Wall clock time and date at job start Tue Mar 31 2020 21:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.78764 * 2 1 4 4 C 1.54939 * 110.72330 * 236.75520 * 2 1 3 5 5 N 1.48537 * 103.22847 * 204.23141 * 4 2 1 6 6 C 1.46899 * 110.99989 * 159.72293 * 5 4 2 7 7 C 1.50698 * 109.46775 * 190.00060 * 6 5 4 8 8 C 1.35309 * 126.13365 * 95.02287 * 7 6 5 9 9 C 1.39870 * 107.92553 * 179.97438 * 8 7 6 10 10 N 1.30836 * 108.20025 * 359.97438 * 9 8 7 11 11 N 1.34947 * 126.12154 * 274.70397 * 7 6 5 12 12 C 1.46501 * 126.03839 * 0.04201 * 11 7 6 13 13 C 1.47894 * 105.82167 * 39.20440 * 5 4 2 14 14 C 1.53998 * 107.05997 * 334.66894 * 13 5 4 15 15 H 1.09007 * 110.39258 * 120.18043 * 14 13 5 16 16 N 1.46497 * 110.31181 * 242.31361 * 14 13 5 17 17 C 1.34777 * 119.99525 * 270.71198 * 16 14 13 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 14 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 14 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47157 * 59.99781 * 25 23 21 27 27 H 1.48496 * 109.47271 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46802 * 300.00045 * 25 23 21 29 29 H 1.09008 * 109.46868 * 296.74915 * 1 2 3 30 30 H 1.09001 * 109.47160 * 56.74176 * 1 2 3 31 31 H 1.09001 * 109.47447 * 176.74913 * 1 2 3 32 32 H 1.09011 * 110.66595 * 322.66230 * 4 2 1 33 33 H 1.09000 * 110.66988 * 85.78939 * 4 2 1 34 34 H 1.09003 * 109.46500 * 309.99515 * 6 5 4 35 35 H 1.09000 * 109.47351 * 69.99126 * 6 5 4 36 36 H 1.08010 * 126.03777 * 359.97438 * 8 7 6 37 37 H 1.08004 * 125.90050 * 179.97438 * 9 8 7 38 38 H 1.09003 * 109.47309 * 90.00118 * 12 11 7 39 39 H 1.09002 * 109.47075 * 209.99390 * 12 11 7 40 40 H 1.08997 * 109.47181 * 329.99718 * 12 11 7 41 41 H 1.09000 * 109.92007 * 215.32399 * 13 5 4 42 42 H 1.09000 * 109.92085 * 94.02245 * 13 5 4 43 43 H 0.97000 * 120.00580 * 90.71944 * 16 14 13 44 44 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 45 45 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 46 46 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0782 -0.7944 -1.2120 5 7 3.4318 -1.2093 -0.7623 6 6 3.9211 -2.3497 -1.5483 7 6 5.1736 -2.8968 -0.9135 8 6 5.2406 -3.9284 -0.0405 9 6 6.5834 -4.1143 0.3040 10 7 7.2971 -3.2264 -0.3396 11 7 6.4301 -2.4493 -1.1186 12 6 6.8186 -1.3439 -1.9980 13 6 3.2893 -1.5710 0.6646 14 6 2.0771 -0.7929 1.2092 15 1 1.3201 -1.4822 1.5833 16 7 2.4972 0.1249 2.2709 17 6 2.5241 -0.2936 3.5518 18 8 2.2009 -1.4302 3.8254 19 6 2.9621 0.6486 4.6433 20 16 2.8982 -0.2045 6.2383 21 6 3.4448 1.0909 7.3003 22 1 3.6966 2.0569 6.8883 23 6 3.5508 0.8702 8.6666 24 7 3.2424 -0.3067 9.1690 25 14 4.1295 2.2437 9.7925 26 1 3.1989 3.3961 9.6864 27 1 4.1552 1.7564 11.1950 28 1 5.4940 2.6708 9.3912 29 1 -0.3633 0.4626 0.9178 30 1 -0.3633 0.5636 -0.8593 31 1 -0.3634 -1.0260 -0.0583 32 1 1.4559 -1.6664 -1.4138 33 1 2.1443 -0.1556 -2.0927 34 1 3.1576 -3.1272 -1.5744 35 1 4.1415 -2.0229 -2.5645 36 1 4.4048 -4.5063 0.3256 37 1 6.9652 -4.8617 0.9838 38 1 6.8077 -0.4105 -1.4351 39 1 7.8217 -1.5229 -2.3852 40 1 6.1155 -1.2757 -2.8282 41 1 4.1886 -1.2872 1.2113 42 1 3.1160 -2.6429 0.7605 43 1 2.7560 1.0338 2.0522 44 1 3.9823 0.9803 4.4493 45 1 2.2975 1.5122 4.6663 46 1 3.3168 -0.4612 10.1237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206090017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:12 Heat of formation + Delta-G solvation = 50.054607 kcal Electronic energy + Delta-G solvation = -26859.281814 eV Core-core repulsion = 23105.014092 eV Total energy + Delta-G solvation = -3754.267722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.46239 -40.01619 -38.37115 -34.90261 -33.40862 -32.98080 -32.41163 -30.71437 -29.92104 -27.99253 -26.90893 -26.71077 -25.48201 -24.57063 -21.85042 -21.23049 -20.87724 -20.06135 -19.64443 -17.80289 -16.92606 -16.71793 -16.46363 -16.08258 -15.28372 -15.12376 -14.80976 -14.78840 -14.72984 -14.41576 -14.00423 -13.78702 -13.47550 -13.19086 -13.10037 -12.90885 -12.81136 -12.63231 -12.54619 -12.42450 -12.25067 -12.02339 -11.67488 -11.37751 -11.25950 -11.03735 -11.02496 -10.95994 -10.75822 -10.74654 -9.80814 -9.47250 -9.38125 -9.04865 -8.89911 -8.80916 -8.62520 -8.22391 -6.48104 -6.20008 -3.90436 1.66324 2.38141 2.70427 3.03926 3.09193 3.24734 3.28636 3.32280 3.66687 3.74736 4.09693 4.22148 4.31343 4.38612 4.48635 4.62925 4.80581 4.90564 5.01577 5.04945 5.10996 5.11792 5.15030 5.18650 5.20926 5.24518 5.29361 5.42245 5.52340 5.58472 5.59473 5.62485 5.75895 5.85270 5.89685 5.93618 5.94617 5.98489 6.15940 6.47876 6.53226 6.57408 6.68786 6.84909 7.58898 7.60750 7.72534 8.36531 8.62579 9.25166 10.87377 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011922 B = 0.002699 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.120114 B =10370.806719 C =11817.818435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.100 4.100 3 H 0.089 0.911 4 C 0.040 3.960 5 N -0.512 5.512 6 C 0.108 3.892 7 C 0.086 3.914 8 C -0.265 4.265 9 C 0.048 3.952 10 N -0.297 5.297 11 N -0.363 5.363 12 C 0.105 3.895 13 C 0.029 3.971 14 C 0.142 3.858 15 H 0.097 0.903 16 N -0.728 5.728 17 C 0.533 3.467 18 O -0.517 6.517 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.145 0.855 37 H 0.184 0.816 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.399 0.601 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.659 -0.967 -27.637 27.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 H 0.108 0.892 4 C -0.088 4.088 5 N -0.237 5.237 6 C -0.021 4.021 7 C -0.042 4.042 8 C -0.295 4.295 9 C -0.137 4.137 10 N -0.119 5.119 11 N -0.145 5.145 12 C -0.037 4.037 13 C -0.100 4.100 14 C 0.035 3.965 15 H 0.115 0.885 16 N -0.382 5.382 17 C 0.319 3.681 18 O -0.391 6.391 19 C -0.304 4.304 20 S 0.168 5.832 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.163 0.837 37 H 0.201 0.799 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.233 0.767 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.395 -2.002 -27.392 27.468 hybrid contribution -0.375 1.640 0.623 1.794 sum 0.020 -0.362 -26.769 26.772 Atomic orbital electron populations 1.21778 0.93687 1.02272 1.02404 1.22355 0.96175 1.00015 0.93399 0.89238 1.23329 0.88507 0.98898 0.98051 1.64935 1.23606 1.32156 1.03019 1.20815 0.91675 0.92660 0.96974 1.20774 0.87080 0.96517 0.99827 1.21299 0.98042 1.03824 1.06337 1.23839 0.92428 0.98104 0.99297 1.77388 1.17097 1.07434 1.09932 1.48429 1.03929 1.26979 1.35184 1.21794 1.02239 0.87066 0.92560 1.23378 0.99449 0.99130 0.88056 1.21809 0.95660 0.91949 0.87061 0.88481 1.46056 1.70428 1.15616 1.06144 1.20334 0.76583 0.88472 0.82704 1.90698 1.46438 1.19578 1.82359 1.23533 1.03977 1.02209 1.00705 1.85376 1.87701 1.18184 0.91960 1.22833 1.52063 0.99369 0.94199 0.91010 1.24985 0.94951 0.96409 0.97196 1.70009 1.45274 1.21567 1.13460 0.86229 0.79250 0.81068 0.78994 1.19952 1.20805 1.19929 0.91834 0.92199 0.92347 0.92953 0.89544 0.91743 0.89458 0.83709 0.79932 0.90466 0.89667 0.89749 0.89701 0.92371 0.76704 0.89286 0.89275 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.16 37.16 0.34 -0.71 16 2 C -0.10 -0.80 3.37 -88.76 -0.30 -1.10 16 3 H 0.09 0.69 7.76 -51.93 -0.40 0.28 16 4 C 0.04 0.27 6.00 -1.89 -0.01 0.26 16 5 N -0.51 -4.52 5.39 -231.89 -1.25 -5.77 16 6 C 0.11 0.85 5.18 -4.98 -0.03 0.83 16 7 C 0.09 0.92 5.53 -82.27 -0.45 0.46 16 8 C -0.26 -3.03 9.59 -40.02 -0.38 -3.42 16 9 C 0.05 0.59 12.03 -17.37 -0.21 0.38 16 10 N -0.30 -4.00 12.58 30.63 0.39 -3.61 16 11 N -0.36 -4.09 4.01 -63.89 -0.26 -4.34 16 12 C 0.10 0.78 11.27 59.85 0.67 1.45 16 13 C 0.03 0.33 5.31 -2.76 -0.01 0.32 16 14 C 0.14 1.63 2.92 -66.57 -0.19 1.43 16 15 H 0.10 1.30 7.26 -51.93 -0.38 0.92 16 16 N -0.73 -9.68 5.01 -52.49 -0.26 -9.94 16 17 C 0.53 9.89 7.85 -10.98 -0.09 9.80 16 18 O -0.52 -11.60 15.51 5.55 0.09 -11.52 16 19 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 20 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 21 C -0.54 -15.42 9.50 30.94 0.29 -15.12 16 22 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 25 Si 0.92 21.57 29.55 -169.99 -5.02 16.55 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 29 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 32 H 0.05 0.33 7.73 -51.92 -0.40 -0.07 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.46 7.89 -51.93 -0.41 0.05 16 35 H 0.09 0.53 7.23 -51.93 -0.38 0.15 16 36 H 0.15 1.48 7.92 -52.48 -0.42 1.07 16 37 H 0.18 1.73 8.06 -52.48 -0.42 1.31 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.42 7.14 -51.93 -0.37 0.05 16 41 H 0.08 1.25 7.92 -51.93 -0.41 0.83 16 42 H 0.06 0.71 6.74 -51.93 -0.35 0.36 16 43 H 0.40 4.28 8.38 -40.82 -0.34 3.94 16 44 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 45 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 46 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 391.75 15.07 5.90 5.90 Total: -1.00 -36.37 391.75 -9.34 -45.71 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.20 Total: 2.73 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -0.24 Total: -6.27 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: -0.65 Total: -49.29 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.37 -9.34 -45.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206090017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.765 kcal (2) G-P(sol) polarization free energy of solvation -36.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds