Wall clock time and date at job start Tue Mar 31 2020 20:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.52475 * 2 1 4 4 C 1.53197 * 109.49325 * 120.07553 * 2 1 3 5 5 N 1.46929 * 108.89273 * 174.65675 * 4 2 1 6 6 C 1.34774 * 120.63027 * 126.33968 * 5 4 2 7 7 O 1.21550 * 120.00172 * 354.16892 * 6 5 4 8 8 C 1.47859 * 119.99838 * 174.16691 * 6 5 4 9 9 C 1.39547 * 120.12417 * 318.63604 * 8 6 5 10 10 C 1.38208 * 119.87793 * 179.81099 * 9 8 6 11 11 F 1.35103 * 119.93743 * 180.22942 * 10 9 8 12 12 C 1.38521 * 120.12074 * 0.44312 * 10 9 8 13 13 C 1.38539 * 120.24475 * 359.78862 * 12 10 9 14 14 F 1.35102 * 119.93676 * 179.97438 * 13 12 10 15 15 C 1.38198 * 120.12207 * 359.97438 * 13 12 10 16 16 C 1.46928 * 118.73660 * 306.32192 * 5 4 2 17 17 C 1.53188 * 108.77661 * 53.61014 * 16 5 4 18 18 C 1.53043 * 109.31208 * 305.36326 * 17 16 5 19 19 H 1.09007 * 109.46085 * 301.34694 * 18 17 16 20 20 C 1.53000 * 109.46459 * 181.38859 * 18 17 16 21 21 N 1.46504 * 109.46923 * 64.99693 * 20 18 17 22 22 C 1.36940 * 119.99669 * 180.02562 * 21 20 18 23 23 H 1.07997 * 120.00408 * 359.97438 * 22 21 20 24 24 C 1.38816 * 119.99717 * 180.02562 * 22 21 20 25 25 N 1.31624 * 120.00122 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99934 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47304 * 89.99334 * 26 24 22 28 28 H 1.48497 * 109.47123 * 209.99536 * 26 24 22 29 29 H 1.48501 * 109.47017 * 329.99591 * 26 24 22 30 30 H 1.09002 * 109.47085 * 299.92611 * 1 2 3 31 31 H 1.09003 * 109.46856 * 59.92152 * 1 2 3 32 32 H 1.08995 * 109.47389 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.58618 * 54.79989 * 4 2 1 34 34 H 1.08999 * 109.58590 * 294.51386 * 4 2 1 35 35 H 1.08001 * 120.05801 * 359.97438 * 9 8 6 36 36 H 1.07999 * 119.88017 * 179.76510 * 12 10 9 37 37 H 1.07996 * 120.06224 * 179.97438 * 15 13 12 38 38 H 1.09004 * 109.58506 * 173.39328 * 16 5 4 39 39 H 1.08993 * 109.58907 * 293.81878 * 16 5 4 40 40 H 1.08999 * 109.50328 * 65.31306 * 17 16 5 41 41 H 1.08998 * 109.50108 * 185.41292 * 17 16 5 42 42 H 1.08995 * 109.47651 * 184.99861 * 20 18 17 43 43 H 1.09006 * 109.46728 * 305.00054 * 20 18 17 44 44 H 0.97000 * 120.00102 * 359.97438 * 21 20 18 45 45 H 0.96993 * 119.99992 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7237 1.2497 5 7 3.5047 -0.8290 1.1733 6 6 4.2788 -0.3851 2.1833 7 8 3.7763 0.2030 3.1209 8 6 5.7393 -0.6136 2.1508 9 6 6.2468 -1.8405 1.7215 10 6 7.6130 -2.0473 1.6895 11 9 8.1058 -3.2330 1.2696 12 6 8.4777 -1.0424 2.0913 13 6 7.9791 0.1759 2.5230 14 9 8.8281 1.1514 2.9140 15 6 6.6150 0.3952 2.5545 16 6 4.1082 -1.4279 -0.0250 17 6 3.5767 -0.6976 -1.2623 18 6 2.0466 -0.7257 -1.2482 19 1 1.7024 -1.7599 -1.2348 20 6 1.5122 -0.0273 -2.5002 21 7 1.9031 -0.7894 -3.6889 22 6 1.5351 -0.3529 -4.9336 23 1 0.9564 0.5528 -5.0390 24 6 1.9050 -1.0753 -6.0598 25 7 2.6099 -2.1794 -5.9313 26 14 1.4024 -0.4804 -7.7577 27 1 2.4514 0.4219 -8.2967 28 1 1.2396 -1.6464 -8.6626 29 1 0.1165 0.2565 -7.6634 30 1 -0.3633 0.5127 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6051 -1.7215 1.2982 34 1 1.7615 -0.1590 2.1391 35 1 5.5733 -2.6262 1.4123 36 1 9.5444 -1.2095 2.0683 37 1 6.2274 1.3452 2.8916 38 1 5.1924 -1.3256 0.0219 39 1 3.8407 -2.4830 -0.0805 40 1 3.9216 0.3364 -1.2507 41 1 3.9413 -1.1931 -2.1620 42 1 0.4251 0.0315 -2.4476 43 1 1.9280 0.9786 -2.5605 44 1 2.4232 -1.6026 -3.5942 45 1 2.8687 -2.6839 -6.7182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185639021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:29 Heat of formation + Delta-G solvation = -88.980480 kcal Electronic energy + Delta-G solvation = -29320.646295 eV Core-core repulsion = 24974.216422 eV Total energy + Delta-G solvation = -4346.429873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.42236 -49.39674 -40.90084 -38.90053 -37.84750 -35.14605 -33.75800 -32.13152 -31.57381 -30.85236 -30.36304 -27.03744 -26.97551 -24.67968 -23.49986 -23.31625 -22.50305 -21.42439 -20.41383 -19.58667 -18.28608 -17.70143 -17.19355 -16.95283 -16.67811 -16.37960 -16.13944 -15.99878 -15.70492 -15.19123 -14.87527 -14.72428 -14.54785 -14.14932 -13.97714 -13.61367 -13.49522 -13.13859 -13.04422 -12.71845 -12.58404 -12.44381 -12.34721 -12.19674 -11.96918 -11.82057 -11.65280 -11.02795 -10.93864 -10.84384 -10.44967 -10.43115 -10.23441 -10.14256 -9.97612 -9.66242 -9.52819 -9.20835 -8.89002 -8.74951 -6.93006 -5.79246 -3.07169 0.17708 0.46752 2.26060 2.60925 3.00493 3.37978 3.41804 3.47373 3.48650 3.88722 3.95547 4.27344 4.39997 4.49060 4.56258 4.72590 4.83930 4.87948 5.00732 5.04290 5.22773 5.27704 5.36375 5.39935 5.41514 5.48459 5.54854 5.56474 5.63360 5.71822 5.79288 5.85044 5.92127 6.02097 6.15101 6.20375 6.23857 6.27594 6.37396 6.44956 6.57004 6.79540 6.89227 7.13714 7.68242 7.82471 8.40228 9.51463 10.09395 10.43891 11.43717 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.002843 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.090773 B = 9845.551500 C =11194.103271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.074 0.926 4 C 0.117 3.883 5 N -0.597 5.597 6 C 0.561 3.439 7 O -0.532 6.532 8 C -0.066 4.066 9 C -0.135 4.135 10 C 0.129 3.871 11 F -0.124 7.124 12 C -0.173 4.173 13 C 0.129 3.871 14 F -0.126 7.126 15 C -0.113 4.113 16 C 0.093 3.907 17 C -0.126 4.126 18 C -0.089 4.089 19 H 0.073 0.927 20 C 0.156 3.844 21 N -0.732 5.732 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.091 0.909 42 H 0.025 0.975 43 H 0.016 0.984 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.252 0.881 19.530 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.092 0.908 4 C -0.005 4.005 5 N -0.329 5.329 6 C 0.348 3.652 7 O -0.409 6.409 8 C -0.069 4.069 9 C -0.154 4.154 10 C 0.110 3.890 11 F -0.103 7.103 12 C -0.193 4.193 13 C 0.109 3.891 14 F -0.105 7.105 15 C -0.133 4.133 16 C -0.029 4.029 17 C -0.164 4.164 18 C -0.108 4.108 19 H 0.091 0.909 20 C 0.029 3.971 21 N -0.376 5.376 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.171 0.829 36 H 0.171 0.829 37 H 0.170 0.830 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.110 0.890 42 H 0.042 0.958 43 H 0.034 0.966 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.936 1.268 19.883 21.445 hybrid contribution 0.303 -0.084 -1.150 1.192 sum 8.239 1.184 18.733 20.499 Atomic orbital electron populations 1.21820 0.94208 1.02253 1.02147 1.21516 0.96218 0.99976 0.93992 0.90778 1.21793 0.77831 1.01249 0.99584 1.48061 1.07323 1.59706 1.17761 1.18034 0.85546 0.78898 0.82688 1.90804 1.74388 1.41104 1.34646 1.19511 0.93932 0.93784 0.99679 1.21494 0.94152 0.98572 1.01195 1.17059 0.91215 0.81944 0.98797 1.91583 1.88101 1.43290 1.87306 1.21219 1.02026 0.92418 1.03593 1.17065 0.87145 0.85744 0.99144 1.91567 1.69981 1.60659 1.88244 1.21206 0.90727 1.01076 1.00258 1.22271 0.98581 0.97715 0.84315 1.21943 0.96151 1.01235 0.97052 1.21410 0.94591 1.00239 0.94597 0.90865 1.20750 0.96705 0.94047 0.85603 1.42374 1.65480 1.28918 1.00848 1.19225 1.27732 1.06161 0.83818 0.91292 1.24718 1.00953 0.97498 0.97795 1.69646 1.42844 1.17192 1.28617 0.86207 0.78067 0.77462 0.84569 1.21756 1.21786 1.20801 0.92928 0.91241 0.92450 0.91042 0.88968 0.82875 0.82851 0.82999 0.89333 0.90589 0.91644 0.89026 0.95761 0.96579 0.78329 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.83 37.16 0.33 -1.33 16 2 C -0.10 -1.19 2.43 -90.34 -0.22 -1.41 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 4 C 0.12 1.32 5.72 -3.71 -0.02 1.30 16 5 N -0.60 -6.83 2.97 -173.87 -0.52 -7.34 16 6 C 0.56 6.91 7.31 -12.32 -0.09 6.82 16 7 O -0.53 -8.07 16.36 5.32 0.09 -7.99 16 8 C -0.07 -0.67 5.08 -104.98 -0.53 -1.21 16 9 C -0.13 -1.20 7.37 -39.10 -0.29 -1.48 16 10 C 0.13 1.13 7.29 -39.49 -0.29 0.84 16 11 F -0.12 -1.17 17.26 2.25 0.04 -1.13 16 12 C -0.17 -1.39 10.00 -39.37 -0.39 -1.78 16 13 C 0.13 1.15 7.29 -39.48 -0.29 0.86 16 14 F -0.13 -1.18 17.26 2.25 0.04 -1.14 16 15 C -0.11 -1.09 9.63 -39.11 -0.38 -1.47 16 16 C 0.09 1.00 4.92 -3.71 -0.02 0.99 16 17 C -0.13 -1.73 5.25 -26.61 -0.14 -1.87 16 18 C -0.09 -1.30 1.74 -90.42 -0.16 -1.46 16 19 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 20 C 0.16 2.96 5.41 -4.04 -0.02 2.94 16 21 N -0.73 -17.66 5.32 -59.90 -0.32 -17.98 16 22 C -0.24 -6.51 9.99 -15.06 -0.15 -6.66 16 23 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 26 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.86 6.33 -51.93 -0.33 0.53 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16 35 H 0.15 1.19 6.70 -52.49 -0.35 0.83 16 36 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 37 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 38 H 0.09 0.86 4.80 -51.93 -0.25 0.61 16 39 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.09 1.46 7.15 -51.93 -0.37 1.08 16 42 H 0.02 0.47 6.16 -51.93 -0.32 0.15 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.38 9.59 6.85 -40.82 -0.28 9.31 16 45 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 369.22 15.07 5.56 5.56 Total: -1.00 -31.00 369.22 -8.20 -39.20 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.04 Total: 5.94 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -2.75 Total: -5.41 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.11 Total: -52.11 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.09 Total: -7.99 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.08 Total: -2.27 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.00 -8.20 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185639021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.781 kcal (2) G-P(sol) polarization free energy of solvation -31.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds