.15 0.74 7.75 -52.49 -0.41 0.34 16 36 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 38 H 0.09 1.31 7.00 -51.93 -0.36 0.95 16 39 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 40 H 0.07 1.09 6.34 -51.93 -0.33 0.76 16 41 H 0.09 1.55 7.15 -51.93 -0.37 1.18 16 42 H 0.02 0.41 6.74 -51.93 -0.35 0.06 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.38 9.83 6.85 -40.82 -0.28 9.55 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 366.58 15.07 5.52 5.52 Total: -1.00 -32.77 366.58 -8.10 -40.87 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -5.96 Total: 5.08 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.79 Total: -4.66 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -0.01 Total: -52.97 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.85 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.08 Total: -2.33 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.77 -8.10 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185595073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.382 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds