Wall clock time and date at job start Tue Mar 31 2020 20:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.52360 * 2 1 4 4 C 1.53195 * 109.50019 * 239.91293 * 2 1 3 5 5 N 1.46924 * 108.77740 * 294.68450 * 4 2 1 6 6 C 1.34778 * 120.62643 * 126.36466 * 5 4 2 7 7 O 1.21590 * 119.99497 * 175.88216 * 6 5 4 8 8 C 1.47569 * 120.00405 * 355.88235 * 6 5 4 9 9 C 1.39737 * 120.13571 * 54.25964 * 8 6 5 10 10 C 1.37736 * 119.90051 * 180.02562 * 9 8 6 11 11 C 1.38762 * 120.19279 * 0.02562 * 10 9 8 12 12 F 1.35102 * 119.85933 * 179.97438 * 11 10 9 13 13 C 1.38498 * 120.28283 * 0.02562 * 11 10 9 14 14 C 1.38195 * 120.09544 * 359.66538 * 13 11 10 15 15 F 1.35098 * 120.09853 * 180.32296 * 14 13 11 16 16 C 1.46923 * 118.74179 * 306.39138 * 5 4 2 17 17 C 1.53197 * 108.77242 * 53.60798 * 16 5 4 18 18 C 1.53039 * 109.31468 * 305.36428 * 17 16 5 19 19 H 1.09003 * 109.46079 * 301.36232 * 18 17 16 20 20 C 1.53000 * 109.46112 * 181.39015 * 18 17 16 21 21 N 1.46498 * 109.47312 * 65.00330 * 20 18 17 22 22 C 1.36933 * 119.99957 * 180.02562 * 21 20 18 23 23 H 1.07999 * 120.00194 * 359.97438 * 22 21 20 24 24 C 1.38814 * 119.99776 * 179.97438 * 22 21 20 25 25 N 1.31628 * 119.99640 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 120.00156 * 359.97438 * 24 22 21 27 27 H 1.48497 * 109.47132 * 90.00241 * 26 24 22 28 28 H 1.48500 * 109.46992 * 210.00090 * 26 24 22 29 29 H 1.48493 * 109.47104 * 330.00192 * 26 24 22 30 30 H 1.08996 * 109.47808 * 299.92113 * 1 2 3 31 31 H 1.09005 * 109.47210 * 59.92504 * 1 2 3 32 32 H 1.09000 * 109.47154 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.58234 * 174.89552 * 4 2 1 34 34 H 1.08995 * 109.69922 * 54.54190 * 4 2 1 35 35 H 1.07991 * 120.05385 * 0.02648 * 9 8 6 36 36 H 1.08001 * 119.90715 * 180.02562 * 10 9 8 37 37 H 1.08004 * 119.95180 * 179.97438 * 13 11 10 38 38 H 1.09000 * 109.58791 * 293.82493 * 16 5 4 39 39 H 1.08996 * 109.59018 * 173.39300 * 16 5 4 40 40 H 1.09011 * 109.49455 * 185.41772 * 17 16 5 41 41 H 1.08997 * 109.52711 * 65.33541 * 17 16 5 42 42 H 1.08998 * 109.47074 * 304.99635 * 20 18 17 43 43 H 1.09008 * 109.46712 * 185.00054 * 20 18 17 44 44 H 0.97004 * 120.00100 * 359.97438 * 21 20 18 45 45 H 0.97001 * 119.99474 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2495 5 7 1.6516 -2.1383 -1.1694 6 6 0.9740 -2.7219 -2.1778 7 8 0.7226 -3.9107 -2.1332 8 6 0.5373 -1.9183 -3.3358 9 6 1.4652 -1.1573 -4.0517 10 6 1.0522 -0.4086 -5.1314 11 6 -0.2828 -0.4073 -5.5101 12 9 -0.6806 0.3300 -6.5700 13 6 -1.2093 -1.1578 -4.8055 14 6 -0.8067 -1.9184 -3.7241 15 9 -1.7093 -2.6556 -3.0408 16 6 2.0140 -2.9041 0.0309 17 6 1.5029 -2.1557 1.2661 18 6 2.0407 -0.7231 1.2485 19 1 3.1304 -0.7444 1.2352 20 6 1.5605 0.0171 2.4985 21 7 2.1479 -0.6027 3.6888 22 6 1.8591 -0.1068 4.9321 23 1 1.1987 0.7415 5.0352 24 6 2.4152 -0.6945 6.0601 25 7 2.1380 -0.2175 7.2552 26 14 3.5569 -2.1622 5.8820 27 1 4.9569 -1.6865 5.7442 28 1 3.4438 -3.0261 7.0845 29 1 3.1778 -2.9407 4.6757 30 1 -0.3634 0.5126 0.8906 31 1 -0.3634 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1275 -0.6463 -1.2978 34 1 1.6028 -0.2739 -2.1401 35 1 2.5047 -1.1562 -3.7588 36 1 1.7694 0.1793 -5.6850 37 1 -2.2470 -1.1526 -5.1046 38 1 3.0979 -3.0043 0.0870 39 1 1.5554 -3.8919 -0.0135 40 1 1.8480 -2.6627 2.1673 41 1 0.4131 -2.1354 1.2547 42 1 0.4736 -0.0385 2.5586 43 1 1.8684 1.0613 2.4431 44 1 2.7407 -1.3649 3.5964 45 1 2.5264 -0.6284 8.0434 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185595074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:20 Heat of formation + Delta-G solvation = -103.003775 kcal Electronic energy + Delta-G solvation = -29881.792789 eV Core-core repulsion = 25534.754820 eV Total energy + Delta-G solvation = -4347.037969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -50.20082 -50.10261 -41.79988 -39.83661 -38.97547 -36.75103 -34.77796 -33.39323 -33.03434 -31.96377 -31.43861 -28.79720 -27.82555 -25.72782 -24.83556 -24.39955 -23.60230 -22.91464 -21.43392 -20.08937 -19.50844 -19.17649 -18.58746 -18.20765 -17.43783 -17.06173 -16.85609 -16.73170 -16.46465 -16.30848 -16.04087 -15.74814 -15.57001 -15.43159 -15.20158 -15.05233 -14.78123 -14.68995 -14.11820 -14.01925 -13.75236 -13.64286 -13.48777 -13.26693 -13.07013 -12.84307 -12.74820 -12.57437 -12.46027 -12.18405 -12.08099 -11.86213 -11.58261 -11.44365 -11.28932 -11.05784 -10.93378 -10.19021 -9.93916 -9.67782 -9.26974 -8.02682 -5.35491 -0.47906 -0.12400 1.37128 1.38297 1.41426 1.48658 1.81836 2.25378 2.48580 2.68387 3.15996 3.25818 3.28925 3.48432 3.55827 3.72980 3.78768 3.81673 3.98476 4.00862 4.09438 4.26523 4.37800 4.40085 4.56705 4.61308 4.62102 4.65376 4.73197 4.75492 4.78898 4.86662 4.88487 4.93731 4.97820 5.03991 5.15083 5.17240 5.25220 5.27453 5.47786 5.56503 5.58472 5.76419 6.21662 6.25173 6.94028 7.09143 7.85993 8.04986 9.19170 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022470 B = 0.002653 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.800205 B =10551.988850 C =10903.077688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.108 0.892 4 C 0.101 3.899 5 N -0.590 5.590 6 C 0.559 3.441 7 O -0.577 6.577 8 C -0.182 4.182 9 C -0.023 4.023 10 C -0.146 4.146 11 C 0.148 3.852 12 F -0.128 7.128 13 C -0.194 4.194 14 C 0.150 3.850 15 F -0.139 7.139 16 C 0.117 3.883 17 C -0.125 4.125 18 C -0.083 4.083 19 H 0.087 0.913 20 C 0.160 3.840 21 N -0.757 5.757 22 C -0.233 4.233 23 H 0.053 0.947 24 C -0.067 4.067 25 N -0.986 5.986 26 Si 0.956 3.044 27 H -0.274 1.274 28 H -0.299 1.299 29 H -0.249 1.249 30 H 0.049 0.951 31 H 0.067 0.933 32 H 0.036 0.964 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.181 0.819 36 H 0.186 0.814 37 H 0.165 0.835 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.017 0.983 43 H 0.028 0.972 44 H 0.366 0.634 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.743 1.010 -32.693 32.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.126 0.874 4 C -0.020 4.020 5 N -0.321 5.321 6 C 0.348 3.652 7 O -0.457 6.457 8 C -0.187 4.187 9 C -0.041 4.041 10 C -0.164 4.164 11 C 0.128 3.872 12 F -0.106 7.106 13 C -0.214 4.214 14 C 0.130 3.870 15 F -0.117 7.117 16 C -0.005 4.005 17 C -0.164 4.164 18 C -0.101 4.101 19 H 0.105 0.895 20 C 0.034 3.966 21 N -0.403 5.403 22 C -0.364 4.364 23 H 0.071 0.929 24 C -0.258 4.258 25 N -0.637 5.637 26 Si 0.783 3.217 27 H -0.200 1.200 28 H -0.226 1.226 29 H -0.174 1.174 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.198 0.802 36 H 0.203 0.797 37 H 0.182 0.818 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.035 0.965 43 H 0.046 0.954 44 H 0.200 0.800 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.462 0.541 -32.534 32.542 hybrid contribution -0.329 -1.011 1.063 1.504 sum 0.133 -0.470 -31.471 31.475 Atomic orbital electron populations 1.21866 0.95733 1.00907 1.01914 1.21463 0.95841 1.00652 0.93200 0.87368 1.22386 1.02122 0.78280 0.99182 1.48062 1.54422 1.12720 1.16931 1.18346 0.77388 0.86526 0.82941 1.90807 1.57712 1.17104 1.80115 1.19989 0.93683 1.04601 1.00381 1.21352 1.00305 0.90486 0.91963 1.21501 0.94278 1.02084 0.98586 1.17610 0.93147 0.91355 0.85039 1.91572 1.91500 1.74204 1.53319 1.21084 1.02962 1.00585 0.96762 1.17470 0.85563 0.92206 0.91748 1.91548 1.66752 1.74816 1.78616 1.21612 1.01089 0.95033 0.82744 1.21908 1.00851 0.96315 0.97278 1.21294 1.00954 0.94017 0.93875 0.89520 1.20865 0.95447 0.95287 0.85004 1.42736 1.57712 1.37541 1.02274 1.19036 1.22482 1.10681 0.84200 0.92881 1.25547 1.02829 1.02809 0.94634 1.69900 1.50401 1.45356 0.98057 0.85397 0.79253 0.79601 0.77471 1.20007 1.22635 1.17383 0.93227 0.91411 0.94464 0.87505 0.87064 0.80203 0.79682 0.81788 0.88985 0.90839 0.91838 0.92694 0.96537 0.95391 0.80003 0.93399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.38 71.98 0.60 -2.49 16 2 C -0.09 -1.63 2.72 -10.72 -0.03 -1.66 16 3 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 4 C 0.10 1.28 4.93 86.36 0.43 1.70 16 5 N -0.59 -11.65 2.41 -822.63 -1.98 -13.63 16 6 C 0.56 13.38 6.91 86.71 0.60 13.98 16 7 O -0.58 -19.23 16.28 -4.00 -0.07 -19.29 16 8 C -0.18 -3.18 4.89 -20.05 -0.10 -3.27 16 9 C -0.02 -0.19 7.42 22.51 0.17 -0.02 16 10 C -0.15 -0.88 10.01 22.28 0.22 -0.66 16 11 C 0.15 1.55 7.30 22.46 0.16 1.72 16 12 F -0.13 -1.47 17.26 44.97 0.78 -0.70 16 13 C -0.19 -2.67 9.99 22.32 0.22 -2.44 16 14 C 0.15 2.91 7.27 22.66 0.16 3.07 16 15 F -0.14 -3.59 16.65 44.97 0.75 -2.84 16 16 C 0.12 2.69 6.42 86.36 0.55 3.24 16 17 C -0.13 -3.38 4.90 30.67 0.15 -3.23 16 18 C -0.08 -2.06 1.96 -10.77 -0.02 -2.08 16 19 H 0.09 1.98 8.14 -2.39 -0.02 1.97 16 20 C 0.16 5.68 5.18 86.38 0.45 6.13 16 21 N -0.76 -34.37 5.12 -343.45 -1.76 -36.12 16 22 C -0.23 -13.29 10.47 84.03 0.88 -12.41 16 23 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 24 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 25 N -0.99 -63.71 13.97 21.65 0.30 -63.40 16 26 Si 0.96 45.14 27.74 68.60 1.90 47.05 16 27 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 28 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 29 H -0.25 -10.50 6.52 99.48 0.65 -9.85 16 30 H 0.05 1.20 6.58 -2.39 -0.02 1.19 16 31 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.04 0.93 5.97 -2.39 -0.01 0.92 16 33 H 0.11 0.80 8.14 -2.39 -0.02 0.79 16 34 H 0.11 0.94 4.73 -2.39 -0.01 0.93 16 35 H 0.18 0.46 7.37 -2.92 -0.02 0.43 16 36 H 0.19 -0.09 8.06 -2.91 -0.02 -0.11 16 37 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.07 1.99 7.03 -2.39 -0.02 1.97 16 40 H 0.06 1.95 7.15 -2.38 -0.02 1.93 16 41 H 0.05 1.66 6.34 -2.39 -0.02 1.64 16 42 H 0.02 0.64 6.74 -2.39 -0.02 0.62 16 43 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 44 H 0.37 15.69 4.71 -92.71 -0.44 15.25 16 45 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -78.61 362.38 5.39 -73.23 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.54 Total: 17.65 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 4.92 Total: -1.93 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -3.44 Total: -113.16 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.07 Total: -19.29 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 1.53 Total: -3.54 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.05 kcal Total: -78.61 5.39 -73.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185595074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.778 kcal (2) G-P(sol) polarization free energy of solvation -78.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds