Wall clock time and date at job start Tue Mar 31 2020 20:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.52649 * 2 1 4 4 C 1.53193 * 109.49655 * 120.07545 * 2 1 3 5 5 N 1.46926 * 108.77477 * 65.31999 * 4 2 1 6 6 C 1.34779 * 120.63111 * 233.63236 * 5 4 2 7 7 O 1.21585 * 119.99890 * 174.16511 * 6 5 4 8 8 C 1.47568 * 119.99699 * 354.15939 * 6 5 4 9 9 C 1.39736 * 120.14145 * 306.19425 * 8 6 5 10 10 C 1.37737 * 119.90268 * 180.02562 * 9 8 6 11 11 C 1.38762 * 120.19347 * 359.97438 * 10 9 8 12 12 F 1.35102 * 119.86110 * 180.02562 * 11 10 9 13 13 C 1.38502 * 120.28577 * 0.04399 * 11 10 9 14 14 C 1.38200 * 120.08726 * 359.67748 * 13 11 10 15 15 F 1.35106 * 120.09348 * 180.31521 * 14 13 11 16 16 C 1.46925 * 118.74071 * 53.60364 * 5 4 2 17 17 C 1.53194 * 108.78008 * 306.39455 * 16 5 4 18 18 C 1.53044 * 109.50164 * 239.91448 * 2 1 3 19 19 H 1.08999 * 109.46345 * 181.38956 * 18 2 1 20 20 C 1.53004 * 109.44419 * 61.42850 * 18 2 1 21 21 N 1.46500 * 109.46608 * 174.97081 * 20 18 2 22 22 C 1.36945 * 119.99534 * 180.02562 * 21 20 18 23 23 H 1.07996 * 120.00119 * 359.97438 * 22 21 20 24 24 C 1.38820 * 119.99640 * 179.97438 * 22 21 20 25 25 N 1.31615 * 119.99783 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99552 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46957 * 60.00429 * 26 24 22 28 28 H 1.48503 * 109.46791 * 180.02562 * 26 24 22 29 29 H 1.48491 * 109.47352 * 299.99905 * 26 24 22 30 30 H 1.09000 * 109.47038 * 180.08271 * 1 2 3 31 31 H 1.08998 * 109.47227 * 300.08609 * 1 2 3 32 32 H 1.09002 * 109.46852 * 60.08143 * 1 2 3 33 33 H 1.08992 * 109.58949 * 305.53265 * 4 2 1 34 34 H 1.08999 * 109.58884 * 185.09959 * 4 2 1 35 35 H 1.07992 * 120.04775 * 359.97438 * 9 8 6 36 36 H 1.07998 * 119.90517 * 180.02562 * 10 9 8 37 37 H 1.07996 * 119.95621 * 180.02562 * 13 11 10 38 38 H 1.08998 * 109.58899 * 186.60325 * 16 5 4 39 39 H 1.09008 * 109.58675 * 66.18389 * 16 5 4 40 40 H 1.09001 * 109.49515 * 294.68576 * 17 16 5 41 41 H 1.08993 * 109.52447 * 174.59988 * 17 16 5 42 42 H 1.09003 * 109.46804 * 294.96440 * 20 18 2 43 43 H 1.08999 * 109.47336 * 54.96643 * 20 18 2 44 44 H 0.96994 * 120.00670 * 359.97438 * 21 20 18 45 45 H 0.97007 * 119.99454 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7237 1.2497 5 7 1.6515 -2.1381 1.1697 6 6 0.9739 -2.7217 2.1781 7 8 0.5647 -3.8602 2.0567 8 6 0.7288 -1.9789 3.4294 9 6 1.7957 -1.4018 4.1232 10 6 1.5613 -0.7100 5.2910 11 6 0.2689 -0.5842 5.7802 12 9 0.0467 0.0963 6.9261 13 6 -0.7943 -1.1534 5.0991 14 6 -0.5732 -1.8451 3.9233 15 9 -1.6110 -2.3949 3.2555 16 6 2.0140 -2.9040 -0.0306 17 6 1.5030 -2.1559 -1.2659 18 6 2.0409 -0.7232 -1.2483 19 1 3.1306 -0.7444 -1.2353 20 6 1.5605 0.0170 -2.4982 21 7 2.1471 -0.6034 -3.6887 22 6 1.8588 -0.1069 -4.9320 23 1 1.1988 0.7417 -5.0349 24 6 2.4150 -0.6944 -6.0600 25 7 3.2190 -1.7289 -5.9346 26 14 2.0212 -0.0176 -7.7560 27 1 2.4581 1.3995 -7.8371 28 1 2.7346 -0.8157 -8.7853 29 1 0.5578 -0.0988 -7.9938 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3633 0.5152 0.8892 32 1 -0.3633 0.5126 -0.8907 33 1 1.6007 -0.2730 2.1389 34 1 3.1274 -0.6463 1.2981 35 1 2.8025 -1.4987 3.7448 36 1 2.3858 -0.2636 5.8271 37 1 -1.7980 -1.0518 5.4845 38 1 1.5554 -3.8918 0.0140 39 1 3.0980 -3.0043 -0.0865 40 1 0.4132 -2.1356 -1.2540 41 1 1.8476 -2.6628 -2.1672 42 1 0.4735 -0.0383 -2.5579 43 1 1.8687 1.0611 -2.4432 44 1 2.7402 -1.3653 -3.5963 45 1 3.6080 -2.1392 -6.7229 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185595073.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:17 Heat of formation + Delta-G solvation = -107.398752 kcal Electronic energy + Delta-G solvation = -29721.807114 eV Core-core repulsion = 25374.578564 eV Total energy + Delta-G solvation = -4347.228550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -50.18859 -50.09689 -41.75913 -39.82089 -38.93646 -36.60672 -34.76578 -33.29850 -32.73487 -31.93385 -31.33680 -28.53618 -27.78246 -25.78330 -25.02503 -24.34825 -23.60121 -22.97835 -21.37444 -19.84294 -19.32727 -19.11183 -18.52952 -18.15615 -17.42632 -17.05006 -16.84120 -16.76899 -16.44419 -16.26604 -15.89633 -15.69783 -15.48671 -15.45622 -15.30997 -15.02074 -14.79422 -14.50580 -14.09599 -13.91211 -13.70269 -13.59336 -13.47946 -13.02719 -12.97705 -12.77412 -12.75206 -12.57071 -12.44500 -12.23294 -12.05453 -11.91483 -11.57059 -11.38808 -11.25642 -11.05109 -10.87862 -10.20829 -9.92324 -9.67280 -8.96128 -7.94333 -5.21849 -0.47613 -0.11068 1.39969 1.46773 1.49491 1.55551 1.82495 2.26112 2.56516 2.68930 3.17255 3.26551 3.39125 3.49487 3.68534 3.78626 3.81649 3.84423 4.01126 4.06426 4.24315 4.29837 4.39771 4.44071 4.57376 4.62094 4.64065 4.66519 4.75168 4.77615 4.80605 4.88370 4.90371 4.95112 5.00013 5.06791 5.18124 5.19996 5.26455 5.29137 5.47693 5.53604 5.57606 5.60824 6.26825 6.28862 6.95061 7.35138 8.13094 8.35744 9.28970 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024396 B = 0.002414 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.445822 B =11595.173885 C =11827.672608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.107 0.893 4 C 0.107 3.893 5 N -0.590 5.590 6 C 0.559 3.441 7 O -0.578 6.578 8 C -0.182 4.182 9 C -0.020 4.020 10 C -0.146 4.146 11 C 0.149 3.851 12 F -0.127 7.127 13 C -0.193 4.193 14 C 0.151 3.849 15 F -0.138 7.138 16 C 0.119 3.881 17 C -0.118 4.118 18 C -0.078 4.078 19 H 0.077 0.923 20 C 0.158 3.842 21 N -0.743 5.743 22 C -0.245 4.245 23 H 0.072 0.928 24 C -0.075 4.075 25 N -0.968 5.968 26 Si 0.971 3.029 27 H -0.276 1.276 28 H -0.295 1.295 29 H -0.281 1.281 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.177 0.823 36 H 0.185 0.815 37 H 0.166 0.834 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.013 0.987 43 H 0.022 0.978 44 H 0.375 0.625 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.676 5.420 28.706 29.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.125 0.875 4 C -0.014 4.014 5 N -0.321 5.321 6 C 0.348 3.652 7 O -0.458 6.458 8 C -0.187 4.187 9 C -0.038 4.038 10 C -0.164 4.164 11 C 0.129 3.871 12 F -0.105 7.105 13 C -0.213 4.213 14 C 0.130 3.870 15 F -0.117 7.117 16 C -0.004 4.004 17 C -0.157 4.157 18 C -0.096 4.096 19 H 0.095 0.905 20 C 0.032 3.968 21 N -0.386 5.386 22 C -0.377 4.377 23 H 0.090 0.910 24 C -0.267 4.267 25 N -0.619 5.619 26 Si 0.800 3.200 27 H -0.202 1.202 28 H -0.221 1.221 29 H -0.208 1.208 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.195 0.805 36 H 0.202 0.798 37 H 0.183 0.817 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.031 0.969 43 H 0.040 0.960 44 H 0.207 0.793 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.018 4.959 28.523 29.021 hybrid contribution -0.678 -0.425 -1.527 1.724 sum -2.696 4.533 26.996 27.507 Atomic orbital electron populations 1.21853 0.95632 1.00848 1.01919 1.21471 0.95908 1.00525 0.93254 0.87493 1.22243 1.02022 0.78240 0.98932 1.48067 1.54601 1.12583 1.16890 1.18389 0.77323 0.85692 0.83816 1.90804 1.52100 1.20559 1.82344 1.19987 0.94025 1.06142 0.98500 1.21315 0.98818 0.91112 0.92600 1.21485 0.96104 1.01617 0.97235 1.17597 0.93775 0.92739 0.82962 1.91572 1.95560 1.76844 1.46574 1.21082 1.02209 1.02648 0.95334 1.17484 0.83004 0.95131 0.91348 1.91552 1.57028 1.83317 1.79788 1.21587 1.00814 0.95065 0.82891 1.21807 1.00366 0.96382 0.97125 1.21212 1.00369 0.94036 0.94021 0.90479 1.20867 0.95168 0.94989 0.85812 1.42582 1.56837 1.37552 1.01676 1.19579 1.22272 1.10531 0.85310 0.90999 1.25522 1.00671 0.99067 1.01446 1.69796 1.37089 1.25800 1.29216 0.85256 0.77428 0.77609 0.79744 1.20229 1.22143 1.20762 0.94621 0.91415 0.93044 0.87430 0.87759 0.80542 0.79765 0.81664 0.90884 0.89201 0.93041 0.92360 0.96912 0.95961 0.79269 0.94029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.38 71.98 0.60 -2.75 16 2 C -0.09 -1.87 2.72 -10.72 -0.03 -1.90 16 3 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 4 C 0.11 1.62 4.96 86.36 0.43 2.05 16 5 N -0.59 -13.09 2.41 -822.63 -1.98 -15.07 16 6 C 0.56 14.41 6.88 86.70 0.60 15.01 16 7 O -0.58 -20.44 16.28 -3.98 -0.06 -20.51 16 8 C -0.18 -3.39 4.61 -20.05 -0.09 -3.48 16 9 C -0.02 -0.20 7.77 22.51 0.17 -0.02 16 10 C -0.15 -1.01 10.01 22.28 0.22 -0.79 16 11 C 0.15 1.63 7.30 22.46 0.16 1.79 16 12 F -0.13 -1.50 17.26 44.97 0.78 -0.72 16 13 C -0.19 -2.71 9.99 22.32 0.22 -2.49 16 14 C 0.15 3.00 7.27 22.66 0.16 3.17 16 15 F -0.14 -3.66 16.65 44.97 0.75 -2.91 16 16 C 0.12 3.12 6.44 86.36 0.56 3.67 16 17 C -0.12 -3.69 4.91 30.67 0.15 -3.54 16 18 C -0.08 -2.22 1.96 -10.76 -0.02 -2.24 16 19 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 20 C 0.16 6.04 5.19 86.38 0.45 6.49 16 21 N -0.74 -37.19 5.32 -343.43 -1.83 -39.01 16 22 C -0.24 -13.70 9.99 84.03 0.84 -12.86 16 23 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 24 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 25 N -0.97 -59.15 13.06 21.65 0.28 -58.86 16 26 Si 0.97 46.29 29.55 68.60 2.03 48.32 16 27 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 28 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 29 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 30 H 0.03 0.98 5.97 -2.39 -0.01 0.97 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.32 6.58 -2.39 -0.02 1.30 16 33 H 0.11 1.18 5.38 -2.39 -0.01 1.17 16 34 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.18 0.79 7.75 -2.91 -0.02 0.77 16 36 H 0.19 0.09 8.06 -2.91 -0.02 0.07 16 37 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 38 H 0.07 2.21 7.00 -2.39 -0.02 2.20 16 39 H 0.09 2.04 8.14 -2.38 -0.02 2.03 16 40 H 0.05 1.75 6.34 -2.39 -0.02 1.74 16 41 H 0.06 2.16 7.15 -2.39 -0.02 2.15 16 42 H 0.01 0.52 6.74 -2.39 -0.02 0.50 16 43 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.37 19.79 6.85 -92.71 -0.63 19.16 16 45 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 Total: -1.00 -74.54 366.58 5.26 -69.28 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.40 Total: 21.20 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 4.90 Total: -1.72 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -3.52 Total: -112.95 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.06 Total: -20.51 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 1.53 Total: -3.63 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -74.54 5.26 -69.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185595073.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.114 kcal (2) G-P(sol) polarization free energy of solvation -74.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds