Wall clock time and date at job start Tue Mar 31 2020 20:43:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08996 * 109.52360 * 2 1
4 4 C 1.53195 * 109.50019 * 239.91293 * 2 1 3
5 5 N 1.46924 * 108.77740 * 294.68450 * 4 2 1
6 6 C 1.34778 * 120.62643 * 126.36466 * 5 4 2
7 7 O 1.21590 * 119.99497 * 175.88216 * 6 5 4
8 8 C 1.47569 * 120.00405 * 355.88235 * 6 5 4
9 9 C 1.39737 * 120.13571 * 54.25964 * 8 6 5
10 10 C 1.37736 * 119.90051 * 180.02562 * 9 8 6
11 11 C 1.38762 * 120.19279 * 0.02562 * 10 9 8
12 12 F 1.35102 * 119.85933 * 179.97438 * 11 10 9
13 13 C 1.38498 * 120.28283 * 0.02562 * 11 10 9
14 14 C 1.38195 * 120.09544 * 359.66538 * 13 11 10
15 15 F 1.35098 * 120.09853 * 180.32296 * 14 13 11
16 16 C 1.46923 * 118.74179 * 306.39138 * 5 4 2
17 17 C 1.53197 * 108.77242 * 53.60798 * 16 5 4
18 18 C 1.53039 * 109.31468 * 305.36428 * 17 16 5
19 19 H 1.09003 * 109.46079 * 301.36232 * 18 17 16
20 20 C 1.53000 * 109.46112 * 181.39015 * 18 17 16
21 21 N 1.46498 * 109.47312 * 65.00330 * 20 18 17
22 22 C 1.36933 * 119.99957 * 180.02562 * 21 20 18
23 23 H 1.07999 * 120.00194 * 359.97438 * 22 21 20
24 24 C 1.38814 * 119.99776 * 179.97438 * 22 21 20
25 25 N 1.31628 * 119.99640 * 179.97438 * 24 22 21
26 26 Si 1.86801 * 120.00156 * 359.97438 * 24 22 21
27 27 H 1.48497 * 109.47132 * 90.00241 * 26 24 22
28 28 H 1.48500 * 109.46992 * 210.00090 * 26 24 22
29 29 H 1.48493 * 109.47104 * 330.00192 * 26 24 22
30 30 H 1.08996 * 109.47808 * 299.92113 * 1 2 3
31 31 H 1.09005 * 109.47210 * 59.92504 * 1 2 3
32 32 H 1.09000 * 109.47154 * 179.97438 * 1 2 3
33 33 H 1.08999 * 109.58234 * 174.89552 * 4 2 1
34 34 H 1.08995 * 109.69922 * 54.54190 * 4 2 1
35 35 H 1.07991 * 120.05385 * 0.02648 * 9 8 6
36 36 H 1.08001 * 119.90715 * 180.02562 * 10 9 8
37 37 H 1.08004 * 119.95180 * 179.97438 * 13 11 10
38 38 H 1.09000 * 109.58791 * 293.82493 * 16 5 4
39 39 H 1.08996 * 109.59018 * 173.39300 * 16 5 4
40 40 H 1.09011 * 109.49455 * 185.41772 * 17 16 5
41 41 H 1.08997 * 109.52711 * 65.33541 * 17 16 5
42 42 H 1.08998 * 109.47074 * 304.99635 * 20 18 17
43 43 H 1.09008 * 109.46712 * 185.00054 * 20 18 17
44 44 H 0.97004 * 120.00100 * 359.97438 * 21 20 18
45 45 H 0.97001 * 119.99474 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8942 1.0273 0.0000
4 6 2.0413 -0.7239 -1.2495
5 7 1.6516 -2.1383 -1.1694
6 6 0.9740 -2.7219 -2.1778
7 8 0.7226 -3.9107 -2.1332
8 6 0.5373 -1.9183 -3.3358
9 6 1.4652 -1.1573 -4.0517
10 6 1.0522 -0.4086 -5.1314
11 6 -0.2828 -0.4073 -5.5101
12 9 -0.6806 0.3300 -6.5700
13 6 -1.2093 -1.1578 -4.8055
14 6 -0.8067 -1.9184 -3.7241
15 9 -1.7093 -2.6556 -3.0408
16 6 2.0140 -2.9041 0.0309
17 6 1.5029 -2.1557 1.2661
18 6 2.0407 -0.7231 1.2485
19 1 3.1304 -0.7444 1.2352
20 6 1.5605 0.0171 2.4985
21 7 2.1479 -0.6027 3.6888
22 6 1.8591 -0.1068 4.9321
23 1 1.1987 0.7415 5.0352
24 6 2.4152 -0.6945 6.0601
25 7 2.1380 -0.2175 7.2552
26 14 3.5569 -2.1622 5.8820
27 1 4.9569 -1.6865 5.7442
28 1 3.4438 -3.0261 7.0845
29 1 3.1778 -2.9407 4.6757
30 1 -0.3634 0.5126 0.8906
31 1 -0.3634 0.5150 -0.8893
32 1 -0.3633 -1.0277 -0.0005
33 1 3.1275 -0.6463 -1.2978
34 1 1.6028 -0.2739 -2.1401
35 1 2.5047 -1.1562 -3.7588
36 1 1.7694 0.1793 -5.6850
37 1 -2.2470 -1.1526 -5.1046
38 1 3.0979 -3.0043 0.0870
39 1 1.5554 -3.8919 -0.0135
40 1 1.8480 -2.6627 2.1673
41 1 0.4131 -2.1354 1.2547
42 1 0.4736 -0.0385 2.5586
43 1 1.8684 1.0613 2.4431
44 1 2.7407 -1.3649 3.5964
45 1 2.5264 -0.6284 8.0434
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001185595074.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:43:21
Heat of formation + Delta-G solvation = -82.216565 kcal
Electronic energy + Delta-G solvation = -29880.891388 eV
Core-core repulsion = 25534.754820 eV
Total energy + Delta-G solvation = -4346.136568 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.155 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-49.57064 -49.41218 -40.93575 -39.05434 -38.04452 -35.22388 -33.34666 -32.46736
-31.53577 -31.20736 -30.44745 -27.42154 -26.93587 -24.67645 -23.82272 -23.36291
-22.74320 -21.45035 -20.50773 -18.95271 -18.53372 -18.07878 -17.70385 -17.20020
-16.63962 -16.29754 -16.21859 -15.76856 -15.46758 -15.16720 -15.01614 -14.83765
-14.46773 -14.39090 -14.18831 -13.95300 -13.66157 -13.34135 -12.96059 -12.92319
-12.83266 -12.54140 -12.41809 -12.23812 -12.03189 -11.82105 -11.57026 -11.40328
-11.13073 -10.85439 -10.51841 -10.40815 -10.22974 -10.15147 -10.06965 -9.64220
-9.57986 -9.29548 -8.90089 -8.78714 -7.23426 -5.77915 -3.13227 0.12438
0.40878 2.23148 2.58088 2.90579 3.26159 3.35341 3.37541 3.44148
3.76958 3.93035 4.01342 4.25561 4.49840 4.55637 4.57649 4.72743
4.79489 5.02462 5.07975 5.12774 5.15876 5.24010 5.28372 5.36916
5.40442 5.42832 5.46158 5.51968 5.56862 5.66289 5.70614 5.80048
5.91143 6.06632 6.08550 6.11034 6.15633 6.24531 6.35928 6.50907
6.65247 6.79047 7.10801 7.83393 7.98509 8.41253 9.20414 9.92737
10.12466 11.40656
Molecular weight = 338.15amu
Principal moments of inertia in cm(-1)
A = 0.022470 B = 0.002653 C = 0.002567
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1245.800205 B =10551.988850 C =10903.077688
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.098 4.098
3 H 0.086 0.914
4 C 0.101 3.899
5 N -0.595 5.595
6 C 0.562 3.438
7 O -0.526 6.526
8 C -0.168 4.168
9 C -0.033 4.033
10 C -0.167 4.167
11 C 0.149 3.851
12 F -0.126 7.126
13 C -0.196 4.196
14 C 0.179 3.821
15 F -0.114 7.114
16 C 0.111 3.889
17 C -0.130 4.130
18 C -0.093 4.093
19 H 0.072 0.928
20 C 0.163 3.837
21 N -0.755 5.755
22 C -0.243 4.243
23 H 0.089 0.911
24 C 0.003 3.997
25 N -0.935 5.935
26 Si 0.885 3.115
27 H -0.285 1.285
28 H -0.291 1.291
29 H -0.277 1.277
30 H 0.067 0.933
31 H 0.047 0.953
32 H 0.057 0.943
33 H 0.075 0.925
34 H 0.088 0.912
35 H 0.151 0.849
36 H 0.151 0.849
37 H 0.156 0.844
38 H 0.070 0.930
39 H 0.092 0.908
40 H 0.083 0.917
41 H 0.072 0.928
42 H 0.029 0.971
43 H 0.026 0.974
44 H 0.360 0.640
45 H 0.259 0.741
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.737 0.277 -29.179 29.232
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.117 4.117
3 H 0.104 0.896
4 C -0.021 4.021
5 N -0.327 5.327
6 C 0.349 3.651
7 O -0.403 6.403
8 C -0.173 4.173
9 C -0.052 4.052
10 C -0.186 4.186
11 C 0.130 3.870
12 F -0.105 7.105
13 C -0.216 4.216
14 C 0.158 3.842
15 F -0.092 7.092
16 C -0.010 4.010
17 C -0.168 4.168
18 C -0.112 4.112
19 H 0.091 0.909
20 C 0.036 3.964
21 N -0.401 5.401
22 C -0.373 4.373
23 H 0.107 0.893
24 C -0.192 4.192
25 N -0.583 5.583
26 Si 0.715 3.285
27 H -0.211 1.211
28 H -0.218 1.218
29 H -0.203 1.203
30 H 0.086 0.914
31 H 0.066 0.934
32 H 0.076 0.924
33 H 0.093 0.907
34 H 0.106 0.894
35 H 0.169 0.831
36 H 0.168 0.832
37 H 0.173 0.827
38 H 0.089 0.911
39 H 0.110 0.890
40 H 0.101 0.899
41 H 0.091 0.909
42 H 0.047 0.953
43 H 0.044 0.956
44 H 0.193 0.807
45 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -2.019 -0.229 -28.958 29.029
hybrid contribution 0.558 -0.918 0.017 1.074
sum -1.460 -1.147 -28.941 29.000
Atomic orbital electron populations
1.21905 0.94739 1.02203 1.01809 1.21456 0.96776 0.99586 0.93900
0.89554 1.22128 1.00116 0.80297 0.99572 1.48005 1.55094 1.11749
1.17864 1.17901 0.78204 0.86891 0.82125 1.90838 1.55865 1.14748
1.78854 1.20055 0.93211 1.03508 1.00497 1.21051 0.99742 0.91808
0.92556 1.21149 0.94568 1.03307 0.99580 1.17470 0.92570 0.91703
0.85303 1.91566 1.91366 1.74254 1.53285 1.21008 1.02041 1.01054
0.97498 1.17169 0.85445 0.90960 0.90587 1.91614 1.65860 1.73887
1.77861 1.21765 1.00182 0.96016 0.83047 1.22014 1.01901 0.95812
0.97079 1.21377 1.00273 0.94791 0.94783 0.90948 1.20689 0.96313
0.94815 0.84602 1.42729 1.57487 1.37285 1.02619 1.19053 1.24181
1.12127 0.81933 0.89304 1.24682 1.00319 0.99121 0.95122 1.69707
1.48321 1.43204 0.97055 0.86546 0.81458 0.83584 0.76896 1.21127
1.21755 1.20326 0.91448 0.93409 0.92439 0.90704 0.89421 0.83143
0.83155 0.82658 0.91139 0.88959 0.89880 0.90927 0.95296 0.95583
0.80708 0.93070
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.67 8.38 37.15 0.31 -1.36 16
2 C -0.10 -1.02 2.72 -90.50 -0.25 -1.26 16
3 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16
4 C 0.10 0.86 4.93 -3.71 -0.02 0.84 16
5 N -0.59 -6.54 2.41 -173.99 -0.42 -6.96 16
6 C 0.56 7.02 6.91 -12.45 -0.09 6.93 16
7 O -0.53 -8.60 16.28 5.29 0.09 -8.51 16
8 C -0.17 -1.64 4.89 -104.91 -0.51 -2.15 16
9 C -0.03 -0.21 7.42 -39.21 -0.29 -0.50 16
10 C -0.17 -0.91 10.01 -39.57 -0.40 -1.31 16
11 C 0.15 1.02 7.30 -39.29 -0.29 0.74 16
12 F -0.13 -0.93 17.26 2.25 0.04 -0.89 16
13 C -0.20 -1.50 9.99 -39.50 -0.39 -1.89 16
14 C 0.18 1.79 7.27 -38.98 -0.28 1.50 16
15 F -0.11 -1.41 16.65 2.25 0.04 -1.37 16
16 C 0.11 1.35 6.42 -3.71 -0.02 1.33 16
17 C -0.13 -1.80 4.90 -26.61 -0.13 -1.93 16
18 C -0.09 -1.26 1.96 -90.58 -0.18 -1.44 16
19 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16
20 C 0.16 2.94 5.18 -4.04 -0.02 2.92 16
21 N -0.76 -17.34 5.12 -59.91 -0.31 -17.65 16
22 C -0.24 -6.80 10.47 -15.06 -0.16 -6.96 16
23 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16
24 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16
25 N -0.93 -29.32 13.97 55.49 0.78 -28.55 16
26 Si 0.88 21.87 27.74 -169.99 -4.71 17.16 16
27 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16
28 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16
29 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16
30 H 0.07 0.82 6.58 -51.93 -0.34 0.48 16
31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16
32 H 0.06 0.72 5.97 -51.93 -0.31 0.41 16
33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16
34 H 0.09 0.60 4.73 -51.93 -0.25 0.35 16
35 H 0.15 0.65 7.37 -52.49 -0.39 0.26 16
36 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16
37 H 0.16 0.93 8.06 -52.48 -0.42 0.50 16
38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
39 H 0.09 1.23 7.03 -51.93 -0.36 0.87 16
40 H 0.08 1.31 7.15 -51.92 -0.37 0.93 16
41 H 0.07 1.07 6.34 -51.93 -0.33 0.74 16
42 H 0.03 0.55 6.74 -51.93 -0.35 0.20 16
43 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16
44 H 0.36 8.02 4.71 -40.82 -0.19 7.83 16
45 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16
LS Contribution 362.38 15.07 5.46 5.46
Total: -1.00 -33.87 362.38 -7.72 -41.59
By element:
Atomic # 1 Polarization: 10.12 SS G_CDS: -5.87 Total: 4.25 kcal
Atomic # 6 Polarization: -1.73 SS G_CDS: -2.81 Total: -4.54 kcal
Atomic # 7 Polarization: -53.21 SS G_CDS: 0.05 Total: -53.16 kcal
Atomic # 8 Polarization: -8.60 SS G_CDS: 0.09 Total: -8.51 kcal
Atomic # 9 Polarization: -2.33 SS G_CDS: 0.08 Total: -2.25 kcal
Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal
Total LS contribution 5.46 Total: 5.46 kcal
Total: -33.87 -7.72 -41.59 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001185595074.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.625 kcal
(2) G-P(sol) polarization free energy of solvation -33.874 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.499 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.217 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds