Wall clock time and date at job start Tue Mar 31 2020 20:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.52475 * 2 1 4 4 C 1.53197 * 109.49325 * 120.07553 * 2 1 3 5 5 N 1.46929 * 108.89273 * 174.65675 * 4 2 1 6 6 C 1.34774 * 120.63027 * 126.33968 * 5 4 2 7 7 O 1.21550 * 120.00172 * 354.16892 * 6 5 4 8 8 C 1.47859 * 119.99838 * 174.16691 * 6 5 4 9 9 C 1.39547 * 120.12417 * 318.63604 * 8 6 5 10 10 C 1.38208 * 119.87793 * 179.81099 * 9 8 6 11 11 F 1.35103 * 119.93743 * 180.22942 * 10 9 8 12 12 C 1.38521 * 120.12074 * 0.44312 * 10 9 8 13 13 C 1.38539 * 120.24475 * 359.78862 * 12 10 9 14 14 F 1.35102 * 119.93676 * 179.97438 * 13 12 10 15 15 C 1.38198 * 120.12207 * 359.97438 * 13 12 10 16 16 C 1.46928 * 118.73660 * 306.32192 * 5 4 2 17 17 C 1.53188 * 108.77661 * 53.61014 * 16 5 4 18 18 C 1.53043 * 109.31208 * 305.36326 * 17 16 5 19 19 H 1.09007 * 109.46085 * 301.34694 * 18 17 16 20 20 C 1.53000 * 109.46459 * 181.38859 * 18 17 16 21 21 N 1.46504 * 109.46923 * 64.99693 * 20 18 17 22 22 C 1.36940 * 119.99669 * 180.02562 * 21 20 18 23 23 H 1.07997 * 120.00408 * 359.97438 * 22 21 20 24 24 C 1.38816 * 119.99717 * 180.02562 * 22 21 20 25 25 N 1.31624 * 120.00122 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99934 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47304 * 89.99334 * 26 24 22 28 28 H 1.48497 * 109.47123 * 209.99536 * 26 24 22 29 29 H 1.48501 * 109.47017 * 329.99591 * 26 24 22 30 30 H 1.09002 * 109.47085 * 299.92611 * 1 2 3 31 31 H 1.09003 * 109.46856 * 59.92152 * 1 2 3 32 32 H 1.08995 * 109.47389 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.58618 * 54.79989 * 4 2 1 34 34 H 1.08999 * 109.58590 * 294.51386 * 4 2 1 35 35 H 1.08001 * 120.05801 * 359.97438 * 9 8 6 36 36 H 1.07999 * 119.88017 * 179.76510 * 12 10 9 37 37 H 1.07996 * 120.06224 * 179.97438 * 15 13 12 38 38 H 1.09004 * 109.58506 * 173.39328 * 16 5 4 39 39 H 1.08993 * 109.58907 * 293.81878 * 16 5 4 40 40 H 1.08999 * 109.50328 * 65.31306 * 17 16 5 41 41 H 1.08998 * 109.50108 * 185.41292 * 17 16 5 42 42 H 1.08995 * 109.47651 * 184.99861 * 20 18 17 43 43 H 1.09006 * 109.46728 * 305.00054 * 20 18 17 44 44 H 0.97000 * 120.00102 * 359.97438 * 21 20 18 45 45 H 0.96993 * 119.99992 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0412 -0.7237 1.2497 5 7 3.5047 -0.8290 1.1733 6 6 4.2788 -0.3851 2.1833 7 8 3.7763 0.2030 3.1209 8 6 5.7393 -0.6136 2.1508 9 6 6.2468 -1.8405 1.7215 10 6 7.6130 -2.0473 1.6895 11 9 8.1058 -3.2330 1.2696 12 6 8.4777 -1.0424 2.0913 13 6 7.9791 0.1759 2.5230 14 9 8.8281 1.1514 2.9140 15 6 6.6150 0.3952 2.5545 16 6 4.1082 -1.4279 -0.0250 17 6 3.5767 -0.6976 -1.2623 18 6 2.0466 -0.7257 -1.2482 19 1 1.7024 -1.7599 -1.2348 20 6 1.5122 -0.0273 -2.5002 21 7 1.9031 -0.7894 -3.6889 22 6 1.5351 -0.3529 -4.9336 23 1 0.9564 0.5528 -5.0390 24 6 1.9050 -1.0753 -6.0598 25 7 2.6099 -2.1794 -5.9313 26 14 1.4024 -0.4804 -7.7577 27 1 2.4514 0.4219 -8.2967 28 1 1.2396 -1.6464 -8.6626 29 1 0.1165 0.2565 -7.6634 30 1 -0.3633 0.5127 0.8907 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6051 -1.7215 1.2982 34 1 1.7615 -0.1590 2.1391 35 1 5.5733 -2.6262 1.4123 36 1 9.5444 -1.2095 2.0683 37 1 6.2274 1.3452 2.8916 38 1 5.1924 -1.3256 0.0219 39 1 3.8407 -2.4830 -0.0805 40 1 3.9216 0.3364 -1.2507 41 1 3.9413 -1.1931 -2.1620 42 1 0.4251 0.0315 -2.4476 43 1 1.9280 0.9786 -2.5605 44 1 2.4232 -1.6026 -3.5942 45 1 2.8687 -2.6839 -6.7182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185639021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:28 Heat of formation + Delta-G solvation = -105.850669 kcal Electronic energy + Delta-G solvation = -29321.377842 eV Core-core repulsion = 24974.216422 eV Total energy + Delta-G solvation = -4347.161420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.13464 -50.10063 -41.82665 -39.81501 -38.85731 -36.61700 -35.12438 -33.52658 -32.36486 -32.01491 -31.56926 -28.46011 -27.89713 -25.92300 -24.93969 -24.06288 -23.59037 -22.71964 -21.42196 -20.63646 -19.25509 -18.99850 -18.45292 -17.73916 -17.50595 -17.12315 -17.04274 -16.81477 -16.65855 -16.41403 -16.12359 -15.72699 -15.54339 -15.45969 -15.24018 -15.12927 -14.53017 -14.32118 -14.14843 -13.89783 -13.80092 -13.25621 -13.18910 -13.08818 -12.96001 -12.93267 -12.86591 -12.72829 -12.65029 -12.17287 -11.96363 -11.88376 -11.63370 -11.54789 -11.17461 -11.12066 -10.87275 -10.27016 -9.92504 -9.74191 -8.94395 -7.93362 -5.20481 -0.55134 -0.23832 1.38058 1.48567 1.49153 1.57562 1.73108 2.23058 2.57339 2.65134 3.12497 3.20193 3.40294 3.58531 3.67406 3.72394 3.75294 3.81479 3.84724 3.98695 4.19555 4.24032 4.33690 4.39894 4.52159 4.57808 4.62270 4.67989 4.71661 4.74571 4.78143 4.80405 4.84251 4.87247 4.99752 5.11313 5.13583 5.21295 5.27829 5.36599 5.47363 5.50745 5.52805 5.60206 6.19505 6.29916 6.88126 7.36818 8.13514 8.37584 9.29861 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.002843 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.090773 B = 9845.551500 C =11194.103271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.064 0.936 4 C 0.120 3.880 5 N -0.595 5.595 6 C 0.563 3.437 7 O -0.565 6.565 8 C -0.078 4.078 9 C -0.127 4.127 10 C 0.126 3.874 11 F -0.127 7.127 12 C -0.160 4.160 13 C 0.125 3.875 14 F -0.129 7.129 15 C -0.116 4.116 16 C 0.101 3.899 17 C -0.121 4.121 18 C -0.079 4.079 19 H 0.073 0.927 20 C 0.156 3.844 21 N -0.741 5.741 22 C -0.244 4.244 23 H 0.070 0.930 24 C -0.071 4.071 25 N -0.965 5.965 26 Si 0.968 3.032 27 H -0.288 1.288 28 H -0.295 1.295 29 H -0.272 1.272 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.166 0.834 36 H 0.175 0.825 37 H 0.150 0.850 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.027 0.973 43 H 0.008 0.992 44 H 0.376 0.624 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.529 0.611 20.226 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.083 0.917 4 C -0.002 4.002 5 N -0.325 5.325 6 C 0.351 3.649 7 O -0.445 6.445 8 C -0.081 4.081 9 C -0.147 4.147 10 C 0.106 3.894 11 F -0.105 7.105 12 C -0.179 4.179 13 C 0.105 3.895 14 F -0.108 7.108 15 C -0.135 4.135 16 C -0.020 4.020 17 C -0.160 4.160 18 C -0.098 4.098 19 H 0.092 0.908 20 C 0.030 3.970 21 N -0.384 5.384 22 C -0.376 4.376 23 H 0.088 0.912 24 C -0.264 4.264 25 N -0.616 5.616 26 Si 0.797 3.203 27 H -0.216 1.216 28 H -0.221 1.221 29 H -0.197 1.197 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.184 0.816 36 H 0.193 0.807 37 H 0.168 0.832 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.026 0.974 44 H 0.209 0.791 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.197 1.021 20.593 22.188 hybrid contribution 0.224 0.050 -1.331 1.350 sum 8.421 1.071 19.262 21.050 Atomic orbital electron populations 1.21790 0.93297 1.02737 1.02329 1.21410 0.96920 0.99196 0.93221 0.91712 1.21794 0.77839 1.01991 0.98591 1.48093 1.07442 1.59338 1.17667 1.18278 0.86291 0.78098 0.82202 1.90785 1.75152 1.42645 1.35893 1.19329 0.92779 0.94654 1.01384 1.21571 0.94562 0.98206 1.00317 1.17061 0.91206 0.82007 0.99077 1.91583 1.88097 1.43453 1.87384 1.21417 1.03136 0.91553 1.01821 1.17043 0.86789 0.86063 0.99580 1.91563 1.69965 1.60872 1.88351 1.21249 0.91166 1.01041 1.00070 1.22256 0.99245 0.98039 0.82503 1.21833 0.95557 1.00868 0.97696 1.21296 0.95093 0.99885 0.93532 0.90844 1.20887 0.96786 0.93514 0.85840 1.42544 1.65308 1.29072 1.01502 1.19589 1.26869 1.05905 0.85279 0.91168 1.25466 1.01712 0.97985 1.01227 1.69785 1.44323 1.18369 1.29152 0.85222 0.78000 0.76775 0.80269 1.21574 1.22131 1.19712 0.91141 0.92657 0.91813 0.89317 0.89183 0.81637 0.80727 0.83182 0.87956 0.88773 0.92552 0.91305 0.95568 0.97383 0.79112 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.83 71.98 0.64 -2.41 16 2 C -0.09 -2.04 2.43 -10.61 -0.03 -2.07 16 3 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 4 C 0.12 2.49 5.72 86.36 0.49 2.98 16 5 N -0.59 -12.69 2.97 -822.29 -2.45 -15.14 16 6 C 0.56 13.25 7.31 86.79 0.63 13.88 16 7 O -0.56 -16.82 16.36 -3.87 -0.06 -16.89 16 8 C -0.08 -1.50 5.08 -20.10 -0.10 -1.60 16 9 C -0.13 -2.01 7.37 22.58 0.17 -1.84 16 10 C 0.13 1.93 7.29 22.33 0.16 2.09 16 11 F -0.13 -2.10 17.26 44.97 0.78 -1.33 16 12 C -0.16 -2.22 10.00 22.41 0.22 -2.00 16 13 C 0.12 2.04 7.29 22.33 0.16 2.21 16 14 F -0.13 -2.26 17.26 44.97 0.78 -1.48 16 15 C -0.12 -2.12 9.63 22.58 0.22 -1.91 16 16 C 0.10 2.02 4.92 86.36 0.42 2.44 16 17 C -0.12 -3.28 5.25 30.67 0.16 -3.12 16 18 C -0.08 -2.25 1.74 -10.66 -0.02 -2.27 16 19 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 20 C 0.16 5.91 5.41 86.38 0.47 6.38 16 21 N -0.74 -36.10 5.32 -343.44 -1.83 -37.92 16 22 C -0.24 -13.41 9.99 84.03 0.84 -12.57 16 23 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 24 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 25 N -0.97 -57.41 13.06 21.65 0.28 -57.12 16 26 Si 0.97 45.49 29.55 68.60 2.03 47.51 16 27 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 28 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 29 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.33 6.33 -2.39 -0.02 1.31 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.09 1.99 7.00 -2.39 -0.02 1.97 16 35 H 0.17 2.15 6.70 -2.91 -0.02 2.13 16 36 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 38 H 0.10 1.79 4.80 -2.38 -0.01 1.78 16 39 H 0.09 1.60 8.13 -2.39 -0.02 1.58 16 40 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 2.21 7.15 -2.39 -0.02 2.19 16 42 H 0.03 1.00 6.16 -2.39 -0.01 0.99 16 43 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 44 H 0.38 19.13 6.85 -92.71 -0.63 18.49 16 45 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -65.98 369.22 4.83 -61.15 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.40 Total: 24.58 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 4.91 Total: -3.36 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -3.99 Total: -110.19 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.06 Total: -16.89 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 1.55 Total: -2.81 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -65.98 4.83 -61.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185639021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.701 kcal (2) G-P(sol) polarization free energy of solvation -65.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds