Wall clock time and date at job start Tue Mar 31 2020 20:43:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08996 * 109.52360 * 2 1
4 4 C 1.53195 * 109.50019 * 239.91293 * 2 1 3
5 5 N 1.46924 * 108.77740 * 294.68450 * 4 2 1
6 6 C 1.34778 * 120.62643 * 126.36466 * 5 4 2
7 7 O 1.21590 * 119.99497 * 175.88216 * 6 5 4
8 8 C 1.47569 * 120.00405 * 355.88235 * 6 5 4
9 9 C 1.39737 * 120.13571 * 54.25964 * 8 6 5
10 10 C 1.37736 * 119.90051 * 180.02562 * 9 8 6
11 11 C 1.38762 * 120.19279 * 0.02562 * 10 9 8
12 12 F 1.35102 * 119.85933 * 179.97438 * 11 10 9
13 13 C 1.38498 * 120.28283 * 0.02562 * 11 10 9
14 14 C 1.38195 * 120.09544 * 359.66538 * 13 11 10
15 15 F 1.35098 * 120.09853 * 180.32296 * 14 13 11
16 16 C 1.46923 * 118.74179 * 306.39138 * 5 4 2
17 17 C 1.53197 * 108.77242 * 53.60798 * 16 5 4
18 18 C 1.53039 * 109.31468 * 305.36428 * 17 16 5
19 19 H 1.09003 * 109.46079 * 301.36232 * 18 17 16
20 20 C 1.53000 * 109.46112 * 181.39015 * 18 17 16
21 21 N 1.46498 * 109.47312 * 65.00330 * 20 18 17
22 22 C 1.36933 * 119.99957 * 180.02562 * 21 20 18
23 23 H 1.07999 * 120.00194 * 359.97438 * 22 21 20
24 24 C 1.38814 * 119.99776 * 179.97438 * 22 21 20
25 25 N 1.31628 * 119.99640 * 179.97438 * 24 22 21
26 26 Si 1.86801 * 120.00156 * 359.97438 * 24 22 21
27 27 H 1.48497 * 109.47132 * 90.00241 * 26 24 22
28 28 H 1.48500 * 109.46992 * 210.00090 * 26 24 22
29 29 H 1.48493 * 109.47104 * 330.00192 * 26 24 22
30 30 H 1.08996 * 109.47808 * 299.92113 * 1 2 3
31 31 H 1.09005 * 109.47210 * 59.92504 * 1 2 3
32 32 H 1.09000 * 109.47154 * 179.97438 * 1 2 3
33 33 H 1.08999 * 109.58234 * 174.89552 * 4 2 1
34 34 H 1.08995 * 109.69922 * 54.54190 * 4 2 1
35 35 H 1.07991 * 120.05385 * 0.02648 * 9 8 6
36 36 H 1.08001 * 119.90715 * 180.02562 * 10 9 8
37 37 H 1.08004 * 119.95180 * 179.97438 * 13 11 10
38 38 H 1.09000 * 109.58791 * 293.82493 * 16 5 4
39 39 H 1.08996 * 109.59018 * 173.39300 * 16 5 4
40 40 H 1.09011 * 109.49455 * 185.41772 * 17 16 5
41 41 H 1.08997 * 109.52711 * 65.33541 * 17 16 5
42 42 H 1.08998 * 109.47074 * 304.99635 * 20 18 17
43 43 H 1.09008 * 109.46712 * 185.00054 * 20 18 17
44 44 H 0.97004 * 120.00100 * 359.97438 * 21 20 18
45 45 H 0.97001 * 119.99474 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8942 1.0273 0.0000
4 6 2.0413 -0.7239 -1.2495
5 7 1.6516 -2.1383 -1.1694
6 6 0.9740 -2.7219 -2.1778
7 8 0.7226 -3.9107 -2.1332
8 6 0.5373 -1.9183 -3.3358
9 6 1.4652 -1.1573 -4.0517
10 6 1.0522 -0.4086 -5.1314
11 6 -0.2828 -0.4073 -5.5101
12 9 -0.6806 0.3300 -6.5700
13 6 -1.2093 -1.1578 -4.8055
14 6 -0.8067 -1.9184 -3.7241
15 9 -1.7093 -2.6556 -3.0408
16 6 2.0140 -2.9041 0.0309
17 6 1.5029 -2.1557 1.2661
18 6 2.0407 -0.7231 1.2485
19 1 3.1304 -0.7444 1.2352
20 6 1.5605 0.0171 2.4985
21 7 2.1479 -0.6027 3.6888
22 6 1.8591 -0.1068 4.9321
23 1 1.1987 0.7415 5.0352
24 6 2.4152 -0.6945 6.0601
25 7 2.1380 -0.2175 7.2552
26 14 3.5569 -2.1622 5.8820
27 1 4.9569 -1.6865 5.7442
28 1 3.4438 -3.0261 7.0845
29 1 3.1778 -2.9407 4.6757
30 1 -0.3634 0.5126 0.8906
31 1 -0.3634 0.5150 -0.8893
32 1 -0.3633 -1.0277 -0.0005
33 1 3.1275 -0.6463 -1.2978
34 1 1.6028 -0.2739 -2.1401
35 1 2.5047 -1.1562 -3.7588
36 1 1.7694 0.1793 -5.6850
37 1 -2.2470 -1.1526 -5.1046
38 1 3.0979 -3.0043 0.0870
39 1 1.5554 -3.8919 -0.0135
40 1 1.8480 -2.6627 2.1673
41 1 0.4131 -2.1354 1.2547
42 1 0.4736 -0.0385 2.5586
43 1 1.8684 1.0613 2.4431
44 1 2.7407 -1.3649 3.5964
45 1 2.5264 -0.6284 8.0434
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001185595074.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:43:20
Heat of formation + Delta-G solvation = -103.003775 kcal
Electronic energy + Delta-G solvation = -29881.792789 eV
Core-core repulsion = 25534.754820 eV
Total energy + Delta-G solvation = -4347.037969 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.155 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-50.20082 -50.10261 -41.79988 -39.83661 -38.97547 -36.75103 -34.77796 -33.39323
-33.03434 -31.96377 -31.43861 -28.79720 -27.82555 -25.72782 -24.83556 -24.39955
-23.60230 -22.91464 -21.43392 -20.08937 -19.50844 -19.17649 -18.58746 -18.20765
-17.43783 -17.06173 -16.85609 -16.73170 -16.46465 -16.30848 -16.04087 -15.74814
-15.57001 -15.43159 -15.20158 -15.05233 -14.78123 -14.68995 -14.11820 -14.01925
-13.75236 -13.64286 -13.48777 -13.26693 -13.07013 -12.84307 -12.74820 -12.57437
-12.46027 -12.18405 -12.08099 -11.86213 -11.58261 -11.44365 -11.28932 -11.05784
-10.93378 -10.19021 -9.93916 -9.67782 -9.26974 -8.02682 -5.35491 -0.47906
-0.12400 1.37128 1.38297 1.41426 1.48658 1.81836 2.25378 2.48580
2.68387 3.15996 3.25818 3.28925 3.48432 3.55827 3.72980 3.78768
3.81673 3.98476 4.00862 4.09438 4.26523 4.37800 4.40085 4.56705
4.61308 4.62102 4.65376 4.73197 4.75492 4.78898 4.86662 4.88487
4.93731 4.97820 5.03991 5.15083 5.17240 5.25220 5.27453 5.47786
5.56503 5.58472 5.76419 6.21662 6.25173 6.94028 7.09143 7.85993
8.04986 9.19170
Molecular weight = 338.15amu
Principal moments of inertia in cm(-1)
A = 0.022470 B = 0.002653 C = 0.002567
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1245.800205 B =10551.988850 C =10903.077688
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.092 4.092
3 H 0.108 0.892
4 C 0.101 3.899
5 N -0.590 5.590
6 C 0.559 3.441
7 O -0.577 6.577
8 C -0.182 4.182
9 C -0.023 4.023
10 C -0.146 4.146
11 C 0.148 3.852
12 F -0.128 7.128
13 C -0.194 4.194
14 C 0.150 3.850
15 F -0.139 7.139
16 C 0.117 3.883
17 C -0.125 4.125
18 C -0.083 4.083
19 H 0.087 0.913
20 C 0.160 3.840
21 N -0.757 5.757
22 C -0.233 4.233
23 H 0.053 0.947
24 C -0.067 4.067
25 N -0.986 5.986
26 Si 0.956 3.044
27 H -0.274 1.274
28 H -0.299 1.299
29 H -0.249 1.249
30 H 0.049 0.951
31 H 0.067 0.933
32 H 0.036 0.964
33 H 0.107 0.893
34 H 0.111 0.889
35 H 0.181 0.819
36 H 0.186 0.814
37 H 0.165 0.835
38 H 0.092 0.908
39 H 0.073 0.927
40 H 0.063 0.937
41 H 0.054 0.946
42 H 0.017 0.983
43 H 0.028 0.972
44 H 0.366 0.634
45 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.743 1.010 -32.693 32.717
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.112 4.112
3 H 0.126 0.874
4 C -0.020 4.020
5 N -0.321 5.321
6 C 0.348 3.652
7 O -0.457 6.457
8 C -0.187 4.187
9 C -0.041 4.041
10 C -0.164 4.164
11 C 0.128 3.872
12 F -0.106 7.106
13 C -0.214 4.214
14 C 0.130 3.870
15 F -0.117 7.117
16 C -0.005 4.005
17 C -0.164 4.164
18 C -0.101 4.101
19 H 0.105 0.895
20 C 0.034 3.966
21 N -0.403 5.403
22 C -0.364 4.364
23 H 0.071 0.929
24 C -0.258 4.258
25 N -0.637 5.637
26 Si 0.783 3.217
27 H -0.200 1.200
28 H -0.226 1.226
29 H -0.174 1.174
30 H 0.068 0.932
31 H 0.086 0.914
32 H 0.055 0.945
33 H 0.125 0.875
34 H 0.129 0.871
35 H 0.198 0.802
36 H 0.203 0.797
37 H 0.182 0.818
38 H 0.110 0.890
39 H 0.092 0.908
40 H 0.082 0.918
41 H 0.073 0.927
42 H 0.035 0.965
43 H 0.046 0.954
44 H 0.200 0.800
45 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 0.462 0.541 -32.534 32.542
hybrid contribution -0.329 -1.011 1.063 1.504
sum 0.133 -0.470 -31.471 31.475
Atomic orbital electron populations
1.21866 0.95733 1.00907 1.01914 1.21463 0.95841 1.00652 0.93200
0.87368 1.22386 1.02122 0.78280 0.99182 1.48062 1.54422 1.12720
1.16931 1.18346 0.77388 0.86526 0.82941 1.90807 1.57712 1.17104
1.80115 1.19989 0.93683 1.04601 1.00381 1.21352 1.00305 0.90486
0.91963 1.21501 0.94278 1.02084 0.98586 1.17610 0.93147 0.91355
0.85039 1.91572 1.91500 1.74204 1.53319 1.21084 1.02962 1.00585
0.96762 1.17470 0.85563 0.92206 0.91748 1.91548 1.66752 1.74816
1.78616 1.21612 1.01089 0.95033 0.82744 1.21908 1.00851 0.96315
0.97278 1.21294 1.00954 0.94017 0.93875 0.89520 1.20865 0.95447
0.95287 0.85004 1.42736 1.57712 1.37541 1.02274 1.19036 1.22482
1.10681 0.84200 0.92881 1.25547 1.02829 1.02809 0.94634 1.69900
1.50401 1.45356 0.98057 0.85397 0.79253 0.79601 0.77471 1.20007
1.22635 1.17383 0.93227 0.91411 0.94464 0.87505 0.87064 0.80203
0.79682 0.81788 0.88985 0.90839 0.91838 0.92694 0.96537 0.95391
0.80003 0.93399
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.09 8.38 71.98 0.60 -2.49 16
2 C -0.09 -1.63 2.72 -10.72 -0.03 -1.66 16
3 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16
4 C 0.10 1.28 4.93 86.36 0.43 1.70 16
5 N -0.59 -11.65 2.41 -822.63 -1.98 -13.63 16
6 C 0.56 13.38 6.91 86.71 0.60 13.98 16
7 O -0.58 -19.23 16.28 -4.00 -0.07 -19.29 16
8 C -0.18 -3.18 4.89 -20.05 -0.10 -3.27 16
9 C -0.02 -0.19 7.42 22.51 0.17 -0.02 16
10 C -0.15 -0.88 10.01 22.28 0.22 -0.66 16
11 C 0.15 1.55 7.30 22.46 0.16 1.72 16
12 F -0.13 -1.47 17.26 44.97 0.78 -0.70 16
13 C -0.19 -2.67 9.99 22.32 0.22 -2.44 16
14 C 0.15 2.91 7.27 22.66 0.16 3.07 16
15 F -0.14 -3.59 16.65 44.97 0.75 -2.84 16
16 C 0.12 2.69 6.42 86.36 0.55 3.24 16
17 C -0.13 -3.38 4.90 30.67 0.15 -3.23 16
18 C -0.08 -2.06 1.96 -10.77 -0.02 -2.08 16
19 H 0.09 1.98 8.14 -2.39 -0.02 1.97 16
20 C 0.16 5.68 5.18 86.38 0.45 6.13 16
21 N -0.76 -34.37 5.12 -343.45 -1.76 -36.12 16
22 C -0.23 -13.29 10.47 84.03 0.88 -12.41 16
23 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16
24 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16
25 N -0.99 -63.71 13.97 21.65 0.30 -63.40 16
26 Si 0.96 45.14 27.74 68.60 1.90 47.05 16
27 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16
28 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16
29 H -0.25 -10.50 6.52 99.48 0.65 -9.85 16
30 H 0.05 1.20 6.58 -2.39 -0.02 1.19 16
31 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16
32 H 0.04 0.93 5.97 -2.39 -0.01 0.92 16
33 H 0.11 0.80 8.14 -2.39 -0.02 0.79 16
34 H 0.11 0.94 4.73 -2.39 -0.01 0.93 16
35 H 0.18 0.46 7.37 -2.92 -0.02 0.43 16
36 H 0.19 -0.09 8.06 -2.91 -0.02 -0.11 16
37 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16
38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16
39 H 0.07 1.99 7.03 -2.39 -0.02 1.97 16
40 H 0.06 1.95 7.15 -2.38 -0.02 1.93 16
41 H 0.05 1.66 6.34 -2.39 -0.02 1.64 16
42 H 0.02 0.64 6.74 -2.39 -0.02 0.62 16
43 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16
44 H 0.37 15.69 4.71 -92.71 -0.44 15.25 16
45 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16
Total: -1.00 -78.61 362.38 5.39 -73.23
By element:
Atomic # 1 Polarization: 17.11 SS G_CDS: 0.54 Total: 17.65 kcal
Atomic # 6 Polarization: -6.85 SS G_CDS: 4.92 Total: -1.93 kcal
Atomic # 7 Polarization: -109.72 SS G_CDS: -3.44 Total: -113.16 kcal
Atomic # 8 Polarization: -19.23 SS G_CDS: -0.07 Total: -19.29 kcal
Atomic # 9 Polarization: -5.06 SS G_CDS: 1.53 Total: -3.54 kcal
Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.05 kcal
Total: -78.61 5.39 -73.23 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001185595074.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.778 kcal
(2) G-P(sol) polarization free energy of solvation -78.612 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.390 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.386 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.226 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.004 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds