Wall clock time and date at job start Tue Mar 31 2020 20:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.52360 * 2 1 4 4 C 1.53195 * 109.50019 * 239.91293 * 2 1 3 5 5 N 1.46924 * 108.77740 * 294.68450 * 4 2 1 6 6 C 1.34778 * 120.62643 * 126.36466 * 5 4 2 7 7 O 1.21590 * 119.99497 * 175.88216 * 6 5 4 8 8 C 1.47569 * 120.00405 * 355.88235 * 6 5 4 9 9 C 1.39737 * 120.13571 * 54.25964 * 8 6 5 10 10 C 1.37736 * 119.90051 * 180.02562 * 9 8 6 11 11 C 1.38762 * 120.19279 * 0.02562 * 10 9 8 12 12 F 1.35102 * 119.85933 * 179.97438 * 11 10 9 13 13 C 1.38498 * 120.28283 * 0.02562 * 11 10 9 14 14 C 1.38195 * 120.09544 * 359.66538 * 13 11 10 15 15 F 1.35098 * 120.09853 * 180.32296 * 14 13 11 16 16 C 1.46923 * 118.74179 * 306.39138 * 5 4 2 17 17 C 1.53197 * 108.77242 * 53.60798 * 16 5 4 18 18 C 1.53039 * 109.31468 * 305.36428 * 17 16 5 19 19 H 1.09003 * 109.46079 * 301.36232 * 18 17 16 20 20 C 1.53000 * 109.46112 * 181.39015 * 18 17 16 21 21 N 1.46498 * 109.47312 * 65.00330 * 20 18 17 22 22 C 1.36933 * 119.99957 * 180.02562 * 21 20 18 23 23 H 1.07999 * 120.00194 * 359.97438 * 22 21 20 24 24 C 1.38814 * 119.99776 * 179.97438 * 22 21 20 25 25 N 1.31628 * 119.99640 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00156 * 359.97438 * 24 22 21 27 27 H 1.48497 * 109.47132 * 90.00241 * 26 24 22 28 28 H 1.48500 * 109.46992 * 210.00090 * 26 24 22 29 29 H 1.48493 * 109.47104 * 330.00192 * 26 24 22 30 30 H 1.08996 * 109.47808 * 299.92113 * 1 2 3 31 31 H 1.09005 * 109.47210 * 59.92504 * 1 2 3 32 32 H 1.09000 * 109.47154 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.58234 * 174.89552 * 4 2 1 34 34 H 1.08995 * 109.69922 * 54.54190 * 4 2 1 35 35 H 1.07991 * 120.05385 * 0.02648 * 9 8 6 36 36 H 1.08001 * 119.90715 * 180.02562 * 10 9 8 37 37 H 1.08004 * 119.95180 * 179.97438 * 13 11 10 38 38 H 1.09000 * 109.58791 * 293.82493 * 16 5 4 39 39 H 1.08996 * 109.59018 * 173.39300 * 16 5 4 40 40 H 1.09011 * 109.49455 * 185.41772 * 17 16 5 41 41 H 1.08997 * 109.52711 * 65.33541 * 17 16 5 42 42 H 1.08998 * 109.47074 * 304.99635 * 20 18 17 43 43 H 1.09008 * 109.46712 * 185.00054 * 20 18 17 44 44 H 0.97004 * 120.00100 * 359.97438 * 21 20 18 45 45 H 0.97001 * 119.99474 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2495 5 7 1.6516 -2.1383 -1.1694 6 6 0.9740 -2.7219 -2.1778 7 8 0.7226 -3.9107 -2.1332 8 6 0.5373 -1.9183 -3.3358 9 6 1.4652 -1.1573 -4.0517 10 6 1.0522 -0.4086 -5.1314 11 6 -0.2828 -0.4073 -5.5101 12 9 -0.6806 0.3300 -6.5700 13 6 -1.2093 -1.1578 -4.8055 14 6 -0.8067 -1.9184 -3.7241 15 9 -1.7093 -2.6556 -3.0408 16 6 2.0140 -2.9041 0.0309 17 6 1.5029 -2.1557 1.2661 18 6 2.0407 -0.7231 1.2485 19 1 3.1304 -0.7444 1.2352 20 6 1.5605 0.0171 2.4985 21 7 2.1479 -0.6027 3.6888 22 6 1.8591 -0.1068 4.9321 23 1 1.1987 0.7415 5.0352 24 6 2.4152 -0.6945 6.0601 25 7 2.1380 -0.2175 7.2552 26 14 3.5569 -2.1622 5.8820 27 1 4.9569 -1.6865 5.7442 28 1 3.4438 -3.0261 7.0845 29 1 3.1778 -2.9407 4.6757 30 1 -0.3634 0.5126 0.8906 31 1 -0.3634 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1275 -0.6463 -1.2978 34 1 1.6028 -0.2739 -2.1401 35 1 2.5047 -1.1562 -3.7588 36 1 1.7694 0.1793 -5.6850 37 1 -2.2470 -1.1526 -5.1046 38 1 3.0979 -3.0043 0.0870 39 1 1.5554 -3.8919 -0.0135 40 1 1.8480 -2.6627 2.1673 41 1 0.4131 -2.1354 1.2547 42 1 0.4736 -0.0385 2.5586 43 1 1.8684 1.0613 2.4431 44 1 2.7407 -1.3649 3.5964 45 1 2.5264 -0.6284 8.0434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185595074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:21 Heat of formation + Delta-G solvation = -82.216565 kcal Electronic energy + Delta-G solvation = -29880.891388 eV Core-core repulsion = 25534.754820 eV Total energy + Delta-G solvation = -4346.136568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.57064 -49.41218 -40.93575 -39.05434 -38.04452 -35.22388 -33.34666 -32.46736 -31.53577 -31.20736 -30.44745 -27.42154 -26.93587 -24.67645 -23.82272 -23.36291 -22.74320 -21.45035 -20.50773 -18.95271 -18.53372 -18.07878 -17.70385 -17.20020 -16.63962 -16.29754 -16.21859 -15.76856 -15.46758 -15.16720 -15.01614 -14.83765 -14.46773 -14.39090 -14.18831 -13.95300 -13.66157 -13.34135 -12.96059 -12.92319 -12.83266 -12.54140 -12.41809 -12.23812 -12.03189 -11.82105 -11.57026 -11.40328 -11.13073 -10.85439 -10.51841 -10.40815 -10.22974 -10.15147 -10.06965 -9.64220 -9.57986 -9.29548 -8.90089 -8.78714 -7.23426 -5.77915 -3.13227 0.12438 0.40878 2.23148 2.58088 2.90579 3.26159 3.35341 3.37541 3.44148 3.76958 3.93035 4.01342 4.25561 4.49840 4.55637 4.57649 4.72743 4.79489 5.02462 5.07975 5.12774 5.15876 5.24010 5.28372 5.36916 5.40442 5.42832 5.46158 5.51968 5.56862 5.66289 5.70614 5.80048 5.91143 6.06632 6.08550 6.11034 6.15633 6.24531 6.35928 6.50907 6.65247 6.79047 7.10801 7.83393 7.98509 8.41253 9.20414 9.92737 10.12466 11.40656 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022470 B = 0.002653 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.800205 B =10551.988850 C =10903.077688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.098 4.098 3 H 0.086 0.914 4 C 0.101 3.899 5 N -0.595 5.595 6 C 0.562 3.438 7 O -0.526 6.526 8 C -0.168 4.168 9 C -0.033 4.033 10 C -0.167 4.167 11 C 0.149 3.851 12 F -0.126 7.126 13 C -0.196 4.196 14 C 0.179 3.821 15 F -0.114 7.114 16 C 0.111 3.889 17 C -0.130 4.130 18 C -0.093 4.093 19 H 0.072 0.928 20 C 0.163 3.837 21 N -0.755 5.755 22 C -0.243 4.243 23 H 0.089 0.911 24 C 0.003 3.997 25 N -0.935 5.935 26 Si 0.885 3.115 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.029 0.971 43 H 0.026 0.974 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.737 0.277 -29.179 29.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.117 4.117 3 H 0.104 0.896 4 C -0.021 4.021 5 N -0.327 5.327 6 C 0.349 3.651 7 O -0.403 6.403 8 C -0.173 4.173 9 C -0.052 4.052 10 C -0.186 4.186 11 C 0.130 3.870 12 F -0.105 7.105 13 C -0.216 4.216 14 C 0.158 3.842 15 F -0.092 7.092 16 C -0.010 4.010 17 C -0.168 4.168 18 C -0.112 4.112 19 H 0.091 0.909 20 C 0.036 3.964 21 N -0.401 5.401 22 C -0.373 4.373 23 H 0.107 0.893 24 C -0.192 4.192 25 N -0.583 5.583 26 Si 0.715 3.285 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.173 0.827 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.044 0.956 44 H 0.193 0.807 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.019 -0.229 -28.958 29.029 hybrid contribution 0.558 -0.918 0.017 1.074 sum -1.460 -1.147 -28.941 29.000 Atomic orbital electron populations 1.21905 0.94739 1.02203 1.01809 1.21456 0.96776 0.99586 0.93900 0.89554 1.22128 1.00116 0.80297 0.99572 1.48005 1.55094 1.11749 1.17864 1.17901 0.78204 0.86891 0.82125 1.90838 1.55865 1.14748 1.78854 1.20055 0.93211 1.03508 1.00497 1.21051 0.99742 0.91808 0.92556 1.21149 0.94568 1.03307 0.99580 1.17470 0.92570 0.91703 0.85303 1.91566 1.91366 1.74254 1.53285 1.21008 1.02041 1.01054 0.97498 1.17169 0.85445 0.90960 0.90587 1.91614 1.65860 1.73887 1.77861 1.21765 1.00182 0.96016 0.83047 1.22014 1.01901 0.95812 0.97079 1.21377 1.00273 0.94791 0.94783 0.90948 1.20689 0.96313 0.94815 0.84602 1.42729 1.57487 1.37285 1.02619 1.19053 1.24181 1.12127 0.81933 0.89304 1.24682 1.00319 0.99121 0.95122 1.69707 1.48321 1.43204 0.97055 0.86546 0.81458 0.83584 0.76896 1.21127 1.21755 1.20326 0.91448 0.93409 0.92439 0.90704 0.89421 0.83143 0.83155 0.82658 0.91139 0.88959 0.89880 0.90927 0.95296 0.95583 0.80708 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.38 37.15 0.31 -1.36 16 2 C -0.10 -1.02 2.72 -90.50 -0.25 -1.26 16 3 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 4 C 0.10 0.86 4.93 -3.71 -0.02 0.84 16 5 N -0.59 -6.54 2.41 -173.99 -0.42 -6.96 16 6 C 0.56 7.02 6.91 -12.45 -0.09 6.93 16 7 O -0.53 -8.60 16.28 5.29 0.09 -8.51 16 8 C -0.17 -1.64 4.89 -104.91 -0.51 -2.15 16 9 C -0.03 -0.21 7.42 -39.21 -0.29 -0.50 16 10 C -0.17 -0.91 10.01 -39.57 -0.40 -1.31 16 11 C 0.15 1.02 7.30 -39.29 -0.29 0.74 16 12 F -0.13 -0.93 17.26 2.25 0.04 -0.89 16 13 C -0.20 -1.50 9.99 -39.50 -0.39 -1.89 16 14 C 0.18 1.79 7.27 -38.98 -0.28 1.50 16 15 F -0.11 -1.41 16.65 2.25 0.04 -1.37 16 16 C 0.11 1.35 6.42 -3.71 -0.02 1.33 16 17 C -0.13 -1.80 4.90 -26.61 -0.13 -1.93 16 18 C -0.09 -1.26 1.96 -90.58 -0.18 -1.44 16 19 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 20 C 0.16 2.94 5.18 -4.04 -0.02 2.92 16 21 N -0.76 -17.34 5.12 -59.91 -0.31 -17.65 16 22 C -0.24 -6.80 10.47 -15.06 -0.16 -6.96 16 23 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 24 C 0.00 0.09 5.50 -17.43 -0.10 0.00 16 25 N -0.93 -29.32 13.97 55.49 0.78 -28.55 16 26 Si 0.88 21.87 27.74 -169.99 -4.71 17.16 16 27 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 29 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 30 H 0.07 0.82 6.58 -51.93 -0.34 0.48 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.72 5.97 -51.93 -0.31 0.41 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.60 4.73 -51.93 -0.25 0.35 16 35 H 0.15 0.65 7.37 -52.49 -0.39 0.26 16 36 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 37 H 0.16 0.93 8.06 -52.48 -0.42 0.50 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.23 7.03 -51.93 -0.36 0.87 16 40 H 0.08 1.31 7.15 -51.92 -0.37 0.93 16 41 H 0.07 1.07 6.34 -51.93 -0.33 0.74 16 42 H 0.03 0.55 6.74 -51.93 -0.35 0.20 16 43 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 44 H 0.36 8.02 4.71 -40.82 -0.19 7.83 16 45 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 362.38 15.07 5.46 5.46 Total: -1.00 -33.87 362.38 -7.72 -41.59 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -5.87 Total: 4.25 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: -2.81 Total: -4.54 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.05 Total: -53.16 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: 0.09 Total: -8.51 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.08 Total: -2.25 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.16 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.87 -7.72 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185595074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.625 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds