Wall clock time and date at job start Tue Mar 31 2020 21:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 110.78764 * 2 1 4 4 C 1.54939 * 110.72330 * 236.75520 * 2 1 3 5 5 N 1.48537 * 103.22847 * 204.23141 * 4 2 1 6 6 C 1.46899 * 110.99989 * 159.72293 * 5 4 2 7 7 C 1.50698 * 109.46775 * 190.00060 * 6 5 4 8 8 C 1.35309 * 126.13365 * 95.02287 * 7 6 5 9 9 C 1.39870 * 107.92553 * 179.97438 * 8 7 6 10 10 N 1.30836 * 108.20025 * 359.97438 * 9 8 7 11 11 N 1.34947 * 126.12154 * 274.70397 * 7 6 5 12 12 C 1.46501 * 126.03839 * 0.04201 * 11 7 6 13 13 C 1.47894 * 105.82167 * 39.20440 * 5 4 2 14 14 C 1.53998 * 107.05997 * 334.66894 * 13 5 4 15 15 H 1.09007 * 110.39258 * 120.18043 * 14 13 5 16 16 N 1.46497 * 110.31181 * 242.31361 * 14 13 5 17 17 C 1.34777 * 119.99525 * 270.71198 * 16 14 13 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 14 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 14 20 20 S 1.80997 * 109.47151 * 180.27780 * 19 17 16 21 21 C 1.76196 * 100.00314 * 179.97438 * 20 19 17 22 22 H 1.08005 * 120.00018 * 0.02562 * 21 20 19 23 23 C 1.38799 * 120.00626 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99674 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00584 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47157 * 59.99781 * 25 23 21 27 27 H 1.48496 * 109.47271 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.46802 * 300.00045 * 25 23 21 29 29 H 1.09008 * 109.46868 * 296.74915 * 1 2 3 30 30 H 1.09001 * 109.47160 * 56.74176 * 1 2 3 31 31 H 1.09001 * 109.47447 * 176.74913 * 1 2 3 32 32 H 1.09011 * 110.66595 * 322.66230 * 4 2 1 33 33 H 1.09000 * 110.66988 * 85.78939 * 4 2 1 34 34 H 1.09003 * 109.46500 * 309.99515 * 6 5 4 35 35 H 1.09000 * 109.47351 * 69.99126 * 6 5 4 36 36 H 1.08010 * 126.03777 * 359.97438 * 8 7 6 37 37 H 1.08004 * 125.90050 * 179.97438 * 9 8 7 38 38 H 1.09003 * 109.47309 * 90.00118 * 12 11 7 39 39 H 1.09002 * 109.47075 * 209.99390 * 12 11 7 40 40 H 1.08997 * 109.47181 * 329.99718 * 12 11 7 41 41 H 1.09000 * 109.92007 * 215.32399 * 13 5 4 42 42 H 1.09000 * 109.92085 * 94.02245 * 13 5 4 43 43 H 0.97000 * 120.00580 * 90.71944 * 16 14 13 44 44 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 45 45 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 46 46 H 0.97003 * 120.00297 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0782 -0.7944 -1.2120 5 7 3.4318 -1.2093 -0.7623 6 6 3.9211 -2.3497 -1.5483 7 6 5.1736 -2.8968 -0.9135 8 6 5.2406 -3.9284 -0.0405 9 6 6.5834 -4.1143 0.3040 10 7 7.2971 -3.2264 -0.3396 11 7 6.4301 -2.4493 -1.1186 12 6 6.8186 -1.3439 -1.9980 13 6 3.2893 -1.5710 0.6646 14 6 2.0771 -0.7929 1.2092 15 1 1.3201 -1.4822 1.5833 16 7 2.4972 0.1249 2.2709 17 6 2.5241 -0.2936 3.5518 18 8 2.2009 -1.4302 3.8254 19 6 2.9621 0.6486 4.6433 20 16 2.8982 -0.2045 6.2383 21 6 3.4448 1.0909 7.3003 22 1 3.6966 2.0569 6.8883 23 6 3.5508 0.8702 8.6666 24 7 3.2424 -0.3067 9.1690 25 14 4.1295 2.2437 9.7925 26 1 3.1989 3.3961 9.6864 27 1 4.1552 1.7564 11.1950 28 1 5.4940 2.6708 9.3912 29 1 -0.3633 0.4626 0.9178 30 1 -0.3633 0.5636 -0.8593 31 1 -0.3634 -1.0260 -0.0583 32 1 1.4559 -1.6664 -1.4138 33 1 2.1443 -0.1556 -2.0927 34 1 3.1576 -3.1272 -1.5744 35 1 4.1415 -2.0229 -2.5645 36 1 4.4048 -4.5063 0.3256 37 1 6.9652 -4.8617 0.9838 38 1 6.8077 -0.4105 -1.4351 39 1 7.8217 -1.5229 -2.3852 40 1 6.1155 -1.2757 -2.8282 41 1 4.1886 -1.2872 1.2113 42 1 3.1160 -2.6429 0.7605 43 1 2.7560 1.0338 2.0522 44 1 3.9823 0.9803 4.4493 45 1 2.2975 1.5122 4.6663 46 1 3.3168 -0.4612 10.1237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206090017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:12 Heat of formation + Delta-G solvation = 22.650686 kcal Electronic energy + Delta-G solvation = -26860.470137 eV Core-core repulsion = 23105.014092 eV Total energy + Delta-G solvation = -3755.456045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.29152 -41.10747 -39.54985 -35.89293 -34.59559 -34.29893 -33.86625 -31.49736 -31.28077 -29.14593 -27.68923 -27.60161 -27.36060 -25.39671 -22.77307 -22.12310 -21.73853 -21.27876 -20.44413 -19.77414 -17.93959 -17.77315 -17.56283 -17.04360 -16.88732 -16.40540 -16.22418 -15.85022 -15.74001 -15.51675 -15.12264 -14.78107 -14.62224 -14.43366 -14.16295 -13.99533 -13.68824 -13.56477 -13.32735 -13.22434 -13.18010 -13.09870 -13.06107 -12.87597 -12.62953 -12.46614 -12.26667 -11.91561 -11.78137 -11.66471 -11.60307 -11.13785 -10.93756 -10.32157 -10.29399 -10.12043 -9.56141 -9.44681 -8.67540 -8.35364 -6.13609 0.82998 1.25795 1.43090 1.45721 1.55635 1.59369 1.66082 1.81071 2.24863 2.28699 2.98130 2.98561 3.30128 3.37969 3.57657 3.68989 3.71925 3.93653 4.00173 4.15252 4.22165 4.28075 4.33889 4.37763 4.39970 4.48324 4.51826 4.55165 4.65279 4.70202 4.77952 4.78582 4.82765 4.88001 4.88609 5.07715 5.13439 5.20776 5.35230 5.40367 5.53821 5.66794 5.72184 5.89331 6.11667 6.18570 6.49482 6.71544 7.05624 7.23675 8.73671 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011922 B = 0.002699 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.120114 B =10370.806719 C =11817.818435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 H 0.101 0.899 4 C 0.045 3.955 5 N -0.511 5.511 6 C 0.109 3.891 7 C 0.090 3.910 8 C -0.288 4.288 9 C 0.034 3.966 10 N -0.335 5.335 11 N -0.366 5.366 12 C 0.096 3.904 13 C 0.039 3.961 14 C 0.136 3.864 15 H 0.076 0.924 16 N -0.703 5.703 17 C 0.535 3.465 18 O -0.563 6.563 19 C -0.130 4.130 20 S -0.149 6.149 21 C -0.549 4.549 22 H 0.082 0.918 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.261 1.261 27 H -0.278 1.278 28 H -0.263 1.263 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.118 0.882 36 H 0.149 0.851 37 H 0.196 0.804 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.115 0.885 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.415 0.585 44 H 0.104 0.896 45 H 0.110 0.890 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 1.639 -30.358 30.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.119 0.881 4 C -0.083 4.083 5 N -0.235 5.235 6 C -0.019 4.019 7 C -0.040 4.040 8 C -0.318 4.318 9 C -0.151 4.151 10 N -0.158 5.158 11 N -0.149 5.149 12 C -0.044 4.044 13 C -0.090 4.090 14 C 0.031 3.969 15 H 0.094 0.906 16 N -0.357 5.357 17 C 0.321 3.679 18 O -0.441 6.441 19 C -0.281 4.281 20 S 0.079 5.921 21 C -0.697 4.697 22 H 0.100 0.900 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.820 3.180 26 H -0.185 1.185 27 H -0.203 1.203 28 H -0.188 1.188 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.133 0.867 34 H 0.094 0.906 35 H 0.136 0.864 36 H 0.166 0.834 37 H 0.213 0.787 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.133 0.867 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.252 0.748 44 H 0.122 0.878 45 H 0.129 0.871 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.004 0.644 -30.180 30.187 hybrid contribution -0.269 0.829 1.315 1.577 sum -0.272 1.473 -28.865 28.904 Atomic orbital electron populations 1.21764 0.92957 1.02501 1.02673 1.22351 0.96634 1.00136 0.91712 0.88060 1.23444 0.87145 0.99541 0.98123 1.64933 1.25057 1.32319 1.01222 1.20982 0.90482 0.92770 0.97706 1.21212 0.87873 0.95833 0.99049 1.21523 0.97959 1.04953 1.07375 1.24193 0.92980 0.98371 0.99516 1.77303 1.18555 1.08603 1.11317 1.48756 1.03933 1.27222 1.34998 1.22102 1.03626 0.85809 0.92824 1.23087 0.97615 0.98305 0.90001 1.21990 0.95344 0.92056 0.87542 0.90609 1.45815 1.68525 1.16632 1.04689 1.20060 0.76443 0.87426 0.83997 1.90686 1.48890 1.21279 1.83249 1.23372 1.05554 1.02190 0.97009 1.85547 1.88117 1.21239 0.97237 1.23181 1.52102 0.99567 0.94830 0.89998 1.26131 0.94744 0.99230 0.98998 1.70178 1.46536 1.24093 1.13937 0.85008 0.79152 0.77495 0.76380 1.18521 1.20308 1.18766 0.93375 0.89832 0.92483 0.91879 0.86671 0.90591 0.86443 0.83357 0.78690 0.90549 0.89074 0.86682 0.93081 0.93586 0.74781 0.87773 0.87135 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.16 71.98 0.66 -1.00 16 2 C -0.09 -1.15 3.37 -9.59 -0.03 -1.18 16 3 H 0.10 1.13 7.76 -2.39 -0.02 1.11 16 4 C 0.04 0.43 6.00 86.65 0.52 0.95 16 5 N -0.51 -7.59 5.39 -887.55 -4.78 -12.38 16 6 C 0.11 1.41 5.18 85.56 0.44 1.85 16 7 C 0.09 1.81 5.53 41.40 0.23 2.04 16 8 C -0.29 -6.75 9.59 21.99 0.21 -6.54 16 9 C 0.03 0.85 12.03 85.24 1.03 1.88 16 10 N -0.34 -9.22 12.58 -57.02 -0.72 -9.94 16 11 N -0.37 -7.97 4.01 -356.03 -1.43 -9.40 16 12 C 0.10 1.25 11.27 127.77 1.44 2.69 16 13 C 0.04 0.89 5.31 86.45 0.46 1.35 16 14 C 0.14 3.01 2.92 45.87 0.13 3.14 16 15 H 0.08 2.05 7.26 -2.38 -0.02 2.04 16 16 N -0.70 -18.03 5.01 -438.36 -2.20 -20.22 16 17 C 0.53 20.05 7.85 87.66 0.69 20.74 16 18 O -0.56 -26.33 15.51 -3.04 -0.05 -26.37 16 19 C -0.13 -5.27 6.16 71.24 0.44 -4.84 16 20 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 21 C -0.55 -31.85 9.50 67.95 0.65 -31.20 16 22 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 23 C 0.01 0.80 5.49 84.86 0.47 1.26 16 24 N -0.91 -56.65 13.22 21.65 0.29 -56.37 16 25 Si 1.00 44.09 29.55 68.60 2.03 46.12 16 26 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 27 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 28 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 29 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 32 H 0.06 0.53 7.73 -2.38 -0.02 0.51 16 33 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.08 0.85 7.89 -2.39 -0.02 0.83 16 35 H 0.12 0.87 7.23 -2.39 -0.02 0.85 16 36 H 0.15 3.19 7.92 -2.91 -0.02 3.17 16 37 H 0.20 4.00 8.06 -2.91 -0.02 3.98 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.11 0.74 7.14 -2.39 -0.02 0.72 16 41 H 0.05 1.52 7.92 -2.39 -0.02 1.50 16 42 H 0.05 1.15 6.74 -2.39 -0.02 1.13 16 43 H 0.41 8.00 8.38 -92.71 -0.78 7.22 16 44 H 0.10 3.90 8.14 -2.39 -0.02 3.88 16 45 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 46 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -83.44 391.75 -0.49 -83.93 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.21 Total: 23.04 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 7.33 Total: -8.86 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -8.84 Total: -108.31 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.05 Total: -26.37 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -83.44 -0.49 -83.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206090017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.579 kcal (2) G-P(sol) polarization free energy of solvation -83.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds